rna4425, rna4425 (mRNA) Nannochloropsis gaditana

Overview
Namerna4425
Unique Namerna4425
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length474
Alignment locationCM002463.1:569565..570433 -

Link to JBrowse

Properties
Property NameValue
Productglycerol kinase
Orig transcript idgnl|cribi|Naga_100025g69.7490.mrna
Orig protein idgnl|cribi|Naga_100025g69.7490
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:569565..570433 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100025g69gene4269Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26199.1cds4414Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4425rna4425-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4425 ID=rna4425|Name=rna4425|organism=Nannochloropsis gaditana|type=mRNA|length=474bp
ATGCCCCGGACCAAGTGGGGCAACAAAGCGAAAAGACAAGATACTCTCGC
TTACCCTCATCTTCCTTGCAAGGATAAATTTCAGAGCAACCAAATACGGG
ATTCAACTATGTCTGTGAACGAGCATCGCCCCCAACCTGCTGAAAAAAAA
TTTGAGTCGCTCGAATACACAGACGAGCATTCTCGAACTTTTGTGTTCGG
TGACGAGGATCATACGCTGGGCAACTCTTTAAGACATGTGCTGATGGGCC
GCAAGGAGACGAGGTTTTGTGGCTACAGCGTCCCTCACCCCTCCGAACCG
AAGATGAACATCCGGCTTCAGACATCTGCGACCAAACCAGCCTTGCAGGT
GCTAAAAGACGGGCTGCATGAAATGGTGGAGATTTGTGACCTTTTTGACT
TTACTTTGGACAGAGCCATAAGTGACTACGAAGAGCAGCAAGCAGACTCA
ACGGACGAGCGCGGAATTCACTAG
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protein sequence of rna4425

>rna4425-protein ID=rna4425-protein|Name=rna4425|organism=Nannochloropsis gaditana|type=polypeptide|length=222bp
MTSSYINSYVGAIDQGTSSTKFIIYNHSGQQVGLHQLEHAQIYPQPGWVE
HDPMEIWANTVTCIRRAMESANVDAELLEAVGITNQRESTLIWNKKTGVP
YYNVIVWNDARTRGICEDLKTAGRRGIDRFREKTGLPIATYFSASKILWL
LDNVPGLRDDAEKGEAIFGTLDSWLIYKLTDGQVHSGPCVAYPGGLSPSS
LSSALRPPASPPSQAPSLSPDP
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mRNA from alignment at CM002463.1:569565..570433-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4425 ID=rna4425|Name=rna4425|organism=Nannochloropsis gaditana|type=mRNA|length=869bp|location=Sequence derived from alignment at CM002463.1:569565..570433- (Nannochloropsis gaditana)
GAATTTACCATTCGTACATTTGCACGTATCCTTGAACAGCTTTGGCGCCG GCGATCTCATCCTCTTTCAAGGTCACTCTCCGCAACGGCAAGCCCCATTG TTGCATTGTTTGTCAGCTGTAAGCGCTGGGAAATCCGTTTTAATATTCCA CCGCTCGAAAATTTATCCGCGCGGGCTCCTCGTCACGCCTTGTGGATATA GACCATGACAAGCTCGTACATTAATAGCTACGTGGGTGCCATTGACCAGG GCACTTCGAGCACCAAGTTCATCATCTACAACCATAGCGGACAGCAGGTT GGCTTGCATCAGCTTGAGCATGCGCAGATCTACCCGCAACCAGGATGGGT CGAGCATGATCCCATGGAGATATGGGCTAACACGGTGACATGCATCCGTC GGGCCATGGAGAGCGCGAACGTGGATGCGGAGCTATTGGAAGCGGTAGGG ATCACGAACCAGCGGGAATCCACGTTGATTTGGAACAAGAAGACCGGCGT CCCGTATTACAACGTGATTGTCTGGAACGACGCGCGCACTCGCGGCATTT GCGAGGATCTCAAGACGGCCGGTCGGCGCGGCATAGACAGGTTTCGAGAG AAAACGGGGTTGCCTATTGCCACCTATTTCTCCGCCAGCAAGATATTGTG GCTTCTGGACAACGTGCCGGGACTGCGTGACGATGCTGAGAAAGGAGAGG CTATTTTTGGGACGTTGGACTCCTGGCTCATCTACAAACTGACCGACGGA CAGGTGCATAGCGGACCCTGCGTAGCATACCCCGGGGGTCTGTCTCCCTC CTCCTTGTCGTCTGCTTTGCGTCCTCCCGCTTCCCCTCCCTCCCAAGCCC CCTCCCTTTCCCCTGATCC
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Coding sequence (CDS) from alignment at CM002463.1:569565..570433-

>rna4425 ID=rna4425|Name=rna4425|organism=Nannochloropsis gaditana|type=CDS|length=665bp|location=Sequence derived from alignment at CM002463.1:569565..570433- (Nannochloropsis gaditana)
ATGACAAGCTCGTACATTAATAGCTACGTGGGTGCCATTGACCAGGGCAC
TTCGAGCACCAAGTTCATCATCTACAACCATAGCGGACAGCAGGTTGGCT
TGCATCAGCTTGAGCATGCGCAGATCTACCCGCAACCAGGATGGGTCGAG
CATGATCCCATGGAGATATGGGCTAACACGGTGACATGCATCCGTCGGGC
CATGGAGAGCGCGAACGTGGATGCGGAGCTATTGGAAGCGGTAGGGATCA
CGAACCAGCGGGAATCCACGTTGATTTGGAACAAGAAGACCGGCGTCCCG
TATTACAACGTGATTGTCTGGAACGACGCGCGCACTCGCGGCATTTGCGA
GGATCTCAAGACGGCCGGTCGGCGCGGCATAGACAGGTTTCGAGAGAAAA
CGGGGTTGCCTATTGCCACCTATTTCTCCGCCAGCAAGATATTGTGGCTT
CTGGACAACGTGCCGGGACTGCGTGACGATGCTGAGAAAGGAGAGGCTAT
TTTTGGGACGTTGGACTCCTGGCTCATCTACAAACTGACCGACGGACAGG
TGCATAGCGGACCCTGCGTAGCATACCCCGGGGGTCTGTCTCCCTCCTCC
TTGTCGTCTGCTTTGCGTCCTCCCGCTTCCCCTCCCTCCCAAGCCCCCTC
CCTTTCCCCTGATCC
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Synonyms
Publications