rna4418, rna4418 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4418
Unique Name	rna4418
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1361
Alignment location	CM002463.1:557255..558117 -

Link to JBrowse

Properties


Property Name	Value
Product	uncharacterized protein
Orig transcript id	gnl\|cribi\|Naga_100145g7.9671.mrna
Orig protein id	gnl\|cribi\|Naga_100145g7.9671
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:557255..558117 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100145g7	gene4262	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26263.1	cds4408	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4418	rna4418-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:557255..558117-
coding sequence from alignment at CM002463.1:557255..558117-

mRNA sequence

>rna4418 ID=rna4418|Name=rna4418|organism=Nannochloropsis gaditana|type=mRNA|length=1361bp
ACAAACAGGGAGCAGATGCGGGGTCGGGGCGGGTAACTTGCATCGACTCG
GTCAACGCCATTCCAAGCACCAACCTCCCCCCCTCCAGCACTGGCACGTA
GATGGTCAAATCTCCGTCGCTGGCTCACGGTGACAGCAAGGCGGACACTG
GGAGCGAGCGACTCTCGTCATCGATACCGAAATATTCTATTGCTGTGCAA
GGAGGGCACTTTAATGGTAATTTTCCGCATTACTACTCTTTTCATCCTTT
CGAGTCACGCGTCGCTGCCCTGCTAGGCATACCCTCCACATGCGATCGTC
TGGCTCTTGGAAAGCAGAACAAAAACGAAGCGGCGTTAGCAGGTATTCTC
AAGTATGGAGACAATAAGAACGGTGGGAGAAAACGGCTTTTAATAGCTGA
CTGGGGCTGCAATACCGGTAGGCTGACCAGAGAGCTCTGTCGCCGCCTCA
GAAATCTCTCCCACCGACCTGTGGCAGGGCTAGGCCTGGACTTTGATGAA
AATCTCATTAATAGGGCAAAAGAGGAATCAGTCGAGGAGGAGAAGATAGA
GGGAGAGTGTGGGGACGTATCATTTGCGGCCGTCGATCTTGTCACGGATT
GGGCTCGGGCCGAGGAGATCATGCGGGCTTTTTTAGACAAAGATGGTGAC
CTGGGAGGAAATGACGACGACTCTCGTCCAAGGCATTCAAGACCTTTGGA
AAGTGTCGATGGGAGAGAGGAGACTCGTCAAGGCCGAACCATCAAGTTCG
ATCTGTTGACCATATTCTCAACGACGATGTGGATCCATCTAGTCCACGGA
GAGAACGCTCTTGAAACTTTCTTGAGGCGCGCTGCGGAATGGACGCACTG
TCTGGTCTTAGAGCCCCAGACACAAAAAAGCTACAAGGCGGCTCGCAAGC
GCCTGAAACGAGCAGGATTCGACCCGGCAGTGTATTTCCAACCGGTAACG
GTCGCAGACACGTCTGCCATGGTCATGAGGGAGGACGGGAAGAGGGAGTG
GGGGTTCACGAAAGCGATTAACTTGGGGGCTTCGTCAGCATGGGGCAGGG
AGCTCTTTGTGTACTACAGGGAGGAGAGACACGAGGAGGAAGAGGAAGGA
GAGAGCGATATCGGCGACGCGTCGGAGAAGGAGAGACCGAGGATCAAGGA
CGATCGGGGGCGGAAACGTAAATCGGAAGGATAAGAAATATTACAAAATG
AAAAAAAAGGTACTCCTGGTTGGCAGTTTGCACGCGATGCACAACACACG
AGCAGAATGAGAAACATTTGCACGGCTGCTCGGATGGATGTGCGTGGCGA
AATGCATGGGAATTGTGACGTAGACGCCTGTCCGAAGAATCACCCGCTTC
GGCATATATTT

protein sequence of rna4418

>rna4418-protein ID=rna4418-protein|Name=rna4418|organism=Nannochloropsis gaditana|type=polypeptide|length=143bp
MTDPQARLQAAVTTCMDKLDRAYIRKLSKNAYSCMAACHDHSSYTSQDVQ
QCVGACSTGLQEINALISNELQYFQNRLQRCQQSCEDEVRDTQAKAGGGK
PDPSQQAKLQGIYDKCVGKCVDTHLPLVNAMEAKLAGECKKRL

mRNA from alignment at CM002463.1:557255..558117-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4418 ID=rna4418|Name=rna4418|organism=Nannochloropsis gaditana|type=mRNA|length=863bp|location=Sequence derived from alignment at CM002463.1:557255..558117- (Nannochloropsis gaditana)
CAGATTTCAGAGACTCGTATCCTGTAGGCGATCACAAGCGAAGTGTGCGC
TTGCTTTCAGCTTTCCTCCTCGCTGCCGCCATCAATTTTCCGAGTGATGC
TCCATCCATCCGTATTCCTTTTTTTCATAACTTGGGCACATTGACGTATT
TGATACTCGGCAAACAGGTAGAAGTTCGATTTTGACAACCTCATCACTCT
GCCACAAGATGACCGACCCCCAAGCCCGCCTCCAAGCAGCCGTAACAACG
TGCATGGACAAACTAGACCGCGCCTACATACGAAAGCTGAGCAAAAATGC
TTACTCCTGCATGGCGGCGTGCCACGATCATAGCTCGTACACTTCTCAAG
ACGTCCAACAATGTGTTGGGGCTTGTTCGACGGGACTCCAGGAAATTAAT
GCTTTAATCTCAAACGAACTCCAGTACTTTCAAAATCGATTGCAGCGTTG
CCAGCAGTCTTGCGAGGATGAAGTCCGAGATACTCAAGCGAAAGCGGGTG
GGGGCAAACCTGATCCCTCTCAGCAAGCGAAGCTCCAAGGTATATACGAT
AAATGTGTGGGGAAATGCGTGGACACTCACCTGCCATTAGTGAACGCTAT
GGAGGCAAAGCTGGCAGGAGAGTGCAAGAAGCGCTTGTAATTCATGGATA
CGAAGGGTCGTGTTGGAATGGAGTTTATGAAGCATTGAAGGGCAAGCGAG
CCCATAAGTAAATGCTAAAAATGCAAAGAAATCAAAAGCAGAAAGTCTAA
ACACTTTAGGCTGACGAAGTTGCTCCCAAATGGCATGCGTGACAGATGAA
AATATATGCCGAAGCGGGTGATTCTTCGGACAGGCGTCTACGTCACAATT
CCCATGCATTTCG

Coding sequence (CDS) from alignment at CM002463.1:557255..558117-

>rna4418 ID=rna4418|Name=rna4418|organism=Nannochloropsis gaditana|type=CDS|length=432bp|location=Sequence derived from alignment at CM002463.1:557255..558117- (Nannochloropsis gaditana)
ATGACCGACCCCCAAGCCCGCCTCCAAGCAGCCGTAACAACGTGCATGGA
CAAACTAGACCGCGCCTACATACGAAAGCTGAGCAAAAATGCTTACTCCT
GCATGGCGGCGTGCCACGATCATAGCTCGTACACTTCTCAAGACGTCCAA
CAATGTGTTGGGGCTTGTTCGACGGGACTCCAGGAAATTAATGCTTTAAT
CTCAAACGAACTCCAGTACTTTCAAAATCGATTGCAGCGTTGCCAGCAGT
CTTGCGAGGATGAAGTCCGAGATACTCAAGCGAAAGCGGGTGGGGGCAAA
CCTGATCCCTCTCAGCAAGCGAAGCTCCAAGGTATATACGATAAATGTGT
GGGGAAATGCGTGGACACTCACCTGCCATTAGTGAACGCTATGGAGGCAA
AGCTGGCAGGAGAGTGCAAGAAGCGCTTGTAA

Synonyms

Publications