rna4430, rna4430 (mRNA) Nannochloropsis gaditana

Overview
Namerna4430
Unique Namerna4430
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2127
Alignment locationCM002463.1:576483..577758 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100025g64.7533.mrna
Orig protein idgnl|cribi|Naga_100025g64.7533
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:576483..577758 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100025g64gene4274Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26242.1cds4419Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4430rna4430-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4430 ID=rna4430|Name=rna4430|organism=Nannochloropsis gaditana|type=mRNA|length=2127bp
CCACCTGGGCTCAAGCAGGATCGTCACCAAACCGCAACGATCGCTGTCTT
GCTTTTGCCCTCTTTCGTCACTACTTCTTGCCAGACTCATAATCCTTACG
TCTTTCCAATGTATTTGATTGAAATACCATCAACTTCTGATGGTTGCGGT
ATCTATGGTCTATATGAGAGGGGAGTCGTCTTAAATGCTCTCTCTATTCA
TACCCGTCCCGATGATTGAAGACATCAGAACAGTCGAAACAGCATGAGCT
CTTCATCTGAAAACTCCCTGCCCGCTCAGCATGCGAACGGCCACGTGGGA
CGCGTGGCTTTGGAACGCATGCCGCACGGGGCGCCGGTGCATCGGCGCCT
GGATCATCCCACCCTGACTGCGACGATGCCACCCATCGAGGTGCCTATGT
CCATGTATGCCGAAAATCGGCAGAAGCTCTGTGCACGCTTGCTGGAAAAG
CTGTCAAATGCGCGGGAAAAGAAGCTTTTGGTCTTGATGGAGGGAGGGAA
AGAGGAATACAGGTACGACTCGGATGCGGAGAAGATCTTCAGGCAGGAGT
CCTGGTTCGCATACCTGTTCGGGGTGAAGGAACCGGGTTTTTACGGGTCG
ATCGACGTGAACACGGGATACACAACGCTGTACATGCCTAGACTGCCAGC
GGAGTACGCCGTGTGGATGGGTAGGATCCAGCCGCCTTCGCATTTCCAGG
CCATGTACGAGGTGGACCGTGTCTTGTTCGTGGACGAACTGGCGGCCACC
TTGTTGGGGCCCGAGCGCCCGGACACCCTGCTCCTCAACCGCGGGCTGAA
CACGGACAGCGGCAGCACGGCCAAGCCGGCCTCTGTCGAGGGCGTGACCA
CGCCGCTCAAGGAGGGGAACGGGGCCCAGGCAGGGAAGCCTTTGCCCTGC
GACTACGACTCCCTCTACGACGAGCTGGTGGAGTGCCGGGTCCACAAGTC
CGCCGCAGAGCTCCGTGTCTTGCAGTACGTGAACGACATCAGCAGCGACG
CGCATCTGGCGGTGATGCAGCAGGTGAAGCCGGGCATGACGGAGTACCAG
CTCGAGTCTCTCTTCCTCCACCACGGCTACTACTACGGGGGATGCCGCCA
CGTCGCGTACACCTCCATCTGTGGTTGTGGACCGAACGCGGCCACCCTCC
ACTATGGACACGCGGGTGCCCCGAACGACCGGCTTATTCGGGACGGGGAC
ATGCTCCTCCTCGACATGGGCGCCGAGTTTCGCTGCTACGCCTCGGACAT
CACGTGCTCCTTCCCGGCCTCGGGGACCTTCTCGCCGGACCAGAAGATGA
TATTCCAAGTAGTGCAGGCGATGCAGTTCGCCGTCATGGACGCCCTGCGC
CCCGGGGTGGCCTGGCCGGACATGCATGACCTCGCCTACCGCGTAGGCTG
CGAGATGCTGCTGAAGGGAGGGCTTTTGAAGGGTTCCGTGGAGGCGTTGA
TGGAGGCCAATATCATGCCCTTCTTCATGCCGCACGGGCTGGGGCACTTC
ATGGGCCTGGACGTGCACGACTGCGGAGGCTACCCCCCCGCGCTGGGGCT
GAAGAAGTCCGAGAAACGGGGCTACAAGAACCTGAGGACGGGCCGCGTGA
TGGAGGAGGGGATGGTCATCACGGTGGAGCCGGGGGTGTACTTTATCGAC
AGCCTGCTCGACGAGCTGGTGGCGGACGTGCGGTTGAGGGAGCTGGTGGA
CCTGGAGGTGCTGGAGACGAGGTTTAGGGGCTTTGGGGGCGTGCGCCTGG
AGGACGACGTGGTGATTGTTGAGGGGGGCATTCGGAACCTGACTCGGGCC
GCGCGGACGGTGGAGGAAGTGGAAGCGGTGATGGCGGGGAAGATCAAGTG
CAAAGAGGAGCTGCCCAACAGGTGGTGAGCAGAGGAGAGGGTTAACGGGG
CTTTGTTGGGGACGAGGGAGTGTTTGCTAATAATGAGGGAGACGGGGGAA
ACAGAGCATAAGTTAGAGGCAGGGAGGGAGTAAGAGGTACTGGTAAAGGA
ATGGGCGTAAAAGGGGTCAGGAAATGTGCATTGGCGTCGACGCCGGCACA
TGCTATGTACGAATCAAATTTGAAAATTGCGAGAGCAAAATGGCAGGCCT
TTGGAAATAGACGACAGGGAAAAGCGG
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protein sequence of rna4430

>rna4430-protein ID=rna4430-protein|Name=rna4430|organism=Nannochloropsis gaditana|type=polypeptide|length=332bp
MKVGVREHQKEEDVRATMARPMEMQPFYKPVLPRHNLLPPLAAVLCLLLL
LSRPDATTEAFVLHLRQAKQWRIQGGATTTEDGDGLLSHFRSFFQGEFDN
AVQVASERAQGIEAGLGGGHEQIHCVLEPLELAHGVLGNDSLFCVGATYY
FDGRPDAVFRCRVYSFHPPPPSQGWEDEEDGSSFFLPPLPFAEMRLHRFT
PDFETIMRKNNYDMRLLQEPCNQLAQVVEELTGCSILWSVCTERIVIGQD
IVGNGEGERPEVVHGARFQGEMREGFCLVDSQREANVRLKIEDDLLLTAD
MLSVNDRGTDCRTGELVYGNHQGLPYRMQRRR
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mRNA from alignment at CM002463.1:576483..577758-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4430 ID=rna4430|Name=rna4430|organism=Nannochloropsis gaditana|type=mRNA|length=1276bp|location=Sequence derived from alignment at CM002463.1:576483..577758- (Nannochloropsis gaditana)
AACTATGAGGTGTGGATGATAAAGGTAAATTATGATCGAGGAGGGGATGT
CCCGGGAGTAGCTTCGTATCCGGGCTTTCCCTGAGTATCACCCTAATTCT
ATATGTTGCTCTCGTCAGCAAGAACAGGAATGAAAGTGGGCGTGCGGGAG
CATCAAAAAGAAGAAGATGTGAGAGCTACGATGGCCCGTCCGATGGAAAT
GCAGCCCTTCTATAAACCGGTCCTTCCACGCCACAACCTCCTCCCCCCTT
TGGCTGCAGTCCTCTGTCTCCTTCTTTTGCTGTCACGACCAGATGCCACG
ACAGAAGCTTTCGTACTACATTTAAGACAAGCGAAGCAGTGGAGAATCCA
GGGCGGAGCAACAACTACTGAAGATGGGGATGGACTGCTGTCGCACTTCC
GTTCTTTTTTTCAAGGAGAATTCGACAACGCTGTTCAGGTCGCAAGTGAG
CGGGCACAAGGCATTGAAGCCGGGCTTGGGGGAGGCCATGAACAAATACA
CTGTGTATTGGAGCCTCTCGAACTAGCACACGGAGTGTTAGGAAATGATT
CTTTGTTTTGTGTTGGTGCTACCTATTATTTTGACGGCCGCCCTGATGCT
GTATTTCGATGCCGTGTCTACAGCTTCCACCCCCCCCCTCCATCCCAAGG
GTGGGAAGACGAAGAAGACGGTTCGTCATTCTTCTTACCTCCTTTACCCT
TTGCTGAAATGCGGTTACATCGCTTCACACCAGACTTTGAAACCATCATG
CGCAAAAACAACTATGACATGAGGTTGCTGCAAGAACCCTGTAATCAGCT
GGCACAGGTGGTGGAGGAATTGACAGGTTGCAGCATTCTATGGAGCGTGT
GCACCGAAAGGATAGTAATAGGACAGGACATTGTGGGGAATGGAGAGGGT
GAAAGACCGGAGGTAGTGCACGGTGCGCGTTTTCAAGGCGAGATGCGAGA
GGGGTTCTGCCTGGTGGACTCGCAAAGAGAGGCCAACGTCCGGTTGAAGA
TCGAGGATGACCTGTTGCTCACAGCGGACATGCTGTCGGTGAATGATCGA
GGGACGGACTGTCGGACGGGTGAACTAGTCTACGGGAACCACCAGGGGTT
GCCGTACAGGATGCAGCGCCGGCGCTGAGGGCAAGGCGCTGAGGAAGCGA
AGGACGTGTCGCCCACAAGCTGTTGGATCAGAGTATTAGTCTTTGGCACC
GGCCTCAAAACTCAAGGGCTTCGATAGATCCAAGAAACAATTTACAAAGC
AACAATACGCGGCACGTCCGCCCTCA
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Coding sequence (CDS) from alignment at CM002463.1:576483..577758-

>rna4430 ID=rna4430|Name=rna4430|organism=Nannochloropsis gaditana|type=CDS|length=999bp|location=Sequence derived from alignment at CM002463.1:576483..577758- (Nannochloropsis gaditana)
ATGAAAGTGGGCGTGCGGGAGCATCAAAAAGAAGAAGATGTGAGAGCTAC
GATGGCCCGTCCGATGGAAATGCAGCCCTTCTATAAACCGGTCCTTCCAC
GCCACAACCTCCTCCCCCCTTTGGCTGCAGTCCTCTGTCTCCTTCTTTTG
CTGTCACGACCAGATGCCACGACAGAAGCTTTCGTACTACATTTAAGACA
AGCGAAGCAGTGGAGAATCCAGGGCGGAGCAACAACTACTGAAGATGGGG
ATGGACTGCTGTCGCACTTCCGTTCTTTTTTTCAAGGAGAATTCGACAAC
GCTGTTCAGGTCGCAAGTGAGCGGGCACAAGGCATTGAAGCCGGGCTTGG
GGGAGGCCATGAACAAATACACTGTGTATTGGAGCCTCTCGAACTAGCAC
ACGGAGTGTTAGGAAATGATTCTTTGTTTTGTGTTGGTGCTACCTATTAT
TTTGACGGCCGCCCTGATGCTGTATTTCGATGCCGTGTCTACAGCTTCCA
CCCCCCCCCTCCATCCCAAGGGTGGGAAGACGAAGAAGACGGTTCGTCAT
TCTTCTTACCTCCTTTACCCTTTGCTGAAATGCGGTTACATCGCTTCACA
CCAGACTTTGAAACCATCATGCGCAAAAACAACTATGACATGAGGTTGCT
GCAAGAACCCTGTAATCAGCTGGCACAGGTGGTGGAGGAATTGACAGGTT
GCAGCATTCTATGGAGCGTGTGCACCGAAAGGATAGTAATAGGACAGGAC
ATTGTGGGGAATGGAGAGGGTGAAAGACCGGAGGTAGTGCACGGTGCGCG
TTTTCAAGGCGAGATGCGAGAGGGGTTCTGCCTGGTGGACTCGCAAAGAG
AGGCCAACGTCCGGTTGAAGATCGAGGATGACCTGTTGCTCACAGCGGAC
ATGCTGTCGGTGAATGATCGAGGGACGGACTGTCGGACGGGTGAACTAGT
CTACGGGAACCACCAGGGGTTGCCGTACAGGATGCAGCGCCGGCGCTGA
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Synonyms
Publications