EWM26249.1, cds4416 (CDS) Nannochloropsis gaditana

Overview
NameEWM26249.1
Unique Namecds4416
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:571483..572190 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26249.1
Productholliday junction resolvase
Orig transcript idgnl|cribi|Naga_100025g67.7540.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:571483..572190 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006259DNA metabolic process
GO:0009058biosynthetic process
GO:0016043cellular component organization
GO:0031564transcription antitermination
GO:0006310DNA recombination
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR005227YqgF
IPR006641YqgF/RNaseH-like_dom
Homology
BLAST of EWM26249.1 vs. NCBI_GenBank
Match: gi|585108248|gb|EWM26249.1| (holliday junction resolvase [Nannochloropsis gaditana])

HSP 1 Score: 471.085 bits (1211), Expect = 6.141e-168
Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 0
Query:    1 MGLLLTLQPSDDHSVPTTMPYLSSPHSTRLVKFLRPEALAAYLRHVRSTSAGASAVLLGLDVGDSKVGVSIADRTLTLAQPLARIDRPARRSLLFGQAPGGADRGRRQPETFPALCGRLLSGLIKEHRAAGLVVGYPLTLWEGKPSLRCREVLAFMGAVYKESWEELSVPFAVWDERMTTQMAREALRGEEVEDGGGFRRGKRKGERRRQALEDQVAATIILQSYLERHIRPDIA 235
            MGLLLTLQPSDDHSVPTTMPYLSSPHSTRLVKFLRPEALAAYLRHVRSTSAGASAVLLGLDVGDSKVGVSIADRTLTLAQPLARIDRPARRSLLFGQAPGGADRGRRQPETFPALCGRLLSGLIKEHRAAGLVVGYPLTLWEGKPSLRCREVLAFMGAVYKESWEELSVPFAVWDERMTTQMAREALRGEEVEDGGGFRRGKRKGERRRQALEDQVAATIILQSYLERHIRPDIA
Sbjct:    1 MGLLLTLQPSDDHSVPTTMPYLSSPHSTRLVKFLRPEALAAYLRHVRSTSAGASAVLLGLDVGDSKVGVSIADRTLTLAQPLARIDRPARRSLLFGQAPGGADRGRRQPETFPALCGRLLSGLIKEHRAAGLVVGYPLTLWEGKPSLRCREVLAFMGAVYKESWEELSVPFAVWDERMTTQMAREALRGEEVEDGGGFRRGKRKGERRRQALEDQVAATIILQSYLERHIRPDIA 235          
BLAST of EWM26249.1 vs. NCBI_GenBank
Match: gi|931385002|gb|KPJ74980.1| (hypothetical protein AMS14_04495 [Planctomycetes bacterium DG_20])

HSP 1 Score: 80.4925 bits (197), Expect = 1.436e-15
Identity = 61/171 (35.67%), Postives = 85/171 (49.71%), Query Frame = 0
Query:   57 LLGLDVGDSKVGVSIADRTLTLAQPLARIDRPARRSLLFGQAPGGADRGRRQPETFPALCGRLLSGLIKEHRAAGLVVGYPLTLWEGKPSLRCREVLAFMGAVYKESWEELSVPFAVWDERMTTQMAREALRGEEVEDGGGFRRGKRKGERRRQALEDQVAATIILQSYLE 227
            +LGLD+G  +VGV+++D   T+A PL + +   RR L+                         + GL+ E  AA +VVG P+ L +G+   + R   A + A+     E L VP A WDER TT+ A EA+R        G   GKRK  R      D+VAA +ILQSYL+
Sbjct:    3 ILGLDLGRRRVGVAVSDPNGTIAHPLLQFEPKGRRDLVA-----------------------TVKGLVAEQEAARVVVGMPV-LVDGRKGEQARWTQATVSALA----EALEVPVATWDERFTTRDAEEAMR------DAGLHPGKRKARR------DKVAAALILQSYLD 133          
BLAST of EWM26249.1 vs. NCBI_GenBank
Match: gi|493609986|ref|WP_006562377.1| (Holliday junction resolvase RuvX [Oscillochloris trichoides] >gi|308226652|gb|EFO80357.1| Holliday junction resolvase YqgF [Oscillochloris trichoides DG-6])

HSP 1 Score: 76.2554 bits (186), Expect = 7.318e-14
Identity = 59/175 (33.71%), Postives = 89/175 (50.86%), Query Frame = 0
Query:   57 LLGLDVGDSKVGVSIADRTLTLAQPLARIDRPARRSLLFGQAPGGADRGRRQPETFPALCGRLLSGLIKEHRAAGLVVGYPLTLWEGKPSLRCREVLAFMGAVYKESWEELSVPFAVWDERMTTQMAREALRGEEVEDGGGFRRGKRKGERRRQALEDQVAATIILQSYLERHIR 231
            LLGLDVGD ++GV+++D    LA PL  I+   R   +                        +++ L++EH   G+VVG PLTL  G+   +  +  +F     +E   ++ +P  ++DER TT +A + LR   V           K E+R+Q + DQVAA+IILQ YL+ HIR
Sbjct:    6 LLGLDVGDRRIGVALSDALGMLASPLTTINANPRSQAI-----------------------TMIARLVREHEVQGIVVGLPLTL-RGEIGPQAEQTRSFA----QELERQVGLPVMLFDERYTTTVAEQLLREMGV-----------KPEKRKQQI-DQVAASIILQDYLD-HIR 139          
BLAST of EWM26249.1 vs. NCBI_GenBank
Match: gi|1084596542|gb|OGO50819.1| (hypothetical protein A2148_03885 [Chloroflexi bacterium RBG_16_68_14])

HSP 1 Score: 73.9442 bits (180), Expect = 4.951e-13
Identity = 63/177 (35.59%), Postives = 88/177 (49.72%), Query Frame = 0
Query:   57 LLGLDVGDSKVGVSIADRTLTLAQPLARIDRPARRSLLFGQAPGGADRGRRQPETFPALCGRLLSGLIKEHRAAGLVVGYPLTLWEGKPSLRCREVLAFMGAVYKESWEELSVPFAVWDERMTTQMAREALRGEEVEDGGGFRRGKRKGERRRQALEDQVAATIILQSYLERHIRPD 233
            +LGLDVG++++G++I+     LA PL          +L  Q                A   R +S L +      LVVG+PL+L +G    + R V AF   + +ES     +P  +WDER+T+  A  A  G         RR + KG RRR+   D VAA IILQSYL+RH RP+
Sbjct:    4 ILGLDVGEARIGIAISAPEGRLAVPL---------RILECQGD--------------AADARAISDLARAEGVEALVVGHPLSL-DGSVGPQARRVEAFARRLAQES----GLPLELWDERLTSVQAERAPMGS--------RRREAKGARRRRQPADDVAAAIILQSYLDRH-RPE 143          
BLAST of EWM26249.1 vs. NCBI_GenBank
Match: gi|1124504508|ref|WP_074788999.1| (Holliday junction resolvase RuvX [Pseudobutyrivibrio ruminis] >gi|1094269917|emb|SEK31399.1| putative holliday junction resolvase [Pseudobutyrivibrio ruminis])

HSP 1 Score: 72.0182 bits (175), Expect = 2.225e-12
Identity = 55/174 (31.61%), Postives = 81/174 (46.55%), Query Frame = 0
Query:   57 LLGLDVGDSKVGVSIADRTLTLAQPLARIDRPARRSLLFGQAPGGADRGRRQPETFPALCGRLLSGLIKEHRAAGLVVGYPLTLWEGKPSLRCREVLAFMGAVYKESWEE-LSVPFAVWDERMTTQMAREALRGEEVEDGGGFRRGKRKGERRRQALEDQVAATIILQSYLERH 229
            +LGLD G   VGV+I+D  L  AQ L  I R               DR  +   T        +  L  E++ + +V+GYPL + +     RC + + F     KE  E+ + +P  + DER+TT  A E L     E+ G  ++ ++K         DQ+AA IILQ YL+ H
Sbjct:    5 ILGLDYGTKTVGVAISDPLLLTAQELETITR---------------DRASKLRHTLVH-----IKELCDEYQVSTIVLGYPLNM-DDSEGFRCEDTIKF-----KELLEKRVDIPIVLIDERLTTMYADEIL-----EESGVDKKDRKK-------FIDQIAAAIILQDYLDNH 140          
BLAST of EWM26249.1 vs. NCBI_GenBank
Match: gi|931398605|gb|KPJ87470.1| (hypothetical protein AMS18_14585 [Gemmatimonas sp. SG8_17])

HSP 1 Score: 71.633 bits (174), Expect = 2.871e-12
Identity = 57/173 (32.95%), Postives = 83/173 (47.98%), Query Frame = 0
Query:   57 LLGLDVGDSKVGVSIADRTLTLAQPLARIDRPARRSLLFGQAPGGADRGRRQPETFPALCGRLLSGLIKEHRAAGLVVGYPLTL--WEGKPSLRCREVLAFMGAVYKESWEELSVPFAVWDERMTTQMAREALRGEEVEDGGGFRRGKRKGERRRQALEDQVAATIILQSYLE 227
            +L +DVGD ++G++++D T TLAQPLA + R   +    G+                      L   I  HR   L++G PLT    E + +L  R+V A +        E+  +P A WDERM+T     A+R    E GG      RKG+       DQ+AAT+ LQ+YL+
Sbjct:    7 VLAIDVGDKRIGLALSDPTQTLAQPLATLTRRVGKRFPMGK----------------------LKQFIDTHRPVALLLGLPLTPEGSEEERALAVRQVGALL-------LEKAELPIAYWDERMSTARVHSAVR----ESGGTL---GRKGD------VDQLAATVFLQTYLD 137          
BLAST of EWM26249.1 vs. NCBI_GenBank
Match: gi|524728676|emb|CDE34334.1| (putative Holliday junction resolvase [Ruminococcus sp. CAG:403])

HSP 1 Score: 70.8626 bits (172), Expect = 6.153e-12
Identity = 53/174 (30.46%), Postives = 82/174 (47.13%), Query Frame = 0
Query:   56 VLLGLDVGDSKVGVSIADRTLTLAQPLARIDRPARRSLLFGQAPGGADRGRRQPETFPALCGRLLSGLIKEHRAAGLVVGYPLTL--WEGKPSLRCREVLAFMGAVYKESWEELS-VPFAVWDERMTTQMAREALRGEEVEDGGGFRRGKRKGERRRQALEDQVAATIILQSYL 226
            +++G+D GD++ G++I D+   LA P+  I                        ET    C   ++ L  E++   LVVGYP  +    G+ + +C+        ++  S  EL+ +PF +WDER TT  A + L            RGK     +R+A+ D VAATIIL+SYL
Sbjct:    2 IIMGIDFGDARTGIAICDKNELLASPICVIH-----------------------ETDWQACMDQIAKLTAEYKVEQLVVGYPKNMNGTVGERAEKCQ--------LFASSLSELTNLPFVMWDERCTTVSAHQYLNVTNT-------RGK-----KRKAVVDAVAATIILESYL 132          
BLAST of EWM26249.1 vs. NCBI_GenBank
Match: gi|1032153476|gb|OAO16804.1| (RNAse H-fold protein [Blastocystis sp. ATCC 50177/Nand II])

HSP 1 Score: 70.8626 bits (172), Expect = 1.104e-11
Identity = 57/202 (28.22%), Postives = 98/202 (48.51%), Query Frame = 0
Query:   33 FLRPEALAAYLRHVRSTSAGASAVLLGLDVGDSKVGVSIADRTLTLAQPLARIDRPARRSLLFGQAPGGADRGRRQPETFPALCGRLLSGLIKEHRAAGLVVGYPLTLWEGKPSLRCREVLAFMGAVYKESWEELSVPFAVWDERMTTQMAREALRGEEVEDGGGFRRGKRKGERRRQALEDQVAATIILQSYLERHIRPDI 234
            FL P+ L    R +    A     LLG+DVG   VG++++D +L +A PL  ++R  R   L         +G   P          L  ++KE+RA  ++VG+PL L   + SL+C ++  F+ +   E+  +++ P  + +E  TTQ+A +             +R   +G +R+    D+ AA +ILQ YL+ +   D+
Sbjct:    3 FLSPKQLGKVYRQI----ATIKPRLLGVDVGTMNVGIALSDPSLRMAIPLTTLNR--RDCCL---------KGPENP----------LVKILKENRAFAMIVGFPL-LLNDEESLQCEDIKLFVHSF--ETNTQIAFPVVLHNEAYTTQIAMDRFAHRR-------KRDWNRGLKRK----DEGAAAVILQEYLDYYNPADV 165          
BLAST of EWM26249.1 vs. NCBI_GenBank
Match: gi|1130899838|ref|WP_075669671.1| (Holliday junction resolvase RuvX [Anaerostipes sp. 992a] >gi|1129784459|gb|OLR63882.1| Holliday junction DNA helicase RuvA [Anaerostipes sp. 992a])

HSP 1 Score: 70.0922 bits (170), Expect = 1.148e-11
Identity = 54/172 (31.40%), Postives = 79/172 (45.93%), Query Frame = 0
Query:   57 LLGLDVGDSKVGVSIADRTLTLAQPLARIDRPARRSLLFGQAPGGADRGRRQPETFPALCGRLLSGLIKEHRAAGLVVGYPLTLWEGKPSLRCREVLAFMGAVYKESWE-ELSVPFAVWDERMTTQMAREALRGEEVEDGGGFRRGKRKGERRRQALEDQVAATIILQSYLE 227
            L+GLD G   VGV+++D  +  AQP+  I R +   L    A                     +  L++EH    +V+GYP  +      +R  E L F     KE  E  + +P  +WDER+TT      +  E +   GG RR  RK       + DQ+AA+IILQSY++
Sbjct:    3 LMGLDYGTKTVGVAVSDGLMLTAQPVETITRKSSNKLRKTLAR--------------------IEALVQEHGIEKIVLGYPKNM-NNTLGVRVEETLEF-----KEMLERRMGLPVVLWDERLTT------MESERILMAGGVRRENRKD------VIDQLAASIILQSYMD 136          
BLAST of EWM26249.1 vs. NCBI_GenBank
Match: gi|736530757|ref|WP_034545564.1| (Holliday junction resolvase RuvX [Tissierellia bacterium S7-1-4] >gi|690759678|gb|KGF08160.1| hypothetical protein HMPREF1634_02230 [Tissierellia bacterium S7-1-4])

HSP 1 Score: 69.707 bits (169), Expect = 1.327e-11
Identity = 51/173 (29.48%), Postives = 87/173 (50.29%), Query Frame = 0
Query:   57 LLGLDVGDSKVGVSIADRTLTLAQPLARIDRPARRSLLFGQAPGGADRGRRQPETFPALCGRLLSGLIKEHRAAGLVVGYPLTLWEGKPSLRCREVLAFMGAVYKESWEELSVPFAVWDERMTTQMAREALRGEEVEDGGGFRRGKRKGERRRQALEDQVAATIILQSYLERH 229
            +L +D+G+S VG++++D T T A P+  I R +++          +D+ ++               +++E     LV G PL + EG  S +   V+ F+  +YKE+     +     DER TT+MA + L+   V      +RGK+KG       ED +AA+ IL+ YL++H
Sbjct:    5 ILSMDIGESSVGLAVSDPTGTFAIPIGTIKRGSKKE--------DSDKIKK---------------IMEERNVDTLVAGMPLDM-EGNRSKQASIVMTFVKFLYKET----GIKTEFVDERYTTKMANDTLKFLNV------KRGKQKGA------EDALAASYILEIYLKKH 137          
The following BLAST results are available for this feature:
BLAST of EWM26249.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108248|gb|EWM26249.1|6.141e-168100.00holliday junction resolvase [Nannochloropsis gadit... [more]
gi|931385002|gb|KPJ74980.1|1.436e-1535.67hypothetical protein AMS14_04495 [Planctomycetes b... [more]
gi|493609986|ref|WP_006562377.1|7.318e-1433.71Holliday junction resolvase RuvX [Oscillochloris t... [more]
gi|1084596542|gb|OGO50819.1|4.951e-1335.59hypothetical protein A2148_03885 [Chloroflexi bact... [more]
gi|1124504508|ref|WP_074788999.1|2.225e-1231.61Holliday junction resolvase RuvX [Pseudobutyrivibr... [more]
gi|931398605|gb|KPJ87470.1|2.871e-1232.95hypothetical protein AMS18_14585 [Gemmatimonas sp.... [more]
gi|524728676|emb|CDE34334.1|6.153e-1230.46putative Holliday junction resolvase [Ruminococcus... [more]
gi|1032153476|gb|OAO16804.1|1.104e-1128.22RNAse H-fold protein [Blastocystis sp. ATCC 50177/... [more]
gi|1130899838|ref|WP_075669671.1|1.148e-1131.40Holliday junction resolvase RuvX [Anaerostipes sp.... [more]
gi|736530757|ref|WP_034545564.1|1.327e-1129.48Holliday junction resolvase RuvX [Tissierellia bac... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4427rna4427Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications