rna4421, rna4421 (mRNA) Nannochloropsis gaditana

Overview
Namerna4421
Unique Namerna4421
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1791
Alignment locationCM002463.1:560390..561578 -

Link to JBrowse

Properties
Property NameValue
ProductVesicle transport protein, Got1/SFT2
Orig transcript idgnl|cribi|Naga_100145g4.9668.mrna
Orig protein idgnl|cribi|Naga_100145g4.9668
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:560390..561578 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100145g4gene4264Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4421rna4421-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26260.1cds4411Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4421 ID=rna4421|Name=rna4421|organism=Nannochloropsis gaditana|type=mRNA|length=1791bp
AGCGGGATCGGGTGCACGCTACAGGGCAGTACATCAGAAAAGCAAGGGGG
GCATAGCAAACTTGAGACGTCTTTTTCCATCGCCGGTCTGACTCACACAA
AAGTAGTCGCTCGTGGTTTTAAGTTATACATGGCGCCATTACGCCTGCAC
GTCGGACTGCCGGAGCATTCACGTGCTTTAGCGGCGCGAGGATCCTCTCG
CACGGGCGAGAGCATGCATCTGCTTCAAGGTGTCAAGCCGACGGCGCCGT
CTGCGGCCTCGCGTGTCAATAATGAAAGAAAAGCTCCACATCCTGCATCA
TGAAGCGAGAGGAATGCATGTGTGTCATTGCTTCATCTTTTTTCGAAGGT
CGTGTTGAACACTGTGGGCTAGGCTAAGCACTTTGACCTCTCAGAGGCAA
CCTCCCACCCGATCCCTTCCCCCCCCAACTATTCTGTAGTGAGATCCTGG
GGTAGCCCTTTTCACATTGATCACGTGATTTTGGATAAATAACCACGCAC
TTTTGGAAGCCAACTAGCACGCGCCCAGCAAGGGAAAAGCTCTGAAAAGA
GGAAATCAAGAAGAAAACGAAAAAATATGCAGGGTAAAGACTTCAAAATT
ATGCGTCGTAACAGTCTCACCGCTGAAGTGGACGGAGTGTGGCCCAATTT
GGAGGAAGAGGAAGACTCTTACGTCCCCCATAAGGTGCATATGAAAGAAT
GTATGATGCTCCGCCGTGTGCTCGGGGCAGACAAAGCGGATTCCCTCCCT
CGGGCGTGCAAACTCAATGCGACCTCGCAGGCCAACCAAGGTTTCCTGAC
CCGACTCTCACACTTTAACGAGAGTTCCGACGTAGCCGGGGTGGTCAATA
TCAAGGAATGCCACAAACTGCAAGACAGCCTGCGCATGGTGGCCGGGGGA
GTGACGTTTTTGCCCGCATCGTGTAACGCCATGCTGGCGAAGGAGGAGGA
GACGCTCAAAGACAAGTTTGAGACGGAGAACGCCAAGGTCTACGCGCGAC
TGAAGCGTCGCAACAGCTGGGTGGGTAAGGAGGATTTCCCACCCACTGCC
ACGTAAAGCCATGTGGGTGTGGGGAAGGGACATAAGGAAATGAAAGGCGA
GAAGGAGAGGGTGTCAGCGTGATGGTCGATTGGGATGTGTGCCTGGGGGC
GAGTCAGGAGGAAGCAGGCGGGTGGAGGGATACGCGACTGTCACGAAGGA
ATTGCATAGATAGTGCTTGCCAAGGGAGAGGATGTGTGCCCTGGAGATCC
GCTCTGCTTTCTGGGCGAGACCCATCACCCACTGCCCCGGGCCGTAGGAC
AAAGGACTAAGGGGCGCGGTCATTGGAGAATCGTGCGTGAAGATAGGCTA
TCGCAAAGGCCGTAAGAGAGGAGGAGGCTTAAAGAAAGAATGGACAGGCT
TGCAGGGCGAGAAGGGCTTGAGATTGCAGTTTTACAAAATGGCTGGTCGA
GGGAGAGAGGTCGCTTGTTATGAAAAATGAAGGATAAGAATTGTGGATAT
GCGAACGACATCAGGTAATCATTTGAAACGAGTAAAACAAAAAGGAGAAG
GGTCGGCAGCGTCCCAGTGAGCGCACAGAAAATGTTTCTTTTTCTTTTCT
CACGGCATGTGAACAGTTGGAGGACTTTGACGCTACAAGGAAAGGCAGGC
CGGCCCTGCTTTCCGTGACCGTCCCGCCTCATACAGGCTTTCCGAGCTCA
ACCTGGGCATACAGTTCCGACACTCCACGCAAAAGAGAAGAGAGCAAGCT
GAGGGCGTTTGAACCTCGCCCGGAACGCGTCTTGCTCCCCG
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protein sequence of rna4421

>rna4421-protein ID=rna4421-protein|Name=rna4421|organism=Nannochloropsis gaditana|type=polypeptide|length=380bp
MRETSRWRRRSPLTRLFSFKASLWPDCRTTSASKLLPAHSLDLCSIFVLL
AILVSASSHPTSLPPTRRQTPSLSRLPRLFQARSSYTAFQHANHPQYLYT
LRNVRGGAYPSRDDQGYGRGGYPPYDDDYGDDFYDTDSYYPPPPPPPSSS
RNRNRASGRPSSPPTSPRGRPGSSASASSFRSLVNEPVPPSLKRLGFTLL
GASLVLTAMGVSLFFERNLLRLGNLCLIVGLPLYFGPGRVMRLLVAREKL
RASVCFCLGVLLVLRGNSFLGMLLEVFGFFNLFANFFPVVLALLRGLPVV
GDLLKRPERGPGSGGGRGKEYYGQSGRGTYRDSYQGDYGDRWSYDPKHGD
GEQDAFRARFKRPQLALFSFAWSVGTVCPG
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mRNA from alignment at CM002463.1:560390..561578-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4421 ID=rna4421|Name=rna4421|organism=Nannochloropsis gaditana|type=mRNA|length=1189bp|location=Sequence derived from alignment at CM002463.1:560390..561578- (Nannochloropsis gaditana)
ATGAGGGAAACGTCACGCTGGAGGAGGCGGAGCCCTTTAACCCGTTTATT
CTCCTTTAAAGCCTCCCTTTGGCCGGACTGTAGGACAACGTCCGCCTCGA
AGCTGTTGCCGGCCCACTCCCTTGATCTTTGTTCCATTTTTGTCCTGCTC
GCAATCCTCGTTTCCGCTTCATCACACCCAACCTCCCTGCCTCCAACTCG
TCGACAAACCCCGTCCCTTTCCCGCCTGCCGCGACTTTTCCAGGCACGGT
CCTCGTACACGGCCTTCCAGCATGCAAACCACCCACAGTATTTGTACACA
CTTCGAAATGTCCGTGGCGGGGCATACCCTTCCAGGGACGACCAGGGCTA
TGGGAGAGGCGGCTATCCTCCTTACGACGACGACTACGGTGACGATTTTT
ACGACACTGATTCGTACTACCCACCACCCCCACCCCCTCCCTCTTCCTCT
CGGAACCGCAATCGAGCATCAGGGCGCCCATCCTCCCCCCCCACGTCGCC
CAGAGGGAGACCCGGCAGCAGCGCGAGCGCCTCTAGCTTCCGCTCTCTGG
TCAACGAGCCCGTCCCGCCCTCTCTCAAACGTCTGGGCTTCACCCTCTTG
GGCGCCAGCCTGGTCTTGACCGCCATGGGTGTCTCTCTCTTCTTTGAGCG
GAACCTCTTGCGCCTTGGCAACCTGTGCTTGATTGTGGGCTTGCCCCTCT
ACTTCGGCCCTGGCCGGGTCATGCGCTTGCTGGTGGCCAGAGAGAAGCTG
CGGGCATCCGTCTGTTTCTGTCTGGGCGTGCTCCTGGTGCTGCGAGGGAA
CTCCTTCTTGGGGATGCTGCTGGAGGTGTTTGGGTTTTTCAACTTGTTTG
CCAACTTCTTCCCCGTCGTCTTGGCCCTCCTCCGAGGCCTCCCTGTGGTC
GGCGACCTCTTGAAGCGGCCGGAGAGGGGCCCAGGGAGCGGGGGGGGGAG
AGGGAAGGAGTACTACGGGCAGAGCGGGAGAGGGACGTACAGGGATTCGT
ATCAGGGTGACTACGGCGACAGATGGTAAGGGGATAGTAGCTGGTGCTGG
GCGAGGCAAGGATTGGATAAGGAGCTACGACCCAAAGCATGGCGACGGGG
AGCAAGACGCGTTCCGGGCGAGGTTCAAACGCCCTCAGCTTGCTCTCTTC
TCTTTTGCGTGGAGTGTCGGAACTGTATGCCCAGGTTGA
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Coding sequence (CDS) from alignment at CM002463.1:560390..561578-

>rna4421 ID=rna4421|Name=rna4421|organism=Nannochloropsis gaditana|type=CDS|length=2286bp|location=Sequence derived from alignment at CM002463.1:560390..561578- (Nannochloropsis gaditana)
GAGCTACGACCCAAAGCATGGCGACGGGGAGCAAGACGCGTTCCGGGCGA
GGTTCAAACGCCCTCAGCTTGCTCTCTTCTCTTTTGCGTGGAGTGTCGGA
ACTGTATGCCCAGGTTGAATGAGGGAAACGTCACGCTGGAGGAGGCGGAG
CCCTTTAACCCGTTTATTCTCCTTTAAAGCCTCCCTTTGGCCGGACTGTA
GGACAACGTCCGCCTCGAAGCTGTTGCCGGCCCACTCCCTTGATCTTTGT
TCCATTTTTGTCCTGCTCGCAATCCTCGTTTCCGCTTCATCACACCCAAC
CTCCCTGCCTCCAACTCGTCGACAAACCCCGTCCCTTTCCCGCCTGCCGC
GACTTTTCCAGGCACGGTCCTCGTACACGGCCTTCCAGCATGCAAACCAC
CCACAGTATTTGTACACACTTCGAAATGTCCGTGGCGGGGCATACCCTTC
CAGGGACGACCAGGGCTATGGGAGAGGCGGCTATCCTCCTTACGACGACG
ACTACGGTGACGATTTTTACGACACTGATTCGTACTACCCACCACCCCCA
CCCCCTCCCTCTTCCTCTCGGAACCGCAATCGAGCATCAGGGCGCCCATC
CTCCCCCCCCACGTCGCCCAGAGGGAGACCCGGCAGCAGCGCGAGCGCCT
CTAGCTTCCGCTCTCTGGTCAACGAGCCCGTCCCGCCCTCTCTCAAACGT
CTGGGCTTCACCCTCTTGGGCGCCAGCCTGGTCTTGACCGCCATGGGTGT
CTCTCTCTTCTTTGAGCGGAACCTCTTGCGCCTTGGCAACCTGTGCTTGA
TTGTGGGCTTGCCCCTCTACTTCGGCCCTGGCCGGGTCATGCGCTTGCTG
GTGGCCAGAGAGAAGCTGCGGGCATCCGTCTGTTTCTGTCTGGGCGTGCT
CCTGGTGCTGCGAGGGAACTCCTTCTTGGGGATGCTGCTGGAGGTGTTTG
GGTTTTTCAACTTGTTTGCCAACTTCTTCCCCGTCGTCTTGGCCCTCCTC
CGAGGCCTCCCTGTGGTCGGCGACCTCTTGAAGCGGCCGGAGAGGGGCCC
AGGGAGCGGGGGGGGGAGAGGGAAGGAGTACTACGGGCAGAGCGGGAGAG
GGACGTACAGGGATTCGTATCAGGGTGACTACGGCGACAGATGGAGCTAC
GACCCAAAGCATGGCGACGGGGAGCAAGACGCGTTCCGGGCGAGGTTCAA
ACGCCCTCAGCTTGCTCTCTTCTCTTTTGCGTGGAGTGTCGGAACTGTAT
GCCCAGGTTGAATGAGGGAAACGTCACGCTGGAGGAGGCGGAGCCCTTTA
ACCCGTTTATTCTCCTTTAAAGCCTCCCTTTGGCCGGACTGTAGGACAAC
GTCCGCCTCGAAGCTGTTGCCGGCCCACTCCCTTGATCTTTGTTCCATTT
TTGTCCTGCTCGCAATCCTCGTTTCCGCTTCATCACACCCAACCTCCCTG
CCTCCAACTCGTCGACAAACCCCGTCCCTTTCCCGCCTGCCGCGACTTTT
CCAGGCACGGTCCTCGTACACGGCCTTCCAGCATGCAAACCACCCACAGT
ATTTGTACACACTTCGAAATGTCCGTGGCGGGGCATACCCTTCCAGGGAC
GACCAGGGCTATGGGAGAGGCGGCTATCCTCCTTACGACGACGACTACGG
TGACGATTTTTACGACACTGATTCGTACTACCCACCACCCCCACCCCCTC
CCTCTTCCTCTCGGAACCGCAATCGAGCATCAGGGCGCCCATCCTCCCCC
CCCACGTCGCCCAGAGGGAGACCCGGCAGCAGCGCGAGCGCCTCTAGCTT
CCGCTCTCTGGTCAACGAGCCCGTCCCGCCCTCTCTCAAACGTCTGGGCT
TCACCCTCTTGGGCGCCAGCCTGGTCTTGACCGCCATGGGTGTCTCTCTC
TTCTTTGAGCGGAACCTCTTGCGCCTTGGCAACCTGTGCTTGATTGTGGG
CTTGCCCCTCTACTTCGGCCCTGGCCGGGTCATGCGCTTGCTGGTGGCCA
GAGAGAAGCTGCGGGCATCCGTCTGTTTCTGTCTGGGCGTGCTCCTGGTG
CTGCGAGGGAACTCCTTCTTGGGGATGCTGCTGGAGGTGTTTGGGTTTTT
CAACTTGTTTGCCAACTTCTTCCCCGTCGTCTTGGCCCTCCTCCGAGGCC
TCCCTGTGGTCGGCGACCTCTTGAAGCGGCCGGAGAGGGGCCCAGGGAGC
GGGGGGGGGAGAGGGAAGGAGTACTACGGGCAGAGCGGGAGAGGGACGTA
CAGGGATTCGTATCAGGGTGACTACGGCGACAGATG
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Synonyms
Publications