EWM26249.1, cds4416 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26249.1 vs. NCBI_GenBank
Match: gi|585108248|gb|EWM26249.1| (holliday junction resolvase [Nannochloropsis gaditana]) HSP 1 Score: 471.085 bits (1211), Expect = 6.141e-168 Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 0
Query: 1 MGLLLTLQPSDDHSVPTTMPYLSSPHSTRLVKFLRPEALAAYLRHVRSTSAGASAVLLGLDVGDSKVGVSIADRTLTLAQPLARIDRPARRSLLFGQAPGGADRGRRQPETFPALCGRLLSGLIKEHRAAGLVVGYPLTLWEGKPSLRCREVLAFMGAVYKESWEELSVPFAVWDERMTTQMAREALRGEEVEDGGGFRRGKRKGERRRQALEDQVAATIILQSYLERHIRPDIA 235
MGLLLTLQPSDDHSVPTTMPYLSSPHSTRLVKFLRPEALAAYLRHVRSTSAGASAVLLGLDVGDSKVGVSIADRTLTLAQPLARIDRPARRSLLFGQAPGGADRGRRQPETFPALCGRLLSGLIKEHRAAGLVVGYPLTLWEGKPSLRCREVLAFMGAVYKESWEELSVPFAVWDERMTTQMAREALRGEEVEDGGGFRRGKRKGERRRQALEDQVAATIILQSYLERHIRPDIA
Sbjct: 1 MGLLLTLQPSDDHSVPTTMPYLSSPHSTRLVKFLRPEALAAYLRHVRSTSAGASAVLLGLDVGDSKVGVSIADRTLTLAQPLARIDRPARRSLLFGQAPGGADRGRRQPETFPALCGRLLSGLIKEHRAAGLVVGYPLTLWEGKPSLRCREVLAFMGAVYKESWEELSVPFAVWDERMTTQMAREALRGEEVEDGGGFRRGKRKGERRRQALEDQVAATIILQSYLERHIRPDIA 235
BLAST of EWM26249.1 vs. NCBI_GenBank
Match: gi|931385002|gb|KPJ74980.1| (hypothetical protein AMS14_04495 [Planctomycetes bacterium DG_20]) HSP 1 Score: 80.4925 bits (197), Expect = 1.436e-15 Identity = 61/171 (35.67%), Postives = 85/171 (49.71%), Query Frame = 0
Query: 57 LLGLDVGDSKVGVSIADRTLTLAQPLARIDRPARRSLLFGQAPGGADRGRRQPETFPALCGRLLSGLIKEHRAAGLVVGYPLTLWEGKPSLRCREVLAFMGAVYKESWEELSVPFAVWDERMTTQMAREALRGEEVEDGGGFRRGKRKGERRRQALEDQVAATIILQSYLE 227
+LGLD+G +VGV+++D T+A PL + + RR L+ + GL+ E AA +VVG P+ L +G+ + R A + A+ E L VP A WDER TT+ A EA+R G GKRK R D+VAA +ILQSYL+
Sbjct: 3 ILGLDLGRRRVGVAVSDPNGTIAHPLLQFEPKGRRDLVA-----------------------TVKGLVAEQEAARVVVGMPV-LVDGRKGEQARWTQATVSALA----EALEVPVATWDERFTTRDAEEAMR------DAGLHPGKRKARR------DKVAAALILQSYLD 133
BLAST of EWM26249.1 vs. NCBI_GenBank
Match: gi|493609986|ref|WP_006562377.1| (Holliday junction resolvase RuvX [Oscillochloris trichoides] >gi|308226652|gb|EFO80357.1| Holliday junction resolvase YqgF [Oscillochloris trichoides DG-6]) HSP 1 Score: 76.2554 bits (186), Expect = 7.318e-14 Identity = 59/175 (33.71%), Postives = 89/175 (50.86%), Query Frame = 0
Query: 57 LLGLDVGDSKVGVSIADRTLTLAQPLARIDRPARRSLLFGQAPGGADRGRRQPETFPALCGRLLSGLIKEHRAAGLVVGYPLTLWEGKPSLRCREVLAFMGAVYKESWEELSVPFAVWDERMTTQMAREALRGEEVEDGGGFRRGKRKGERRRQALEDQVAATIILQSYLERHIR 231
LLGLDVGD ++GV+++D LA PL I+ R + +++ L++EH G+VVG PLTL G+ + + +F +E ++ +P ++DER TT +A + LR V K E+R+Q + DQVAA+IILQ YL+ HIR
Sbjct: 6 LLGLDVGDRRIGVALSDALGMLASPLTTINANPRSQAI-----------------------TMIARLVREHEVQGIVVGLPLTL-RGEIGPQAEQTRSFA----QELERQVGLPVMLFDERYTTTVAEQLLREMGV-----------KPEKRKQQI-DQVAASIILQDYLD-HIR 139
BLAST of EWM26249.1 vs. NCBI_GenBank
Match: gi|1084596542|gb|OGO50819.1| (hypothetical protein A2148_03885 [Chloroflexi bacterium RBG_16_68_14]) HSP 1 Score: 73.9442 bits (180), Expect = 4.951e-13 Identity = 63/177 (35.59%), Postives = 88/177 (49.72%), Query Frame = 0
Query: 57 LLGLDVGDSKVGVSIADRTLTLAQPLARIDRPARRSLLFGQAPGGADRGRRQPETFPALCGRLLSGLIKEHRAAGLVVGYPLTLWEGKPSLRCREVLAFMGAVYKESWEELSVPFAVWDERMTTQMAREALRGEEVEDGGGFRRGKRKGERRRQALEDQVAATIILQSYLERHIRPD 233
+LGLDVG++++G++I+ LA PL +L Q A R +S L + LVVG+PL+L +G + R V AF + +ES +P +WDER+T+ A A G RR + KG RRR+ D VAA IILQSYL+RH RP+
Sbjct: 4 ILGLDVGEARIGIAISAPEGRLAVPL---------RILECQGD--------------AADARAISDLARAEGVEALVVGHPLSL-DGSVGPQARRVEAFARRLAQES----GLPLELWDERLTSVQAERAPMGS--------RRREAKGARRRRQPADDVAAAIILQSYLDRH-RPE 143
BLAST of EWM26249.1 vs. NCBI_GenBank
Match: gi|1124504508|ref|WP_074788999.1| (Holliday junction resolvase RuvX [Pseudobutyrivibrio ruminis] >gi|1094269917|emb|SEK31399.1| putative holliday junction resolvase [Pseudobutyrivibrio ruminis]) HSP 1 Score: 72.0182 bits (175), Expect = 2.225e-12 Identity = 55/174 (31.61%), Postives = 81/174 (46.55%), Query Frame = 0
Query: 57 LLGLDVGDSKVGVSIADRTLTLAQPLARIDRPARRSLLFGQAPGGADRGRRQPETFPALCGRLLSGLIKEHRAAGLVVGYPLTLWEGKPSLRCREVLAFMGAVYKESWEE-LSVPFAVWDERMTTQMAREALRGEEVEDGGGFRRGKRKGERRRQALEDQVAATIILQSYLERH 229
+LGLD G VGV+I+D L AQ L I R DR + T + L E++ + +V+GYPL + + RC + + F KE E+ + +P + DER+TT A E L E+ G ++ ++K DQ+AA IILQ YL+ H
Sbjct: 5 ILGLDYGTKTVGVAISDPLLLTAQELETITR---------------DRASKLRHTLVH-----IKELCDEYQVSTIVLGYPLNM-DDSEGFRCEDTIKF-----KELLEKRVDIPIVLIDERLTTMYADEIL-----EESGVDKKDRKK-------FIDQIAAAIILQDYLDNH 140
BLAST of EWM26249.1 vs. NCBI_GenBank
Match: gi|931398605|gb|KPJ87470.1| (hypothetical protein AMS18_14585 [Gemmatimonas sp. SG8_17]) HSP 1 Score: 71.633 bits (174), Expect = 2.871e-12 Identity = 57/173 (32.95%), Postives = 83/173 (47.98%), Query Frame = 0
Query: 57 LLGLDVGDSKVGVSIADRTLTLAQPLARIDRPARRSLLFGQAPGGADRGRRQPETFPALCGRLLSGLIKEHRAAGLVVGYPLTL--WEGKPSLRCREVLAFMGAVYKESWEELSVPFAVWDERMTTQMAREALRGEEVEDGGGFRRGKRKGERRRQALEDQVAATIILQSYLE 227
+L +DVGD ++G++++D T TLAQPLA + R + G+ L I HR L++G PLT E + +L R+V A + E+ +P A WDERM+T A+R E GG RKG+ DQ+AAT+ LQ+YL+
Sbjct: 7 VLAIDVGDKRIGLALSDPTQTLAQPLATLTRRVGKRFPMGK----------------------LKQFIDTHRPVALLLGLPLTPEGSEEERALAVRQVGALL-------LEKAELPIAYWDERMSTARVHSAVR----ESGGTL---GRKGD------VDQLAATVFLQTYLD 137
BLAST of EWM26249.1 vs. NCBI_GenBank
Match: gi|524728676|emb|CDE34334.1| (putative Holliday junction resolvase [Ruminococcus sp. CAG:403]) HSP 1 Score: 70.8626 bits (172), Expect = 6.153e-12 Identity = 53/174 (30.46%), Postives = 82/174 (47.13%), Query Frame = 0
Query: 56 VLLGLDVGDSKVGVSIADRTLTLAQPLARIDRPARRSLLFGQAPGGADRGRRQPETFPALCGRLLSGLIKEHRAAGLVVGYPLTL--WEGKPSLRCREVLAFMGAVYKESWEELS-VPFAVWDERMTTQMAREALRGEEVEDGGGFRRGKRKGERRRQALEDQVAATIILQSYL 226
+++G+D GD++ G++I D+ LA P+ I ET C ++ L E++ LVVGYP + G+ + +C+ ++ S EL+ +PF +WDER TT A + L RGK +R+A+ D VAATIIL+SYL
Sbjct: 2 IIMGIDFGDARTGIAICDKNELLASPICVIH-----------------------ETDWQACMDQIAKLTAEYKVEQLVVGYPKNMNGTVGERAEKCQ--------LFASSLSELTNLPFVMWDERCTTVSAHQYLNVTNT-------RGK-----KRKAVVDAVAATIILESYL 132
BLAST of EWM26249.1 vs. NCBI_GenBank
Match: gi|1032153476|gb|OAO16804.1| (RNAse H-fold protein [Blastocystis sp. ATCC 50177/Nand II]) HSP 1 Score: 70.8626 bits (172), Expect = 1.104e-11 Identity = 57/202 (28.22%), Postives = 98/202 (48.51%), Query Frame = 0
Query: 33 FLRPEALAAYLRHVRSTSAGASAVLLGLDVGDSKVGVSIADRTLTLAQPLARIDRPARRSLLFGQAPGGADRGRRQPETFPALCGRLLSGLIKEHRAAGLVVGYPLTLWEGKPSLRCREVLAFMGAVYKESWEELSVPFAVWDERMTTQMAREALRGEEVEDGGGFRRGKRKGERRRQALEDQVAATIILQSYLERHIRPDI 234
FL P+ L R + A LLG+DVG VG++++D +L +A PL ++R R L +G P L ++KE+RA ++VG+PL L + SL+C ++ F+ + E+ +++ P + +E TTQ+A + +R +G +R+ D+ AA +ILQ YL+ + D+
Sbjct: 3 FLSPKQLGKVYRQI----ATIKPRLLGVDVGTMNVGIALSDPSLRMAIPLTTLNR--RDCCL---------KGPENP----------LVKILKENRAFAMIVGFPL-LLNDEESLQCEDIKLFVHSF--ETNTQIAFPVVLHNEAYTTQIAMDRFAHRR-------KRDWNRGLKRK----DEGAAAVILQEYLDYYNPADV 165
BLAST of EWM26249.1 vs. NCBI_GenBank
Match: gi|1130899838|ref|WP_075669671.1| (Holliday junction resolvase RuvX [Anaerostipes sp. 992a] >gi|1129784459|gb|OLR63882.1| Holliday junction DNA helicase RuvA [Anaerostipes sp. 992a]) HSP 1 Score: 70.0922 bits (170), Expect = 1.148e-11 Identity = 54/172 (31.40%), Postives = 79/172 (45.93%), Query Frame = 0
Query: 57 LLGLDVGDSKVGVSIADRTLTLAQPLARIDRPARRSLLFGQAPGGADRGRRQPETFPALCGRLLSGLIKEHRAAGLVVGYPLTLWEGKPSLRCREVLAFMGAVYKESWE-ELSVPFAVWDERMTTQMAREALRGEEVEDGGGFRRGKRKGERRRQALEDQVAATIILQSYLE 227
L+GLD G VGV+++D + AQP+ I R + L A + L++EH +V+GYP + +R E L F KE E + +P +WDER+TT + E + GG RR RK + DQ+AA+IILQSY++
Sbjct: 3 LMGLDYGTKTVGVAVSDGLMLTAQPVETITRKSSNKLRKTLAR--------------------IEALVQEHGIEKIVLGYPKNM-NNTLGVRVEETLEF-----KEMLERRMGLPVVLWDERLTT------MESERILMAGGVRRENRKD------VIDQLAASIILQSYMD 136
BLAST of EWM26249.1 vs. NCBI_GenBank
Match: gi|736530757|ref|WP_034545564.1| (Holliday junction resolvase RuvX [Tissierellia bacterium S7-1-4] >gi|690759678|gb|KGF08160.1| hypothetical protein HMPREF1634_02230 [Tissierellia bacterium S7-1-4]) HSP 1 Score: 69.707 bits (169), Expect = 1.327e-11 Identity = 51/173 (29.48%), Postives = 87/173 (50.29%), Query Frame = 0
Query: 57 LLGLDVGDSKVGVSIADRTLTLAQPLARIDRPARRSLLFGQAPGGADRGRRQPETFPALCGRLLSGLIKEHRAAGLVVGYPLTLWEGKPSLRCREVLAFMGAVYKESWEELSVPFAVWDERMTTQMAREALRGEEVEDGGGFRRGKRKGERRRQALEDQVAATIILQSYLERH 229
+L +D+G+S VG++++D T T A P+ I R +++ +D+ ++ +++E LV G PL + EG S + V+ F+ +YKE+ + DER TT+MA + L+ V +RGK+KG ED +AA+ IL+ YL++H
Sbjct: 5 ILSMDIGESSVGLAVSDPTGTFAIPIGTIKRGSKKE--------DSDKIKK---------------IMEERNVDTLVAGMPLDM-EGNRSKQASIVMTFVKFLYKET----GIKTEFVDERYTTKMANDTLKFLNV------KRGKQKGA------EDALAASYILEIYLKKH 137 The following BLAST results are available for this feature:
BLAST of EWM26249.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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