rna4426, rna4426 (mRNA) Nannochloropsis gaditana

Overview
Namerna4426
Unique Namerna4426
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length869
Alignment locationCM002463.1:570685..571194 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100025g68.7504.mrna
Orig protein idgnl|cribi|Naga_100025g68.7504
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:570685..571194 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100025g68gene4270Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4426rna4426-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26213.1cds4415Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4426 ID=rna4426|Name=rna4426|organism=Nannochloropsis gaditana|type=mRNA|length=869bp
GAATTTACCATTCGTACATTTGCACGTATCCTTGAACAGCTTTGGCGCCG
GCGATCTCATCCTCTTTCAAGGTCACTCTCCGCAACGGCAAGCCCCATTG
TTGCATTGTTTGTCAGCTGTAAGCGCTGGGAAATCCGTTTTAATATTCCA
CCGCTCGAAAATTTATCCGCGCGGGCTCCTCGTCACGCCTTGTGGATATA
GACCATGACAAGCTCGTACATTAATAGCTACGTGGGTGCCATTGACCAGG
GCACTTCGAGCACCAAGTTCATCATCTACAACCATAGCGGACAGCAGGTT
GGCTTGCATCAGCTTGAGCATGCGCAGATCTACCCGCAACCAGGATGGGT
CGAGCATGATCCCATGGAGATATGGGCTAACACGGTGACATGCATCCGTC
GGGCCATGGAGAGCGCGAACGTGGATGCGGAGCTATTGGAAGCGGTAGGG
ATCACGAACCAGCGGGAATCCACGTTGATTTGGAACAAGAAGACCGGCGT
CCCGTATTACAACGTGATTGTCTGGAACGACGCGCGCACTCGCGGCATTT
GCGAGGATCTCAAGACGGCCGGTCGGCGCGGCATAGACAGGTTTCGAGAG
AAAACGGGGTTGCCTATTGCCACCTATTTCTCCGCCAGCAAGATATTGTG
GCTTCTGGACAACGTGCCGGGACTGCGTGACGATGCTGAGAAAGGAGAGG
CTATTTTTGGGACGTTGGACTCCTGGCTCATCTACAAACTGACCGACGGA
CAGGTGCATAGCGGACCCTGCGTAGCATACCCCGGGGGTCTGTCTCCCTC
CTCCTTGTCGTCTGCTTTGCGTCCTCCCGCTTCCCCTCCCTCCCAAGCCC
CCTCCCTTTCCCCTGATCC
back to top

protein sequence of rna4426

>rna4426-protein ID=rna4426-protein|Name=rna4426|organism=Nannochloropsis gaditana|type=polypeptide|length=169bp
MASRGTPFRLEVDNCSCVAFSHRASRKSIHACLHFTISRPDTMSSLMATV
RDWQDRHRRFVKRVHAFRIPLSPPAKAVAQVVYFSIPLVAGYFIMGWATD
RAKAEIQYSDSNEAEETRIRRDASQGEEATRVFKAMRVDRGGGAIDEQIA
RQNLGLQSYLDSIRESGKK
back to top

mRNA from alignment at CM002463.1:570685..571194+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4426 ID=rna4426|Name=rna4426|organism=Nannochloropsis gaditana|type=mRNA|length=510bp|location=Sequence derived from alignment at CM002463.1:570685..571194+ (Nannochloropsis gaditana)
ATGGCGAGTCGAGGCACCCCATTCCGACTTGAGGTAGATAATTGCTCTTG
TGTCGCCTTTTCCCATAGAGCCTCAAGAAAAAGCATCCACGCCTGTCTCC
ACTTCACAATAAGCAGGCCTGACACCATGTCTTCCCTGATGGCCACAGTT
CGAGACTGGCAAGATCGCCACCGACGCTTTGTAAAGAGGGTGCACGCCTT
TCGCatccccctgtcccctcctGCCAAGGCCGTCGCCCAGGTCGTATatt
tttccatccctctcgtGGCGGGGTACTTCATAATGGGATGGGCCACTGAC
CGTGCCAAGGCTGAGATTCAATACAGCGACAGCAACGAGGCTGAAGAGAC
AAGGATACGCAGGGATGCCagtcaaggagaagaagccaCTCGGGTGTTTA
AAGCGATGCGCGTGgatcgagggggaggcgcgatAGACGAGCAGATTGCC
CGTCAAAATCTGGGGCTGCAGAGTTACCTTGACTCTATTCGAGAGTCGGG
GAAAAAGTGA
back to top

Coding sequence (CDS) from alignment at CM002463.1:570685..571194+

>rna4426 ID=rna4426|Name=rna4426|organism=Nannochloropsis gaditana|type=CDS|length=510bp|location=Sequence derived from alignment at CM002463.1:570685..571194+ (Nannochloropsis gaditana)
ATGGCGAGTCGAGGCACCCCATTCCGACTTGAGGTAGATAATTGCTCTTG
TGTCGCCTTTTCCCATAGAGCCTCAAGAAAAAGCATCCACGCCTGTCTCC
ACTTCACAATAAGCAGGCCTGACACCATGTCTTCCCTGATGGCCACAGTT
CGAGACTGGCAAGATCGCCACCGACGCTTTGTAAAGAGGGTGCACGCCTT
TCGCatccccctgtcccctcctGCCAAGGCCGTCGCCCAGGTCGTATatt
tttccatccctctcgtGGCGGGGTACTTCATAATGGGATGGGCCACTGAC
CGTGCCAAGGCTGAGATTCAATACAGCGACAGCAACGAGGCTGAAGAGAC
AAGGATACGCAGGGATGCCagtcaaggagaagaagccaCTCGGGTGTTTA
AAGCGATGCGCGTGgatcgagggggaggcgcgatAGACGAGCAGATTGCC
CGTCAAAATCTGGGGCTGCAGAGTTACCTTGACTCTATTCGAGAGTCGGG
GAAAAAGTGA
back to top
Synonyms
Publications