EWM26270.1, cds4410 (CDS) Nannochloropsis gaditana

Overview
NameEWM26270.1
Unique Namecds4410
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:559033..559153 +
Alignment locationCM002463.1:559390..559748 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26270.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100145g6.9678.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:559033..559153 +
CM002463.1supercontigCM002463.1:559390..559748 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
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BLAST of EWM26270.1 vs. NCBI_GenBank
Match: gi|585108270|gb|EWM26270.1| (hypothetical protein Naga_100145g6 [Nannochloropsis gaditana] >gi|585108271|gb|EWM26271.1| hypothetical protein Naga_100145g6 [Nannochloropsis gaditana])

HSP 1 Score: 334.724 bits (857), Expect = 2.383e-116
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0 
Query:    1 MQGKDFKIMRRNSLTAEVDGVWPNLEEEEDSYVPHKVHMKECMMLRRVLGADKADSLPRACKLNATSQANQGFLTRLSHFNESSDVAGVVNIKECHKLQDSLRMVAGGVTFLPASCNAMLAKEEETLKDKFETENAKVYARLKRRNSWVGKEDFPPTAT 159
            MQGKDFKIMRRNSLTAEVDGVWPNLEEEEDSYVPHKVHMKECMMLRRVLGADKADSLPRACKLNATSQANQGFLTRLSHFNESSDVAGVVNIKECHKLQDSLRMVAGGVTFLPASCNAMLAKEEETLKDKFETENAKVYARLKRRNSWVGKEDFPPTAT
Sbjct:    1 MQGKDFKIMRRNSLTAEVDGVWPNLEEEEDSYVPHKVHMKECMMLRRVLGADKADSLPRACKLNATSQANQGFLTRLSHFNESSDVAGVVNIKECHKLQDSLRMVAGGVTFLPASCNAMLAKEEETLKDKFETENAKVYARLKRRNSWVGKEDFPPTAT 159
The following BLAST results are available for this feature:
BLAST of EWM26270.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585108270|gb|EWM26270.1|2.383e-116100.00hypothetical protein Naga_100145g6 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4420rna4420Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications