EWM26242.1, cds4419 (CDS) Nannochloropsis gaditana

Overview
NameEWM26242.1
Unique Namecds4419
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:576631..577629 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26242.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100025g64.7533.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:576631..577629 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
GO:0017009protein-phycocyanobilin linkage
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR010404CpcT/CpeT
Homology
BLAST of EWM26242.1 vs. NCBI_GenBank
Match: gi|585108241|gb|EWM26242.1| (hypothetical protein Naga_100025g64 [Nannochloropsis gaditana])

HSP 1 Score: 687.182 bits (1772), Expect = 0.000e+0
Identity = 332/332 (100.00%), Postives = 332/332 (100.00%), Query Frame = 0
Query:    1 MKVGVREHQKEEDVRATMARPMEMQPFYKPVLPRHNLLPPLAAVLCLLLLLSRPDATTEAFVLHLRQAKQWRIQGGATTTEDGDGLLSHFRSFFQGEFDNAVQVASERAQGIEAGLGGGHEQIHCVLEPLELAHGVLGNDSLFCVGATYYFDGRPDAVFRCRVYSFHPPPPSQGWEDEEDGSSFFLPPLPFAEMRLHRFTPDFETIMRKNNYDMRLLQEPCNQLAQVVEELTGCSILWSVCTERIVIGQDIVGNGEGERPEVVHGARFQGEMREGFCLVDSQREANVRLKIEDDLLLTADMLSVNDRGTDCRTGELVYGNHQGLPYRMQRRR 332
            MKVGVREHQKEEDVRATMARPMEMQPFYKPVLPRHNLLPPLAAVLCLLLLLSRPDATTEAFVLHLRQAKQWRIQGGATTTEDGDGLLSHFRSFFQGEFDNAVQVASERAQGIEAGLGGGHEQIHCVLEPLELAHGVLGNDSLFCVGATYYFDGRPDAVFRCRVYSFHPPPPSQGWEDEEDGSSFFLPPLPFAEMRLHRFTPDFETIMRKNNYDMRLLQEPCNQLAQVVEELTGCSILWSVCTERIVIGQDIVGNGEGERPEVVHGARFQGEMREGFCLVDSQREANVRLKIEDDLLLTADMLSVNDRGTDCRTGELVYGNHQGLPYRMQRRR
Sbjct:    1 MKVGVREHQKEEDVRATMARPMEMQPFYKPVLPRHNLLPPLAAVLCLLLLLSRPDATTEAFVLHLRQAKQWRIQGGATTTEDGDGLLSHFRSFFQGEFDNAVQVASERAQGIEAGLGGGHEQIHCVLEPLELAHGVLGNDSLFCVGATYYFDGRPDAVFRCRVYSFHPPPPSQGWEDEEDGSSFFLPPLPFAEMRLHRFTPDFETIMRKNNYDMRLLQEPCNQLAQVVEELTGCSILWSVCTERIVIGQDIVGNGEGERPEVVHGARFQGEMREGFCLVDSQREANVRLKIEDDLLLTADMLSVNDRGTDCRTGELVYGNHQGLPYRMQRRR 332          
BLAST of EWM26242.1 vs. NCBI_GenBank
Match: gi|922862353|gb|KOO29974.1| (hypothetical protein Ctob_013023 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 114.39 bits (285), Expect = 1.890e-26
Identity = 82/251 (32.67%), Postives = 112/251 (44.62%), Query Frame = 0
Query:   83 GDGLLSHFRSFFQGEFDNAVQVASERAQGIEAGLGGGHEQIHCVLEPLELAHGVLGNDSLFCVGATYYFDGRPDAVFRCRVYSFHPPPPSQGWEDEEDGSSFFLPPLPFAEMRLHRFTPDFETIMRKNNYDMRLLQEPCNQLAQVVEELTGCSILWSVCTERIVIGQDIVGNGEGERPEVVH---GARFQGEMREGFCLVDSQREANVRLKIEDDLLLTADMLSVNDRGTDCRTGELVYGNHQGLPYRMQR 330
               +LS F S F+G FDN  QV +E+  G+    GGGHE IHC L+P+ L     G      V A+YYF+G PDAVFR R+Y+    P                              P F T +R   Y MRL     +   ++   +T   + WS         +D+  +      +V     G RF+G MR     + S+R     +++ DD+ L  D L VNDR TD  TG  VYGN   +PY+M R
Sbjct:   25 ASSVLSRFLSQFRGHFDNHEQVETEKLAGLTPREGGGHEHIHCSLQPVTLHDRPQGQ----YVLASYYFNGDPDAVFRERLYAIDELPRD----------------------------PQFGTCVRMRIYKMRL-----STAERLRAGMTLNDVAWSA-------AEDLHASLHVPEADVFWRWCGERFEGSMRTQSIEIISERSGRA-IRVRDDVALWQDALWVNDRATDAETGAYVYGNIHDIPYKMAR 230          
BLAST of EWM26242.1 vs. NCBI_GenBank
Match: gi|1072235016|gb|OEU19745.1| (hypothetical protein FRACYDRAFT_235801 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 102.449 bits (254), Expect = 8.181e-21
Identity = 75/277 (27.08%), Postives = 120/277 (43.32%), Query Frame = 0
Query:   82 DGDGLLSH------FRSFFQGEFDNAVQVASERAQGIEAGLGGGHEQIHCVLEPLELAHGVLGNDSLFCVGATYYFDGRPDAVFRCRVYSFHPPPPSQGWEDEEDGSSFFLPPLPFAEMRLHRFTPDFETIMRKNNYD-------MRLLQEP---------------CNQLAQVVEELTGCSILWSVCTERIVIGQDIVGNGEGERPEVVHGARFQGEMREGFCLVDSQREANVRLKIEDDLLLTADMLSVNDRGTDCRTGELVYGNHQGLPYRMQR 330
            DGDG  SH         +FQG+FDN  QV  +R  G+    GGGHE  HC L P+  +  +          A ++FDG P+ +FR R Y    P      + +   +          EMRL+   P+ E +++ ++ D        +  Q                  ++  Q V  L+ C I+WS   ++  I    + + +G+  E          M  G  +V+S     ++++I D L L   +  +NDRG D  TG  +YGN + +PYR++R
Sbjct:   82 DGDGESSHEKVTKILSEWFQGDFDNYAQVVEDRKNGLLPREGGGHEHFHCTLVPVTESTRL----------AAFFFDGNPNRIFRFRYYELLTPTIINDVDHQHSNNV-------TVEMRLNTLHPELEQLLKSHSTDPLSWPDIFKNFQHEGVSSNSSSGSSSSSGSDEKNQKVIPLSKCEIVWSF--DKDPIQHSYISSDDGKDDE-AENMSLHAVMVHGEQVVNSTIVPGMQIRILDQLSLYQHVFYINDRGFDPITGAFIYGNQRDIPYRLER 338          
BLAST of EWM26242.1 vs. NCBI_GenBank
Match: gi|219125852|ref|XP_002183185.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217405460|gb|EEC45403.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 97.0561 bits (240), Expect = 2.111e-19
Identity = 75/239 (31.38%), Postives = 105/239 (43.93%), Query Frame = 0
Query:   94 FQGEFDNAVQVASERAQGIEAGLGGGHEQIHCVLEPLELAHGVLGNDSLFCVGATYYFDGRPDAVFRCRVYSFHPPPPSQGWEDEEDGSSFFLPPLPFAEMRLHRFTPDFETIMRK--NNYDMRLLQEPCNQLAQVVEELTGCSILWSVCTERIVIGQDIVGNGEGERPEVVHGARFQGEMREGFCLVDSQREANVRLKIEDDLLLTADMLSVNDRGTDCRTGELVYGNHQGLPYRMQR 330
            FQG+FDN  QV  +R +G+    GGGHE IHC L P+     +          A +YFDG P A+FR R Y   P   S                    +  LH   P+ E  +R+  +     L  E      +V + L  C + WS   + +   Q      EG  P  +H     GE      LV+SQ     ++ I+D L L  D L ++DRG D  T   +YGN +G+PYR++R
Sbjct:   70 FQGDFDNYNQVIHDRKKGLLPREGGGHEHIHCSLVPVSETARL----------AAFYFDGVPGAIFRFRFYDLIPVDEST------------------IDTVLHTLHPELERRLRRCPDPSSWPLFFEEFGVKGRV-QLLPKCDVRWSWVLDPV---QHDYALDEG--PNGLHAVMVHGE-----ALVESQMMPGQKILIKDQLSLWPDELWIHDRGFDPDTMRFIYGNQRGVPYRLER 269          
BLAST of EWM26242.1 vs. NCBI_GenBank
Match: gi|397643497|gb|EJK75900.1| (hypothetical protein THAOC_02359 [Thalassiosira oceanica])

HSP 1 Score: 92.0485 bits (227), Expect = 2.962e-17
Identity = 92/347 (26.51%), Postives = 132/347 (38.04%), Query Frame = 0
Query:   31 VLPRHNLLPPLAAVLCL--LLLLSRPDATTEAFVLHLRQAKQWRIQGGATTTEDGDGLLSHFRSFFQGEFDNAVQVASERAQGIEAGLGGGHEQIHCVLEPL-ELAHGVLGNDSLF-CVGATYYFDGRPDAVFRCRVYSFHPPPPSQGWEDEEDGSSFFLPPLPFAEMRLHRFTPDFETIMRKNNYDMRLLQEPCNQ--------------------------LAQVVEELTGCSILWSV---CTERIVIGQDIVGNGEGERPEVVHGARFQGEMREGF--CLVDS-QREANVRLKIEDDLLLTADMLSVNDRGTDCRTGE-----------LVYGNHQGLPYRMQR 330
            V+PR     P  AV C   LL  SR    + +     R      I       +          S FQG+FDN  QV  +R  G+  G GGGHE IHC L P  +      G+      + A +YF+G P  +FR R Y    P      +  +DGS+          M+L+  +P  E  +RK +      +EPC+                           +  +V  L GC +LW       +   +  +   + E           F   M  G    +VDS       R+ I+D+L L  D   +NDRG D   GE            VYGN +G+PY+++R
Sbjct:   24 VVPR-----PALAVGCSDGLLAFSRASPHSNSKTARQRSTIVRTIAREVDCDKSSGEYFRRLTSTFQGDFDNYNQVVLDRQHGLTPGAGGGHEHIHCTLVPCPDFGDDAEGDTRRSRWILAAFYFNGNPQQIFRFRAYQLWAPDH----DGMDDGSA-------VVRMKLNTLSPILEQALRKRS------EEPCSWWRTAWKVWSGEDKKKFHEDIIPWSQFIPSLVSPLQGCDVLWEEDWDAAKHSYLLDNAYNSDESNDITSFCDTSFHATMEAGSSGAIVDSISMIPGQRILIKDELSLWEDKFWINDRGYD-PDGETDSMNENQDMPFVYGNRRGVPYKLER 347          
BLAST of EWM26242.1 vs. NCBI_GenBank
Match: gi|1189391371|gb|OSX78305.1| (hypothetical protein BU14_0112s0004, partial [Porphyra umbilicalis])

HSP 1 Score: 86.6557 bits (213), Expect = 5.671e-17
Identity = 56/152 (36.84%), Postives = 71/152 (46.71%), Query Frame = 0
Query:   87 LSHFRSFFQGEFDNAVQVASERAQGIEAGLGGGHEQIHCVLEPLELAHGVLGNDSLFCVGATYYFDGRPDAVFRCRVYSFHPPPPSQGWEDEEDGSSFFLPPLPFAEMRLHRFTPDFETIMRKNNYDMRLLQEPCNQLAQVVEELTGCSILW 238
            L  F ++F G+FDN  QV  ERA G+    GGGHE IHC L         LG+  LF   A YYF+G P  VFR R+Y   P   S               P+   EMR++R   + E  +R   YD+R L       A V + L GC + W
Sbjct:   11 LGEFLAWFAGDFDNHEQVVEERAAGLSPREGGGHEHIHCTLTS-------LGDGWLF---AKYYFNGDPSVVFRSRLYRVLPVVES---------------PVGLLEMRIYRLFAEAEASLRATGYDVRGLS---FTDADVYDWLQGCEVYW 134          
BLAST of EWM26242.1 vs. NCBI_GenBank
Match: gi|551543674|ref|XP_005759987.1| (hypothetical protein EMIHUDRAFT_438591 [Emiliania huxleyi CCMP1516] >gi|485608189|gb|EOD07558.1| hypothetical protein EMIHUDRAFT_438591 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 77.7962 bits (190), Expect = 8.773e-13
Identity = 76/246 (30.89%), Postives = 98/246 (39.84%), Query Frame = 0
Query:   90 FRSFFQGEFDNAVQVASERAQGIEAGLGGGHEQIHCVLEPLELAHGVLGNDSLFCVGATYYFDGRPDAVFRCRVYSFHPPPPSQGWEDEEDGSSFFLPPLPFAEMRLHRFTPDFETIMRKNNYDMRLLQEPCNQLAQVVEELT--GCSILWSVCTERIVIGQDIVGNGEGERPEVVHGARFQGEMREGFCLVDSQREANVRLKIEDDLLLTADMLSVNDRGTDCRT-GELVYGNHQGLPYRMQRRR 332
            F S F G FDN  Q   +R  G     GGGHE IHC L+PL L            V A YYF+G P   FR R+Y+  P    +   D E              M++ R     E  +R  + D   +     +   + EEL   GC + W     R+                   G  F+GEM     LV S       + + D L L    L VNDRG  C T G  +YGN + +PY+M R R
Sbjct:   68 FLSQFCGHFDNLEQALEDRRAGRPPREGGGHEHIHCHLQPLALERPA--------VLANYYFNGDPARPFRQRLYTLQPTEARRSAADGE------------IRMQIFRLAEQVEAKLRAASGDAAAVAWDAER--DLAEELLIPGCDVFW----RRV-------------------GGHFEGEMATASALVHSPLLGR-EIVVTDHLHLWEGALWVNDRG--CGTDGTYLYGNTRDVPYKMDRVR 265          
BLAST of EWM26242.1 vs. NCBI_GenBank
Match: gi|551582968|ref|XP_005776921.1| (hypothetical protein EMIHUDRAFT_443830 [Emiliania huxleyi CCMP1516] >gi|485629111|gb|EOD24492.1| hypothetical protein EMIHUDRAFT_443830 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 77.7962 bits (190), Expect = 1.025e-12
Identity = 76/246 (30.89%), Postives = 98/246 (39.84%), Query Frame = 0
Query:   90 FRSFFQGEFDNAVQVASERAQGIEAGLGGGHEQIHCVLEPLELAHGVLGNDSLFCVGATYYFDGRPDAVFRCRVYSFHPPPPSQGWEDEEDGSSFFLPPLPFAEMRLHRFTPDFETIMRKNNYDMRLLQEPCNQLAQVVEELT--GCSILWSVCTERIVIGQDIVGNGEGERPEVVHGARFQGEMREGFCLVDSQREANVRLKIEDDLLLTADMLSVNDRGTDCRT-GELVYGNHQGLPYRMQRRR 332
            F S F G FDN  Q   +R  G     GGGHE IHC L+PL L            V A YYF+G P   FR R+Y+  P    +   D E              M++ R     E  +R  + D   +     +   + EEL   GC + W     R+                   G  F+GEM     LV S       + + D L L    L VNDRG  C T G  +YGN + +PY+M R R
Sbjct:   68 FLSQFCGHFDNLEQALEDRRAGRPPREGGGHEHIHCHLQPLALERPA--------VLANYYFNGDPARPFRQRLYTLQPTEARRSAADGE------------IRMQIFRLAEQVEAKLRAASGDAAAVAWDAER--DLAEELLIPGCDVFW----RRV-------------------GGHFEGEMATASALVHSPLLGR-EIVVTDHLHLWEGALWVNDRG--CGTDGTYLYGNTRDVPYKMDRVR 265          
BLAST of EWM26242.1 vs. NCBI_GenBank
Match: gi|298712633|emb|CBJ48658.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 70.0922 bits (170), Expect = 1.011e-10
Identity = 47/131 (35.88%), Postives = 59/131 (45.04%), Query Frame = 0
Query:   75 GGATTTEDGDGLLSHFRSFFQGEFDNAVQVASERAQGIEAGLGGGHEQIHCV---LEPLELAHGVL-------GNDS-------------------------LFCVGATYYFDGRPDAVFRCRVYSFHPPP 170
            GG +  E  D ++S     FQGEFDN  QV ++R  G+  G GGGHE IHC    L+P E+   V        G+ S                         L  V A YYF+G  + VFR R+YSFH  P
Sbjct:   47 GGLSGDEPRDAMVSELLQLFQGEFDNYDQVVADRKAGMTPGPGGGHEHIHCSLKRLDPAEVPEQVAAAAAAPPGSRSSSGEEEEEEEEGAGQGAQQQQPEQPLAVVAAKYYFNGDSNVVFRYRLYSFHACP 177          
The following BLAST results are available for this feature:
BLAST of EWM26242.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 9
Match NameE-valueIdentityDescription
gi|585108241|gb|EWM26242.1|0.000e+0100.00hypothetical protein Naga_100025g64 [Nannochlorops... [more]
gi|922862353|gb|KOO29974.1|1.890e-2632.67hypothetical protein Ctob_013023 [Chrysochromulina... [more]
gi|1072235016|gb|OEU19745.1|8.181e-2127.08hypothetical protein FRACYDRAFT_235801 [Fragilario... [more]
gi|219125852|ref|XP_002183185.1|2.111e-1931.38predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|397643497|gb|EJK75900.1|2.962e-1726.51hypothetical protein THAOC_02359 [Thalassiosira oc... [more]
gi|1189391371|gb|OSX78305.1|5.671e-1736.84hypothetical protein BU14_0112s0004, partial [Porp... [more]
gi|551543674|ref|XP_005759987.1|8.773e-1330.89hypothetical protein EMIHUDRAFT_438591 [Emiliania ... [more]
gi|551582968|ref|XP_005776921.1|1.025e-1230.89hypothetical protein EMIHUDRAFT_443830 [Emiliania ... [more]
gi|298712633|emb|CBJ48658.1|1.011e-1035.88conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4430rna4430Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications