EWM26260.1, cds4411 (CDS) Nannochloropsis gaditana

Overview
NameEWM26260.1
Unique Namecds4411
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:560554..561578 -
Alignment locationCM002463.1:560390..560507 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26260.1
ProductVesicle transport protein, Got1/SFT2
Orig transcript idgnl|cribi|Naga_100145g4.9668.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:560554..561578 -
CM002463.1supercontigCM002463.1:560390..560507 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0016192vesicle-mediated transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR007305Vesicle_transpt_Got1/SFT2
Homology
BLAST of EWM26260.1 vs. NCBI_GenBank
Match: gi|585108260|gb|EWM26260.1| (Vesicle transport protein, Got1/SFT2 [Nannochloropsis gaditana])

HSP 1 Score: 754.592 bits (1947), Expect = 0.000e+0
Identity = 380/380 (100.00%), Postives = 380/380 (100.00%), Query Frame = 0
Query:    1 MRETSRWRRRSPLTRLFSFKASLWPDCRTTSASKLLPAHSLDLCSIFVLLAILVSASSHPTSLPPTRRQTPSLSRLPRLFQARSSYTAFQHANHPQYLYTLRNVRGGAYPSRDDQGYGRGGYPPYDDDYGDDFYDTDSYYPPPPPPPSSSRNRNRASGRPSSPPTSPRGRPGSSASASSFRSLVNEPVPPSLKRLGFTLLGASLVLTAMGVSLFFERNLLRLGNLCLIVGLPLYFGPGRVMRLLVAREKLRASVCFCLGVLLVLRGNSFLGMLLEVFGFFNLFANFFPVVLALLRGLPVVGDLLKRPERGPGSGGGRGKEYYGQSGRGTYRDSYQGDYGDRWSYDPKHGDGEQDAFRARFKRPQLALFSFAWSVGTVCPG 380
            MRETSRWRRRSPLTRLFSFKASLWPDCRTTSASKLLPAHSLDLCSIFVLLAILVSASSHPTSLPPTRRQTPSLSRLPRLFQARSSYTAFQHANHPQYLYTLRNVRGGAYPSRDDQGYGRGGYPPYDDDYGDDFYDTDSYYPPPPPPPSSSRNRNRASGRPSSPPTSPRGRPGSSASASSFRSLVNEPVPPSLKRLGFTLLGASLVLTAMGVSLFFERNLLRLGNLCLIVGLPLYFGPGRVMRLLVAREKLRASVCFCLGVLLVLRGNSFLGMLLEVFGFFNLFANFFPVVLALLRGLPVVGDLLKRPERGPGSGGGRGKEYYGQSGRGTYRDSYQGDYGDRWSYDPKHGDGEQDAFRARFKRPQLALFSFAWSVGTVCPG
Sbjct:    1 MRETSRWRRRSPLTRLFSFKASLWPDCRTTSASKLLPAHSLDLCSIFVLLAILVSASSHPTSLPPTRRQTPSLSRLPRLFQARSSYTAFQHANHPQYLYTLRNVRGGAYPSRDDQGYGRGGYPPYDDDYGDDFYDTDSYYPPPPPPPSSSRNRNRASGRPSSPPTSPRGRPGSSASASSFRSLVNEPVPPSLKRLGFTLLGASLVLTAMGVSLFFERNLLRLGNLCLIVGLPLYFGPGRVMRLLVAREKLRASVCFCLGVLLVLRGNSFLGMLLEVFGFFNLFANFFPVVLALLRGLPVVGDLLKRPERGPGSGGGRGKEYYGQSGRGTYRDSYQGDYGDRWSYDPKHGDGEQDAFRARFKRPQLALFSFAWSVGTVCPG 380          
BLAST of EWM26260.1 vs. NCBI_GenBank
Match: gi|219113952|ref|XP_002176159.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|219129702|ref|XP_002185021.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217402900|gb|EEC42866.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403516|gb|EEC43468.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 119.783 bits (299), Expect = 1.465e-29
Identity = 51/112 (45.54%), Postives = 80/112 (71.43%), Query Frame = 0
Query:  193 KRLGFTLLGASLVLTAMGVSLFFERNLLRLGNLCLIVGLPLYFGPGRVMRLLVAREKLRASVCFCLGVLLVLRGNSFLGMLLEVFGFFNLFANFFPVVLALLRGLPVVGDLL 304
            +++G TLL + +++T +G+SLFF + L+RLGNL  I G+P+  GP R M   +  +K RA+VC  LG+LLV  G+   GM+LE FG  NLF N FP+++A+++ +P+VG+L+
Sbjct:    1 RKVGLTLLASGIMVTMLGISLFFNKTLMRLGNLLFIAGVPVTLGPSRTMGYFLQPQKTRATVCLVLGILLVFFGHPVFGMVLEAFGLLNLFGNMFPLLMAVVKQMPIVGNLM 112          
BLAST of EWM26260.1 vs. NCBI_GenBank
Match: gi|1210528921|dbj|GAX12398.1| (hypothetical protein FisN_2Hh229 [Fistulifera solaris])

HSP 1 Score: 117.857 bits (294), Expect = 4.683e-27
Identity = 64/153 (41.83%), Postives = 86/153 (56.21%), Query Frame = 0
Query:  193 KRLGFTLLGASLVLTAMGVSLFFERNLLRLGNLCLIVGLPLYFGPGRVMRLLVAREKLRASVCFCLGVLLVLRGNSFLGMLLEVFGFFNLFANFFPVVLALLRGLPVVGDLLKRPERGPGSGGGRGKEYYGQSGRGTYRDSYQGD----YGDR 341
            +R+GF LLG+  ++T +G+SLFF + L+RLGNL  I G+P+  GP R +   V  EK RA+ C  LG+ LV  G    G++LE FG  NLF N FP V A+ + +P +G LL        SGG   K    +    +Y D Y  D    YGDR
Sbjct:  121 RRIGFGLLGSGSIITMLGISLFFNKTLMRLGNLLFIAGVPMTLGPSRTLGYFVKPEKFRATGCLALGIFLVFIGMPVFGIILEAFGILNLFGNLFPFVWAVAKNMPGIGPLL--------SGGNNRKRREPKRDEYSYEDDYGRDEDPYYGDR 265          
BLAST of EWM26260.1 vs. NCBI_GenBank
Match: gi|1072238048|gb|OEU22775.1| (Got1-like protein, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 111.309 bits (277), Expect = 2.331e-26
Identity = 53/112 (47.32%), Postives = 73/112 (65.18%), Query Frame = 0
Query:  193 KRLGFTLLGASLVLTAMGVSLFFERNLLRLGNLCLIVGLPLYFGPGRVMRLLVAREKLRASVCFCLGVLLVLRGNSFLGMLLEVFGFFNLFANFFPVVLALLRGLPVVGDLL 304
            +++G  LLG    LT +GVSLFF + L+RLGNL  + G+P+  GPGR        +K RA+ C  LG++LV  G   LG+LLEVFGF NLF N FP+  A+++ +P +G LL
Sbjct:    1 RKIGLPLLGIGAALTLLGVSLFFNKMLMRLGNLFFVAGVPMTIGPGRTAGYFFQPKKARATACLSLGIILVFAGRPILGILLEVFGFINLFGNMFPLAFAIMKQMPFIGPLL 112          
BLAST of EWM26260.1 vs. NCBI_GenBank
Match: gi|397646985|gb|EJK77507.1| (hypothetical protein THAOC_00660 [Thalassiosira oceanica])

HSP 1 Score: 117.857 bits (294), Expect = 2.345e-26
Identity = 54/113 (47.79%), Postives = 75/113 (66.37%), Query Frame = 0
Query:  188 VPPSLKRLGFTLLGASLVLTAMGVSLFFERNLLRLGNLCLIVGLPLYFGPGRVMRLLVAREKLRASVCFCLGVLLVLRGNSFLGMLLEVFGFFNLFANFFPVVLALLRGLPVV 300
            +  S K++G  LL A    TA+G++LFF + L+RLGNL  + G+PL  GPGR M   +  +K RA+ C   G+LLVL G+  +G+LLEVFG  NLF N FP+V+ + + LPVV
Sbjct:  188 LTASNKKVGIILLSAGAAFTALGITLFFNKTLMRLGNLLFVAGVPLMIGPGRTMGYFLQPKKARATGCLACGILLVLVGHPVIGILLEVFGLLNLFGNMFPLVMMMAKNLPVV 300          
BLAST of EWM26260.1 vs. NCBI_GenBank
Match: gi|224003021|ref|XP_002291182.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220972958|gb|EED91289.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 110.923 bits (276), Expect = 3.081e-26
Identity = 52/114 (45.61%), Postives = 74/114 (64.91%), Query Frame = 0
Query:  191 SLKRLGFTLLGASLVLTAMGVSLFFERNLLRLGNLCLIVGLPLYFGPGRVMRLLVAREKLRASVCFCLGVLLVLRGNSFLGMLLEVFGFFNLFANFFPVVLALLRGLPVVGDLL 304
            S ++LG   L +    TA+G++LFF + L+RLGNL  + G+PL  GPGR +   +  +K RA+ C   G+ LVL G+  +G+LLEVFG  NLF N FP+V+ + + LPVVG L 
Sbjct:    4 SNRKLGIIFLSSGAAFTALGITLFFNKTLMRLGNLLFVCGIPLMLGPGRTVGYFLQPKKARATGCLGCGIFLVLVGHPVIGILLEVFGLLNLFGNMFPLVMMMAKNLPVVGGLF 117          
BLAST of EWM26260.1 vs. NCBI_GenBank
Match: gi|676394217|ref|XP_009040386.1| (hypothetical protein AURANDRAFT_8288, partial [Aureococcus anophagefferens] >gi|323448936|gb|EGB04828.1| hypothetical protein AURANDRAFT_8288, partial [Aureococcus anophagefferens])

HSP 1 Score: 108.227 bits (269), Expect = 2.444e-25
Identity = 49/108 (45.37%), Postives = 71/108 (65.74%), Query Frame = 0
Query:  193 KRLGFTLLGASLVLTAMGVSLFFERNLLRLGNLCLIVGLPLYFGPGRVMRLLVAREKLRASVCFCLGVLLVLRGNSFLGMLLEVFGFFNLFANFFPVVLALLRGLPVV 300
            ++ G  +  A    T +GVSLFFE+NL+RLGN+ L+ G P+  GP R  R ++   KLR S+CF  G +L+L G+  LG+++E+FGF NLF N FP+  A+ + LP V
Sbjct:    1 RKTGLIMCAAGAASTMLGVSLFFEKNLIRLGNVLLVAGAPIVVGPQRASRYVLNPAKLRGSLCFACGFMLILSGHPLLGIVVEIFGFLNLFGNLFPLFTAMFKNLPFV 108          
BLAST of EWM26260.1 vs. NCBI_GenBank
Match: gi|1210516137|dbj|GAX24953.1| (hypothetical protein FisN_2Lh229 [Fistulifera solaris])

HSP 1 Score: 112.849 bits (281), Expect = 3.748e-25
Identity = 62/152 (40.79%), Postives = 85/152 (55.92%), Query Frame = 0
Query:  193 KRLGFTLLGASLVLTAMGVSLFFERNLLRLGNLCLIVGLPLYFGPGRVMRLLVAREKLRASVCFCLGVLLVLRGNSFLGMLLEVFGFFNLFANFFPVVLALLRGLPVVGDLLKRPERGPGSGGGRGKEYYGQSGRGTYRDSYQGD----YGD 340
            +R+GF LLG+  ++T +G+SLFF + L+RLGNL  I G+P+  GP R +   V  EK RA+ C  LG+ LV  G    G++LE FG  NLF N FP V A+ + +P +G LL        SGG   +    +    +Y D Y  D    YGD
Sbjct:  123 RRIGFGLLGSGSIITMLGISLFFNKTLMRLGNLLFIAGVPMTLGPSRTLGYFVKPEKFRATGCLALGIFLVFIGMPVFGIILEAFGILNLFGNLFPFVWAVAKNMPGIGPLL--------SGGNNRRRREPRRDDYSYEDDYGRDEHPYYGD 266          
BLAST of EWM26260.1 vs. NCBI_GenBank
Match: gi|298708662|emb|CBJ26149.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 108.997 bits (271), Expect = 6.557e-23
Identity = 49/112 (43.75%), Postives = 70/112 (62.50%), Query Frame = 0
Query:  193 KRLGFTLLGASLVLTAMGVSLFFERNLLRLGNLCLIVGLPLYFGPGRVMRLLVAREKLRASVCFCLGVLLVLRGNSFLGMLLEVFGFFNLFANFFPVVLALLRGLPVVGDLL 304
            K+ G   L  S++LT MGVSL FE+NL+RLGNL  + G+ L+ GP  V+R      KLR SV F +G   V  G+  +G+ +EVFGF NLF N  P+V A+   +P + +++
Sbjct:  219 KKYGIYALAGSVLLTMMGVSLMFEKNLIRLGNLGFVAGMSLFIGPSNVVRYFTQASKLRGSVIFAVGFFFVFTGHPIIGLAIEVFGFLNLFGNMLPMVWAMASNMPFIKEIM 330          
BLAST of EWM26260.1 vs. NCBI_GenBank
Match: gi|924115501|emb|CUA76355.1| (Vesicle transport protein GOT1B [Rhizoctonia solani])

HSP 1 Score: 99.7525 bits (247), Expect = 4.785e-22
Identity = 45/99 (45.45%), Postives = 63/99 (63.64%), Query Frame = 0
Query:  209 MGVSLFFERNLLRLGNLCLIVGLPLYFGPGRVMRLLVAREKLRASVCFCLGVLLVLRGNSFLGMLLEVFGFFNLFANFFPVVLALLRGLPVVGDLLKRP 307
            +GV LFF+  LL LGN+  + GL L  GP +       ++KLR ++CF  G+LLV     F+GM++E FGF NLF +FFPV+++ LR LP +G  L  P
Sbjct:    3 LGVMLFFDGGLLALGNILFVSGLTLIIGPTKTFYFFARKQKLRGTICFVTGILLVFFKWPFVGMIIETFGFLNLFGDFFPVIVSFLRQLPFIGTFLSLP 101          
The following BLAST results are available for this feature:
BLAST of EWM26260.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108260|gb|EWM26260.1|0.000e+0100.00Vesicle transport protein, Got1/SFT2 [Nannochlorop... [more]
gi|219113952|ref|XP_002176159.1|1.465e-2945.54predicted protein, partial [Phaeodactylum tricornu... [more]
gi|1210528921|dbj|GAX12398.1|4.683e-2741.83hypothetical protein FisN_2Hh229 [Fistulifera sola... [more]
gi|1072238048|gb|OEU22775.1|2.331e-2647.32Got1-like protein, partial [Fragilariopsis cylindr... [more]
gi|397646985|gb|EJK77507.1|2.345e-2647.79hypothetical protein THAOC_00660 [Thalassiosira oc... [more]
gi|224003021|ref|XP_002291182.1|3.081e-2645.61predicted protein, partial [Thalassiosira pseudona... [more]
gi|676394217|ref|XP_009040386.1|2.444e-2545.37hypothetical protein AURANDRAFT_8288, partial [Aur... [more]
gi|1210516137|dbj|GAX24953.1|3.748e-2540.79hypothetical protein FisN_2Lh229 [Fistulifera sola... [more]
gi|298708662|emb|CBJ26149.1|6.557e-2343.75conserved unknown protein [Ectocarpus siliculosus][more]
gi|924115501|emb|CUA76355.1|4.785e-2245.45Vesicle transport protein GOT1B [Rhizoctonia solan... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4421rna4421Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications