EWM26260.1, cds4411 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26260.1 vs. NCBI_GenBank
Match: gi|585108260|gb|EWM26260.1| (Vesicle transport protein, Got1/SFT2 [Nannochloropsis gaditana]) HSP 1 Score: 754.592 bits (1947), Expect = 0.000e+0 Identity = 380/380 (100.00%), Postives = 380/380 (100.00%), Query Frame = 0
Query: 1 MRETSRWRRRSPLTRLFSFKASLWPDCRTTSASKLLPAHSLDLCSIFVLLAILVSASSHPTSLPPTRRQTPSLSRLPRLFQARSSYTAFQHANHPQYLYTLRNVRGGAYPSRDDQGYGRGGYPPYDDDYGDDFYDTDSYYPPPPPPPSSSRNRNRASGRPSSPPTSPRGRPGSSASASSFRSLVNEPVPPSLKRLGFTLLGASLVLTAMGVSLFFERNLLRLGNLCLIVGLPLYFGPGRVMRLLVAREKLRASVCFCLGVLLVLRGNSFLGMLLEVFGFFNLFANFFPVVLALLRGLPVVGDLLKRPERGPGSGGGRGKEYYGQSGRGTYRDSYQGDYGDRWSYDPKHGDGEQDAFRARFKRPQLALFSFAWSVGTVCPG 380
MRETSRWRRRSPLTRLFSFKASLWPDCRTTSASKLLPAHSLDLCSIFVLLAILVSASSHPTSLPPTRRQTPSLSRLPRLFQARSSYTAFQHANHPQYLYTLRNVRGGAYPSRDDQGYGRGGYPPYDDDYGDDFYDTDSYYPPPPPPPSSSRNRNRASGRPSSPPTSPRGRPGSSASASSFRSLVNEPVPPSLKRLGFTLLGASLVLTAMGVSLFFERNLLRLGNLCLIVGLPLYFGPGRVMRLLVAREKLRASVCFCLGVLLVLRGNSFLGMLLEVFGFFNLFANFFPVVLALLRGLPVVGDLLKRPERGPGSGGGRGKEYYGQSGRGTYRDSYQGDYGDRWSYDPKHGDGEQDAFRARFKRPQLALFSFAWSVGTVCPG
Sbjct: 1 MRETSRWRRRSPLTRLFSFKASLWPDCRTTSASKLLPAHSLDLCSIFVLLAILVSASSHPTSLPPTRRQTPSLSRLPRLFQARSSYTAFQHANHPQYLYTLRNVRGGAYPSRDDQGYGRGGYPPYDDDYGDDFYDTDSYYPPPPPPPSSSRNRNRASGRPSSPPTSPRGRPGSSASASSFRSLVNEPVPPSLKRLGFTLLGASLVLTAMGVSLFFERNLLRLGNLCLIVGLPLYFGPGRVMRLLVAREKLRASVCFCLGVLLVLRGNSFLGMLLEVFGFFNLFANFFPVVLALLRGLPVVGDLLKRPERGPGSGGGRGKEYYGQSGRGTYRDSYQGDYGDRWSYDPKHGDGEQDAFRARFKRPQLALFSFAWSVGTVCPG 380
BLAST of EWM26260.1 vs. NCBI_GenBank
Match: gi|219113952|ref|XP_002176159.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|219129702|ref|XP_002185021.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217402900|gb|EEC42866.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403516|gb|EEC43468.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 119.783 bits (299), Expect = 1.465e-29 Identity = 51/112 (45.54%), Postives = 80/112 (71.43%), Query Frame = 0
Query: 193 KRLGFTLLGASLVLTAMGVSLFFERNLLRLGNLCLIVGLPLYFGPGRVMRLLVAREKLRASVCFCLGVLLVLRGNSFLGMLLEVFGFFNLFANFFPVVLALLRGLPVVGDLL 304
+++G TLL + +++T +G+SLFF + L+RLGNL I G+P+ GP R M + +K RA+VC LG+LLV G+ GM+LE FG NLF N FP+++A+++ +P+VG+L+
Sbjct: 1 RKVGLTLLASGIMVTMLGISLFFNKTLMRLGNLLFIAGVPVTLGPSRTMGYFLQPQKTRATVCLVLGILLVFFGHPVFGMVLEAFGLLNLFGNMFPLLMAVVKQMPIVGNLM 112
BLAST of EWM26260.1 vs. NCBI_GenBank
Match: gi|1210528921|dbj|GAX12398.1| (hypothetical protein FisN_2Hh229 [Fistulifera solaris]) HSP 1 Score: 117.857 bits (294), Expect = 4.683e-27 Identity = 64/153 (41.83%), Postives = 86/153 (56.21%), Query Frame = 0
Query: 193 KRLGFTLLGASLVLTAMGVSLFFERNLLRLGNLCLIVGLPLYFGPGRVMRLLVAREKLRASVCFCLGVLLVLRGNSFLGMLLEVFGFFNLFANFFPVVLALLRGLPVVGDLLKRPERGPGSGGGRGKEYYGQSGRGTYRDSYQGD----YGDR 341
+R+GF LLG+ ++T +G+SLFF + L+RLGNL I G+P+ GP R + V EK RA+ C LG+ LV G G++LE FG NLF N FP V A+ + +P +G LL SGG K + +Y D Y D YGDR
Sbjct: 121 RRIGFGLLGSGSIITMLGISLFFNKTLMRLGNLLFIAGVPMTLGPSRTLGYFVKPEKFRATGCLALGIFLVFIGMPVFGIILEAFGILNLFGNLFPFVWAVAKNMPGIGPLL--------SGGNNRKRREPKRDEYSYEDDYGRDEDPYYGDR 265
BLAST of EWM26260.1 vs. NCBI_GenBank
Match: gi|1072238048|gb|OEU22775.1| (Got1-like protein, partial [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 111.309 bits (277), Expect = 2.331e-26 Identity = 53/112 (47.32%), Postives = 73/112 (65.18%), Query Frame = 0
Query: 193 KRLGFTLLGASLVLTAMGVSLFFERNLLRLGNLCLIVGLPLYFGPGRVMRLLVAREKLRASVCFCLGVLLVLRGNSFLGMLLEVFGFFNLFANFFPVVLALLRGLPVVGDLL 304
+++G LLG LT +GVSLFF + L+RLGNL + G+P+ GPGR +K RA+ C LG++LV G LG+LLEVFGF NLF N FP+ A+++ +P +G LL
Sbjct: 1 RKIGLPLLGIGAALTLLGVSLFFNKMLMRLGNLFFVAGVPMTIGPGRTAGYFFQPKKARATACLSLGIILVFAGRPILGILLEVFGFINLFGNMFPLAFAIMKQMPFIGPLL 112
BLAST of EWM26260.1 vs. NCBI_GenBank
Match: gi|397646985|gb|EJK77507.1| (hypothetical protein THAOC_00660 [Thalassiosira oceanica]) HSP 1 Score: 117.857 bits (294), Expect = 2.345e-26 Identity = 54/113 (47.79%), Postives = 75/113 (66.37%), Query Frame = 0
Query: 188 VPPSLKRLGFTLLGASLVLTAMGVSLFFERNLLRLGNLCLIVGLPLYFGPGRVMRLLVAREKLRASVCFCLGVLLVLRGNSFLGMLLEVFGFFNLFANFFPVVLALLRGLPVV 300
+ S K++G LL A TA+G++LFF + L+RLGNL + G+PL GPGR M + +K RA+ C G+LLVL G+ +G+LLEVFG NLF N FP+V+ + + LPVV
Sbjct: 188 LTASNKKVGIILLSAGAAFTALGITLFFNKTLMRLGNLLFVAGVPLMIGPGRTMGYFLQPKKARATGCLACGILLVLVGHPVIGILLEVFGLLNLFGNMFPLVMMMAKNLPVV 300
BLAST of EWM26260.1 vs. NCBI_GenBank
Match: gi|224003021|ref|XP_002291182.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220972958|gb|EED91289.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 110.923 bits (276), Expect = 3.081e-26 Identity = 52/114 (45.61%), Postives = 74/114 (64.91%), Query Frame = 0
Query: 191 SLKRLGFTLLGASLVLTAMGVSLFFERNLLRLGNLCLIVGLPLYFGPGRVMRLLVAREKLRASVCFCLGVLLVLRGNSFLGMLLEVFGFFNLFANFFPVVLALLRGLPVVGDLL 304
S ++LG L + TA+G++LFF + L+RLGNL + G+PL GPGR + + +K RA+ C G+ LVL G+ +G+LLEVFG NLF N FP+V+ + + LPVVG L
Sbjct: 4 SNRKLGIIFLSSGAAFTALGITLFFNKTLMRLGNLLFVCGIPLMLGPGRTVGYFLQPKKARATGCLGCGIFLVLVGHPVIGILLEVFGLLNLFGNMFPLVMMMAKNLPVVGGLF 117
BLAST of EWM26260.1 vs. NCBI_GenBank
Match: gi|676394217|ref|XP_009040386.1| (hypothetical protein AURANDRAFT_8288, partial [Aureococcus anophagefferens] >gi|323448936|gb|EGB04828.1| hypothetical protein AURANDRAFT_8288, partial [Aureococcus anophagefferens]) HSP 1 Score: 108.227 bits (269), Expect = 2.444e-25 Identity = 49/108 (45.37%), Postives = 71/108 (65.74%), Query Frame = 0
Query: 193 KRLGFTLLGASLVLTAMGVSLFFERNLLRLGNLCLIVGLPLYFGPGRVMRLLVAREKLRASVCFCLGVLLVLRGNSFLGMLLEVFGFFNLFANFFPVVLALLRGLPVV 300
++ G + A T +GVSLFFE+NL+RLGN+ L+ G P+ GP R R ++ KLR S+CF G +L+L G+ LG+++E+FGF NLF N FP+ A+ + LP V
Sbjct: 1 RKTGLIMCAAGAASTMLGVSLFFEKNLIRLGNVLLVAGAPIVVGPQRASRYVLNPAKLRGSLCFACGFMLILSGHPLLGIVVEIFGFLNLFGNLFPLFTAMFKNLPFV 108
BLAST of EWM26260.1 vs. NCBI_GenBank
Match: gi|1210516137|dbj|GAX24953.1| (hypothetical protein FisN_2Lh229 [Fistulifera solaris]) HSP 1 Score: 112.849 bits (281), Expect = 3.748e-25 Identity = 62/152 (40.79%), Postives = 85/152 (55.92%), Query Frame = 0
Query: 193 KRLGFTLLGASLVLTAMGVSLFFERNLLRLGNLCLIVGLPLYFGPGRVMRLLVAREKLRASVCFCLGVLLVLRGNSFLGMLLEVFGFFNLFANFFPVVLALLRGLPVVGDLLKRPERGPGSGGGRGKEYYGQSGRGTYRDSYQGD----YGD 340
+R+GF LLG+ ++T +G+SLFF + L+RLGNL I G+P+ GP R + V EK RA+ C LG+ LV G G++LE FG NLF N FP V A+ + +P +G LL SGG + + +Y D Y D YGD
Sbjct: 123 RRIGFGLLGSGSIITMLGISLFFNKTLMRLGNLLFIAGVPMTLGPSRTLGYFVKPEKFRATGCLALGIFLVFIGMPVFGIILEAFGILNLFGNLFPFVWAVAKNMPGIGPLL--------SGGNNRRRREPRRDDYSYEDDYGRDEHPYYGD 266
BLAST of EWM26260.1 vs. NCBI_GenBank
Match: gi|298708662|emb|CBJ26149.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 108.997 bits (271), Expect = 6.557e-23 Identity = 49/112 (43.75%), Postives = 70/112 (62.50%), Query Frame = 0
Query: 193 KRLGFTLLGASLVLTAMGVSLFFERNLLRLGNLCLIVGLPLYFGPGRVMRLLVAREKLRASVCFCLGVLLVLRGNSFLGMLLEVFGFFNLFANFFPVVLALLRGLPVVGDLL 304
K+ G L S++LT MGVSL FE+NL+RLGNL + G+ L+ GP V+R KLR SV F +G V G+ +G+ +EVFGF NLF N P+V A+ +P + +++
Sbjct: 219 KKYGIYALAGSVLLTMMGVSLMFEKNLIRLGNLGFVAGMSLFIGPSNVVRYFTQASKLRGSVIFAVGFFFVFTGHPIIGLAIEVFGFLNLFGNMLPMVWAMASNMPFIKEIM 330
BLAST of EWM26260.1 vs. NCBI_GenBank
Match: gi|924115501|emb|CUA76355.1| (Vesicle transport protein GOT1B [Rhizoctonia solani]) HSP 1 Score: 99.7525 bits (247), Expect = 4.785e-22 Identity = 45/99 (45.45%), Postives = 63/99 (63.64%), Query Frame = 0
Query: 209 MGVSLFFERNLLRLGNLCLIVGLPLYFGPGRVMRLLVAREKLRASVCFCLGVLLVLRGNSFLGMLLEVFGFFNLFANFFPVVLALLRGLPVVGDLLKRP 307
+GV LFF+ LL LGN+ + GL L GP + ++KLR ++CF G+LLV F+GM++E FGF NLF +FFPV+++ LR LP +G L P
Sbjct: 3 LGVMLFFDGGLLALGNILFVSGLTLIIGPTKTFYFFARKQKLRGTICFVTGILLVFFKWPFVGMIIETFGFLNLFGDFFPVIVSFLRQLPFIGTFLSLP 101 The following BLAST results are available for this feature:
BLAST of EWM26260.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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