rna4427, rna4427 (mRNA) Nannochloropsis gaditana

Overview
Namerna4427
Unique Namerna4427
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length510
Alignment locationCM002463.1:571483..572190 +

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Properties
Property NameValue
Productholliday junction resolvase
Orig transcript idgnl|cribi|Naga_100025g67.7540.mrna
Orig protein idgnl|cribi|Naga_100025g67.7540
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:571483..572190 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100025g67gene4271Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4427rna4427-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26249.1cds4416Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4427 ID=rna4427|Name=rna4427|organism=Nannochloropsis gaditana|type=mRNA|length=510bp
ATGGCGAGTCGAGGCACCCCATTCCGACTTGAGGTAGATAATTGCTCTTG
TGTCGCCTTTTCCCATAGAGCCTCAAGAAAAAGCATCCACGCCTGTCTCC
ACTTCACAATAAGCAGGCCTGACACCATGTCTTCCCTGATGGCCACAGTT
CGAGACTGGCAAGATCGCCACCGACGCTTTGTAAAGAGGGTGCACGCCTT
TCGCATCCCCCTGTCCCCTCCTGCCAAGGCCGTCGCCCAGGTCGTATATT
TTTCCATCCCTCTCGTGGCGGGGTACTTCATAATGGGATGGGCCACTGAC
CGTGCCAAGGCTGAGATTCAATACAGCGACAGCAACGAGGCTGAAGAGAC
AAGGATACGCAGGGATGCCAGTCAAGGAGAAGAAGCCACTCGGGTGTTTA
AAGCGATGCGCGTGGATCGAGGGGGAGGCGCGATAGACGAGCAGATTGCC
CGTCAAAATCTGGGGCTGCAGAGTTACCTTGACTCTATTCGAGAGTCGGG
GAAAAAGTGA
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protein sequence of rna4427

>rna4427-protein ID=rna4427-protein|Name=rna4427|organism=Nannochloropsis gaditana|type=polypeptide|length=235bp
MGLLLTLQPSDDHSVPTTMPYLSSPHSTRLVKFLRPEALAAYLRHVRSTS
AGASAVLLGLDVGDSKVGVSIADRTLTLAQPLARIDRPARRSLLFGQAPG
GADRGRRQPETFPALCGRLLSGLIKEHRAAGLVVGYPLTLWEGKPSLRCR
EVLAFMGAVYKESWEELSVPFAVWDERMTTQMAREALRGEEVEDGGGFRR
GKRKGERRRQALEDQVAATIILQSYLERHIRPDIA
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mRNA from alignment at CM002463.1:571483..572190+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4427 ID=rna4427|Name=rna4427|organism=Nannochloropsis gaditana|type=mRNA|length=708bp|location=Sequence derived from alignment at CM002463.1:571483..572190+ (Nannochloropsis gaditana)
ATGGGGCTCCTCCTGACCCTACAACCATCAGACGACCACAGTGTCCCCAC
CACCATGCCctacctttcctccccccattccACGCGTCTGGTCAAGTTCC
TGCGGCCCGAGGCTCTGGCCGCCTATCTCCGGCACGTCCGAAGCACTTCC
GCAGGGGCTTCCGCCGTGCTCCTGGGCTTGGACGTGGGTGACAGTAAAGT
CGGCGTGTCTATCGCCGATAGGACCTTGACGCTTGCCCAGCCCCTGGCTC
GCATCGACCGCCCTGCccgccgctctctcctttttgGACAGGCCCCAGGG
GGCGCCGACAGAGGACGCCGGCAGCCCGAGACGTTCCCGGCTCTGTGTGG
GCGGCTCCTGTCCGGGCTGATCAAGGAGCATAGGGCGGCCGGCCTGGTGG
TGGGCTATCCCCTGACCTTGTGGGAAGGCAAGCCGAGCCTGCGGTGtcgg
gaggtgctggcgtTCATGGGCGCCGTGTACAAAGAGTCGTGGGAGGAGCT
CAGCGTGCCTTTCGCAGTGTGGGACGAGAGGATGACGACCCAGATGGCTC
GAGAAGCCctgaggggagaagaggtggaggacggcggaggattcaggagg
gggaagagaaagggggagaggaggcggcaggccCTGGAAGACCAGGTTGC
GGCGACGATTATCTTGCAGTCATACCTAGAAAGACACATAAGGCCCGACA
TTGCCTGA
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Coding sequence (CDS) from alignment at CM002463.1:571483..572190+

>rna4427 ID=rna4427|Name=rna4427|organism=Nannochloropsis gaditana|type=CDS|length=708bp|location=Sequence derived from alignment at CM002463.1:571483..572190+ (Nannochloropsis gaditana)
ATGGGGCTCCTCCTGACCCTACAACCATCAGACGACCACAGTGTCCCCAC
CACCATGCCctacctttcctccccccattccACGCGTCTGGTCAAGTTCC
TGCGGCCCGAGGCTCTGGCCGCCTATCTCCGGCACGTCCGAAGCACTTCC
GCAGGGGCTTCCGCCGTGCTCCTGGGCTTGGACGTGGGTGACAGTAAAGT
CGGCGTGTCTATCGCCGATAGGACCTTGACGCTTGCCCAGCCCCTGGCTC
GCATCGACCGCCCTGCccgccgctctctcctttttgGACAGGCCCCAGGG
GGCGCCGACAGAGGACGCCGGCAGCCCGAGACGTTCCCGGCTCTGTGTGG
GCGGCTCCTGTCCGGGCTGATCAAGGAGCATAGGGCGGCCGGCCTGGTGG
TGGGCTATCCCCTGACCTTGTGGGAAGGCAAGCCGAGCCTGCGGTGtcgg
gaggtgctggcgtTCATGGGCGCCGTGTACAAAGAGTCGTGGGAGGAGCT
CAGCGTGCCTTTCGCAGTGTGGGACGAGAGGATGACGACCCAGATGGCTC
GAGAAGCCctgaggggagaagaggtggaggacggcggaggattcaggagg
gggaagagaaagggggagaggaggcggcaggccCTGGAAGACCAGGTTGC
GGCGACGATTATCTTGCAGTCATACCTAGAAAGACACATAAGGCCCGACA
TTGCCTGA
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Synonyms
Publications