EWM26213.1, cds4415 (CDS) Nannochloropsis gaditana

Overview
NameEWM26213.1
Unique Namecds4415
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:570685..571194 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26213.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100025g68.7504.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:570685..571194 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0008121ubiquinol-cytochrome-c reductase activity
Vocabulary: INTERPRO
TermDefinition
IPR004205Cyt_bc1_su8
Homology
BLAST of EWM26213.1 vs. NCBI_GenBank
Match: gi|585108212|gb|EWM26213.1| (hypothetical protein Naga_100025g68 [Nannochloropsis gaditana])

HSP 1 Score: 351.673 bits (901), Expect = 7.964e-123
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 0
Query:    1 MASRGTPFRLEVDNCSCVAFSHRASRKSIHACLHFTISRPDTMSSLMATVRDWQDRHRRFVKRVHAFRIPLSPPAKAVAQVVYFSIPLVAGYFIMGWATDRAKAEIQYSDSNEAEETRIRRDASQGEEATRVFKAMRVDRGGGAIDEQIARQNLGLQSYLDSIRESGKK 169
            MASRGTPFRLEVDNCSCVAFSHRASRKSIHACLHFTISRPDTMSSLMATVRDWQDRHRRFVKRVHAFRIPLSPPAKAVAQVVYFSIPLVAGYFIMGWATDRAKAEIQYSDSNEAEETRIRRDASQGEEATRVFKAMRVDRGGGAIDEQIARQNLGLQSYLDSIRESGKK
Sbjct:    1 MASRGTPFRLEVDNCSCVAFSHRASRKSIHACLHFTISRPDTMSSLMATVRDWQDRHRRFVKRVHAFRIPLSPPAKAVAQVVYFSIPLVAGYFIMGWATDRAKAEIQYSDSNEAEETRIRRDASQGEEATRVFKAMRVDRGGGAIDEQIARQNLGLQSYLDSIRESGKK 169          
BLAST of EWM26213.1 vs. NCBI_GenBank
Match: gi|673027226|ref|XP_008867574.1| (hypothetical protein H310_04836 [Aphanomyces invadans] >gi|574476347|gb|ETW03345.1| hypothetical protein H310_04836 [Aphanomyces invadans])

HSP 1 Score: 75.8702 bits (185), Expect = 5.370e-15
Identity = 33/64 (51.56%), Postives = 43/64 (67.19%), Query Frame = 0
Query:   47 MATVRDWQDRHRRFVKRVHAFRIPLSPPAKAVAQVVYFSIPLVAGYFIMGWATDRAKAEIQYSD 110
            M  VRD+ D H R  KR+H+ RIPL P  KAV  VVYF+ P++ GYF+M WA  ++KAE+   D
Sbjct:    1 MGVVRDFLDAHERLKKRIHSTRIPLGPKGKAVMTVVYFTTPIICGYFVMQWA--QSKAEVNLKD 62          
BLAST of EWM26213.1 vs. NCBI_GenBank
Match: gi|698784617|ref|XP_009825352.1| (hypothetical protein H257_03100 [Aphanomyces astaci] >gi|574119855|gb|ETV85334.1| hypothetical protein H257_03100 [Aphanomyces astaci])

HSP 1 Score: 72.7886 bits (177), Expect = 8.031e-14
Identity = 32/64 (50.00%), Postives = 41/64 (64.06%), Query Frame = 0
Query:   47 MATVRDWQDRHRRFVKRVHAFRIPLSPPAKAVAQVVYFSIPLVAGYFIMGWATDRAKAEIQYSD 110
            M   RD+ D H R  KR+H+ RIPL P  KAV   VYF+ P+V GYF+M WA  ++KAE+   D
Sbjct:    1 MGVFRDFVDAHERLKKRIHSTRIPLGPKGKAVMTAVYFTTPIVCGYFVMQWA--QSKAEVNLKD 62          
BLAST of EWM26213.1 vs. NCBI_GenBank
Match: gi|570984315|gb|ETP43953.1| (hypothetical protein F442_09412 [Phytophthora parasitica P10297])

HSP 1 Score: 67.0106 bits (162), Expect = 1.463e-11
Identity = 32/77 (41.56%), Postives = 45/77 (58.44%), Query Frame = 0
Query:   47 MATVRDWQDRHRRFVKRVHAFRIPLSPPAKAVAQVVYFSIPLVAGYFIMGWATDRAKAEIQYSDSNEAEETRIRRDA 123
            M  +R   +RH    K++H+ RIPLS   + V  +VYF+ P++ GY++M WA +RA A  Q       EET IRR A
Sbjct:    1 MEFLRRLGERHEALKKKIHSTRIPLSKSGQRVMGLVYFTTPIIGGYYVMKWAENRADANFQ------REETEIRRAA 71          
BLAST of EWM26213.1 vs. NCBI_GenBank
Match: gi|568018423|gb|ETL92597.1| (hypothetical protein L917_09134 [Phytophthora parasitica])

HSP 1 Score: 66.2402 bits (160), Expect = 2.443e-11
Identity = 32/77 (41.56%), Postives = 44/77 (57.14%), Query Frame = 0
Query:   47 MATVRDWQDRHRRFVKRVHAFRIPLSPPAKAVAQVVYFSIPLVAGYFIMGWATDRAKAEIQYSDSNEAEETRIRRDA 123
            M  +R   +RH    K++H+ RIPLS   + V  +VYF+ P++ GY++M WA  RA A  Q       EET IRR A
Sbjct:    1 MEFLRRLGERHEALKKKIHSTRIPLSKSGQRVMGLVYFTTPIIGGYYVMKWAESRADANFQ------LEETEIRRAA 71          
BLAST of EWM26213.1 vs. NCBI_GenBank
Match: gi|566023170|gb|ETI46081.1| (hypothetical protein F443_09497 [Phytophthora parasitica P1569] >gi|567960477|gb|ETK86034.1| hypothetical protein L915_09305 [Phytophthora parasitica] >gi|567989199|gb|ETL39464.1| hypothetical protein L916_09210 [Phytophthora parasitica] >gi|568048859|gb|ETM45887.1| hypothetical protein L914_09166 [Phytophthora parasitica] >gi|570326819|gb|ETO74767.1| hypothetical protein F444_09567 [Phytophthora parasitica P1976] >gi|570950645|gb|ETP15902.1| hypothetical protein F441_09442 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 65.855 bits (159), Expect = 3.587e-11
Identity = 32/77 (41.56%), Postives = 44/77 (57.14%), Query Frame = 0
Query:   47 MATVRDWQDRHRRFVKRVHAFRIPLSPPAKAVAQVVYFSIPLVAGYFIMGWATDRAKAEIQYSDSNEAEETRIRRDA 123
            M  +R   +RH    K++H+ RIPLS   + V  +VYF+ P++ GY++M WA  RA A  Q       EET IRR A
Sbjct:    1 MEFLRRLGERHEALKKKIHSTRIPLSKSGQRVMGLVYFTTPIIGGYYVMKWAESRADANFQ------REETEIRRAA 71          
BLAST of EWM26213.1 vs. NCBI_GenBank
Match: gi|299469900|emb|CBN76754.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 65.855 bits (159), Expect = 4.021e-11
Identity = 24/60 (40.00%), Postives = 40/60 (66.67%), Query Frame = 0
Query:   47 MATVRDWQDRHRRFVKRVHAFRIPLSPPAKAVAQVVYFSIPLVAGYFIMGWATDRAKAEI 106
            M  + D+   H+R  +R+H FR+PLS P +    +VYFSIP++ G+++M WA +RA+  +
Sbjct:    1 MGIMDDFSSGHQRLKERIHNFRMPLSRPGRIAMNIVYFSIPVIGGHYLMQWAQERAQVNL 60          
BLAST of EWM26213.1 vs. NCBI_GenBank
Match: gi|669139182|ref|XP_008605159.1| (hypothetical protein SDRG_01413 [Saprolegnia diclina VS20] >gi|530743203|gb|EQC41445.1| hypothetical protein SDRG_01413 [Saprolegnia diclina VS20])

HSP 1 Score: 65.4698 bits (158), Expect = 5.063e-11
Identity = 31/82 (37.80%), Postives = 46/82 (56.10%), Query Frame = 0
Query:   47 MATVRDWQDRHRRFVKRVHAFRIPLSPPAKAVAQVVYFSIPLVAGYFIMGWATDRAKAEIQ--YSDSNEAEETRIRRDASQG 126
            M  +RD  D H R  KR+H  RIPLSP      +VVYF+ P++ GYF+M WA  R+ A ++  ++       T  + D+ +G
Sbjct:    1 MGWLRDLGDAHTRLKKRIHGTRIPLSPAGIRFMKVVYFTTPIIGGYFVMQWAQARSVANLRDLHAPPPTQNPTSYQNDSLKG 82          
BLAST of EWM26213.1 vs. NCBI_GenBank
Match: gi|813109173|ref|XP_012194487.1| (hypothetical protein SPRG_00884 [Saprolegnia parasitica CBS 223.65] >gi|641541060|gb|KDO34823.1| hypothetical protein SPRG_00884 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 69.707 bits (169), Expect = 6.285e-11
Identity = 29/61 (47.54%), Postives = 39/61 (63.93%), Query Frame = 0
Query:   47 MATVRDWQDRHRRFVKRVHAFRIPLSPPAKAVAQVVYFSIPLVAGYFIMGWATDRAKAEIQ 107
            M  +RD  D H R  KR+H  RIPLSP    V +VVYF+ P++ GYF+M WA  R+ A ++
Sbjct:    1 MGWLRDLSDAHTRLKKRIHGTRIPLSPAGIRVMKVVYFTTPIIGGYFVMQWAQARSAANLR 61          
BLAST of EWM26213.1 vs. NCBI_GenBank
Match: gi|1214706741|gb|OWZ18241.1| (hypothetical protein PHMEG_0007710 [Phytophthora megakarya])

HSP 1 Score: 65.0846 bits (157), Expect = 8.243e-11
Identity = 33/78 (42.31%), Postives = 43/78 (55.13%), Query Frame = 0
Query:   47 MATVRDWQDRHRRFVKRVHAFRIPLSPPAKAVAQVVYFSIPLVAGYFIMGWATDRAKAEIQYSDSNEAEETRIRRDAS 124
            M   R   +RH    K++H+ RIPLS   + V  +VYF+ P++ GY+IM WA  RA A  Q       EET IRR A 
Sbjct:    1 MEFFRQLGERHEALKKKIHSTRIPLSKNGQRVMGLVYFTTPIIGGYYIMKWAECRADANFQ------REETEIRRAAG 72          
The following BLAST results are available for this feature:
BLAST of EWM26213.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108212|gb|EWM26213.1|7.964e-123100.00hypothetical protein Naga_100025g68 [Nannochlorops... [more]
gi|673027226|ref|XP_008867574.1|5.370e-1551.56hypothetical protein H310_04836 [Aphanomyces invad... [more]
gi|698784617|ref|XP_009825352.1|8.031e-1450.00hypothetical protein H257_03100 [Aphanomyces astac... [more]
gi|570984315|gb|ETP43953.1|1.463e-1141.56hypothetical protein F442_09412 [Phytophthora para... [more]
gi|568018423|gb|ETL92597.1|2.443e-1141.56hypothetical protein L917_09134 [Phytophthora para... [more]
gi|566023170|gb|ETI46081.1|3.587e-1141.56hypothetical protein F443_09497 [Phytophthora para... [more]
gi|299469900|emb|CBN76754.1|4.021e-1140.00conserved unknown protein [Ectocarpus siliculosus][more]
gi|669139182|ref|XP_008605159.1|5.063e-1137.80hypothetical protein SDRG_01413 [Saprolegnia dicli... [more]
gi|813109173|ref|XP_012194487.1|6.285e-1147.54hypothetical protein SPRG_00884 [Saprolegnia paras... [more]
gi|1214706741|gb|OWZ18241.1|8.243e-1142.31hypothetical protein PHMEG_0007710 [Phytophthora m... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4426rna4426Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications