rna4420, rna4420 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4420
Unique Name	rna4420
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2087
Alignment location	CM002463.1:558161..560483 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100145g6.9678.mrna
Orig protein id	gnl\|cribi\|Naga_100145g6.9678
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:558161..560483 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100145g6	gene4263	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4420	rna4420-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26270.1	cds4410	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:558161..560483+
coding sequence from alignment at CM002463.1:558161..560483+

mRNA sequence

>rna4420 ID=rna4420|Name=rna4420|organism=Nannochloropsis gaditana|type=mRNA|length=2087bp
AGCGGGATCGGGTGCACGCTACAGGGCAGTACATCAGAAAAGCAAGGGGG
GCATAGCAAACTTGAGACGTCTTTTTCCATCGCCGGTCTGACTCACACAA
AAGTAGTCGCTCGTGGTTTTAAGTTATACATGGCGCCATTACGCCTGCAC
GTCGGACTGCCGGAGCATTCACGTGCTTTAGCGGCGCGAGGATCCTCTCG
CACGGGCGAGAGCATGCATCTGCTTCAAGGTGTCAAGCCGACGGCGCCGT
CTGCGGCCTCGCGTGTCAATAATGAAAGAAAAGCTCCACATCCTGCATCA
TGAAGCGAGAGGAATGCATGTGTGTCATTGCTTCATCTTTTTTCGAAGGT
CGTGTTGAACACTGTGGGCTAGGCTAAGCACTTTGACCTCTCAGAGGCAA
CCTCCCACCCGATCCCTTCCCCCCCCAACTATTCTGTAGTGAGATCCTGG
GGTAGCCCTTTTCACATTGATCACGTGATTTTGGATAAATAACCACGCAC
TTTTGGGTAAATATAAATAGGTTTTGGTCGTTCATTCTTGATCTGCTGGC
ATCGTGTGCCAATCACGACTTCCTATAGGAGTCGGAAATGCACTTGAATT
TCTTGAGCTTGAGAACCGAAGCAGAACATCAACTTGGCCTGCAAGACTTT
CACATGTGTTTTCCTTTTTAGATGAATTGAATTAAGACGTGGGAAAACCC
ACAGTTACGACAAAAGATTTGTTGAGACTGGAGGTGTGTCTTCCCTCGAG
GATTTTCACACATTAACAACTTTTATTTTCTTCATCCCTCAACTTCAAGT
AGAAGCCAACTAGCACGCGCCCAGCAAGGGAAAAGCTCTGAAAAGAGGAA
ATCAAGAAGAAAACGAAAAAATATGCAGGGTAAAGACTTCAAAATTATGC
GTCGTAACAGTCTCACCGCTGAAGTGGACGGAGTGTGGCCCAATTTGGAG
GAAGAGGAAGACTCTTACGTCCCCCATAAGGTGCATATGAAAGAATGTAT
GATGCTCCGCCGTGTGCTCGGGGCAGACAAAGCGGATTCCCTCCCTCGGG
CGTGCAAACTCAATGCGACCTCGCAGGCCAACCAAGGTTTCCTGACCCGA
CTCTCACACTTTAACGAGAGTTCCGACGTAGCCGGGGTGGTCAATATCAA
GGAATGCCACAAACTGCAAGACAGCCTGCGCATGGTGGCCGGGGGAGTGA
CGTTTTTGCCCGCATCGTGTAACGCCATGCTGGCGAAGGAGGAGGAGACG
CTCAAAGACAAGTTTGAGACGGAGAACGCCAAGGTCTACGCGCGACTGAA
GCGTCGCAACAGCTGGGTGGGTAAGGAGGATTTCCCACCCACTGCCACGT
AAAGCCATGTGGGTGTGGGGAAGGGACATAAGGAAATGAAAGGCGAGAAG
GAGAGGGTGTCAGCGTGATGGTCGATTGGGATGTGTGCCTGGGGGCGAGT
CAGGAGGAAGCAGGCGGGTGGAGGGATACGCGACTGTCACGAAGGAATTG
CATAGATAGTGCTTGCCAAGGGAGAGGATGTGTGCCCTGGAGATCCGCTC
TGCTTTCTGGGCGAGACCCATCACCCACTGCCCCGGGCCGTAGGACAAAG
GACTAAGGGGCGCGGTCATTGGAGAATCGTGCGTGAAGATAGGCTATCGC
AAAGGCCGTAAGAGAGGAGGAGGCTTAAAGAAAGAATGGACAGGCTTGCA
GGGCGAGAAGGGCTTGAGATTGCAGTTTTACAAAATGGCTGGTCGAGGGA
GAGAGGTCGCTTGTTATGAAAAATGAAGGATAAGAATTGTGGATATGCGA
ACGACATCAGGTAATCATTTGAAACGAGTAAAACAAAAAGGAGAAGGGTC
GGCAGCGTCCCAGTGAGCGCACAGAAAATGTTTCTTTTTCTTTTCTCACG
GCATGTGAACAGTTGGAGGACTTTGACGCTACAAGGAAAGGCAGGCCGGC
CCTGCTTTCCGTGACCGTCCCGCCTCATACAGGCTTTCCGAGCTCAACCT
GGGCATACAGTTCCGACACTCCACGCAAAAGAGAAGAGAGCAAGCTGAGG
GCGTTTGAACCTCGCCCGGAACGCGTCTTGCTCCCCG

protein sequence of rna4420

>rna4420-protein ID=rna4420-protein|Name=rna4420|organism=Nannochloropsis gaditana|type=polypeptide|length=159bp
MQGKDFKIMRRNSLTAEVDGVWPNLEEEEDSYVPHKVHMKECMMLRRVLG
ADKADSLPRACKLNATSQANQGFLTRLSHFNESSDVAGVVNIKECHKLQD
SLRMVAGGVTFLPASCNAMLAKEEETLKDKFETENAKVYARLKRRNSWVG
KEDFPPTAT

mRNA from alignment at CM002463.1:558161..560483+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4420 ID=rna4420|Name=rna4420|organism=Nannochloropsis gaditana|type=mRNA|length=2323bp|location=Sequence derived from alignment at CM002463.1:558161..560483+ (Nannochloropsis gaditana)
AGCGGGATCGGGTGCACGCTACAGGGCAGTACATCAGAAAAGCAAGGGGG
GCATAGCAAACTTGAGACGTCTTTTTCCATCGCCGGTCTGACTCACACAA
AAGTAGTCGCTCGTGGTTTTAAGTTATACATGGCGCCATTACGCCTGCAC
GTCGGACTGCCGGAGCATTCACGTGCTTTAGCGGCGCGAGGATCCTCTCG
CACGGGCGAGAGCATGCATCTGCTTCAAGGTGTCAAGCCGACGGCGCCGT
CTGCGGCCTCGCGTGTCAATAATGAAAGAAAAGCTCCACATCCTGCATCA
TGAAGCGAGAGGAATGCATGTGTGTCATTGCTTCATCTTTTTTCGAAGGT
CGTGTTGAACACTGTGGGCTAGGCTAAGCACTTTGACCTCTCAGAGGCAA
CCTCCCACCcgatcccttccccccccaactATTCTGTAGTGAGATCCTGG
GGTAGCCCTTTTCACATTGATCACGTGATTTTGGATAAATAACCACGCAC
TTTTGGGTAAATATAAATAGGTTTTGGTCGTTCATTCTTGATCTGCTGGC
ATCGTGTGCCAATCACGACTTCCTATAGGAGTCGGAAATGCACTTGAATT
TCTTGAGCTTGAGAACCGAAGCAGAACATCAACTTGGCCTGCAAGACTTT
CACATGTGTTTTCCTTTTTAGATGAATTGAATTAAGACGTGGGAAAACCC
ACAGTTACGACAAAAGATTTGTTGAGACTGGAGGTGTGTCTTCCCTCGAG
GATTTTCACACATTAACAACTTTTattttcttcatccctcAACTTCAAGT
AGAAGCCAACTAGCACGCGCCCAGCAAGGGAAAAGCTCTGAAAAGAGGAA
ATCAAGAAGAAAACGAAAAAATATGCAGGGTAAAGACTTCAAAATTATGC
GTCGTAACAGTCTCACCGCTGAAGTGGACGGAGTGTGGCCCaatttggag
gaagaggaagactcTTACGTCCCCCATAAGGTGCATATGAAAGGTGCGTC
TAGCGGGCAGCCAACACTAGGCATGATCCAGGGCGAAAGATTAACCAAGA
CAGGATGCATGGGTTTGTAGTGGGATTACGCGCTTATTCCTGAGAAAAAG
ATGGACTTGATCCCTTCCTTACAGTTTCGTGTCAGAAAATGTTGTCTACC
TTAGGTTTCCTCTGTGCCTTTCACATGTCCTAACACCCCACCTGTCTTCA
TTGGAATACCTTAATTTCCTACGATCCAGAATGTATGATGCTCCGCCGTG
TGCTCGGGGCAGACAAAGcggattccctccctcgggcgtGCAAACTCAAT
GCGACCTCGCAGGCCAACCAAGGTTTCCTGACCCGACTCTCACACTTTAA
CGAGAGTTCCGACGTAGCCGGGGTGGTCAATATCAAGGAATGCCACAAAC
TGCAAGACAGCCTGCGCATGGTGGCCGGGGGAGTGACGTTTTTGCCCGCA
TCGTGTAACGCCATgctggcgaaggaggaggagacgctcAAAGACAAGTT
TGAGACGGAGAACGCCAAGGTCTACGCGCGACTGAAGCGTCGCAACAGCT
GGGTGGGTAAGGAGGATTTCCCACCCACTGCCACGTAAAGCCATGTGGGT
GTGGGGAAGGGACATAAGGAAATgaaaggcgagaaggagagggtgtcAGC
GTGATGGTCGATTGGGATGTGTGCCTGGGGGCGAgtcaggaggaagcagg
cgggTGGAGGGATACGCGACTGTCACGAAGGAATTGCATAGATAGTGCTT
gccaagggagaggatgtgTGCCCTGGAGATCCGCTCTGCTTTCTGGGCGA
GACCCATCACCCACTGCCCCGGGCCGTAGGACAAAGGACTAAGGGGCGCG
GTCATTGGAGAATCGTGCGTGAAGATAGGCTATCGCAAAGGCCgtaagag
aggaggaggcttaaAGAAAGAATGGACAGGCTTgcagggcgagaagggcT
TGAGATTGCAGTTTTACAAAATGGCtggtcgagggagagaggtcgcTTGT
TATGAAAAATGAAGGATAAGAATTGTGGATATGCGAACGACATCAGGTAA
TCATTTGAAACGAGTAAaacaaaaaggagaagggtcGGCAGCGTCCCAGT
GAGCGCACAGAAAatgtttctttttcttttctcacgGCATGTGAACAGTT
GGAGGACTTTGACGCTACAAGGAAAGGCAGGCCGGCCCTGCTTTCCGTGA
CCGTCCCGCCTCATACAGGCTTTCCGAGCTCAACCTGGGCATACAGTTCC
GACACTCCACGCAAAAGAGAAGAGAGCAAGCTGAGGGCGTTTGAACCTCG
CCCGGAACGCGTCTTGCTCCCCG

Coding sequence (CDS) from alignment at CM002463.1:558161..560483+

>rna4420 ID=rna4420|Name=rna4420|organism=Nannochloropsis gaditana|type=CDS|length=960bp|location=Sequence derived from alignment at CM002463.1:558161..560483+ (Nannochloropsis gaditana)
ATGCAGGGTAAAGACTTCAAAATTATGCGTCGTAACAGTCTCACCGCTGA
AGTGGACGGAGTGTGGCCCaatttggaggaagaggaagactcTTACGTCC
CCCATAAGGTGCATATGAAAGAATGTATGATGCTCCGCCGTGTGCTCGGG
GCAGACAAAGcggattccctccctcgggcgtGCAAACTCAATGCGACCTC
GCAGGCCAACCAAGGTTTCCTGACCCGACTCTCACACTTTAACGAGAGTT
CCGACGTAGCCGGGGTGGTCAATATCAAGGAATGCCACAAACTGCAAGAC
AGCCTGCGCATGGTGGCCGGGGGAGTGACGTTTTTGCCCGCATCGTGTAA
CGCCATgctggcgaaggaggaggagacgctcAAAGACAAGTTTGAGACGG
AGAACGCCAAGGTCTACGCGCGACTGAAGCGTCGCAACAGCTGGGTGGGT
AAGGAGGATTTCCCACCCACTGCCACGTAAATGCAGGGTAAAGACTTCAA
AATTATGCGTCGTAACAGTCTCACCGCTGAAGTGGACGGAGTGTGGCCCa
atttggaggaagaggaagactcTTACGTCCCCCATAAGGTGCATATGAAA
GAATGTATGATGCTCCGCCGTGTGCTCGGGGCAGACAAAGcggattccct
ccctcgggcgtGCAAACTCAATGCGACCTCGCAGGCCAACCAAGGTTTCC
TGACCCGACTCTCACACTTTAACGAGAGTTCCGACGTAGCCGGGGTGGTC
AATATCAAGGAATGCCACAAACTGCAAGACAGCCTGCGCATGGTGGCCGG
GGGAGTGACGTTTTTGCCCGCATCGTGTAACGCCATgctggcgaaggagg
aggagacgctcAAAGACAAGTTTGAGACGGAGAACGCCAAGGTCTACGCG
CGACTGAAGCGTCGCAACAGCTGGGTGGGTAAGGAGGATTTCCCACCCAC
TGCCACGTAA

Synonyms

Publications