rna4416, rna4416 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4416
Unique Name	rna4416
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3243
Alignment location	CM002463.1:554256..555665 -

Link to JBrowse

Properties


Property Name	Value
Product	alkylated dna repair protein alkb-like protein
Orig transcript id	gnl\|cribi\|Naga_100145g9.9674.mrna
Orig protein id	gnl\|cribi\|Naga_100145g9.9674
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:554256..555665 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100145g9	gene4260	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26266.1	cds4406	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4416	rna4416-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:554256..555665-
coding sequence from alignment at CM002463.1:554256..555665-

mRNA sequence

>rna4416 ID=rna4416|Name=rna4416|organism=Nannochloropsis gaditana|type=mRNA|length=3243bp
CGGACAGGAGAGGCCGGGAGGATGATCGTCAGAGGACATCAATGTCGGCT
CCTACCTGCGACTAAGCAGACTAGGAACTTTCCCTTTCAGCTGCTGCTAC
TGCTGCTGCTATGCATCGGCAAAGGACATGGCTACACGTTTCTTCCCTTG
CCAGCATCCTCCAGGGCTGCTGCTCGATCGTGGGGCAAATTACGGACTGA
AATATTGGGCACTGGGCGCAAAGCGTCGGCCATATTACCATTTCGTGACC
CTGGGGCTCCCAACACGCATCATGACAAGAAGCAGCCCATGATCTTGCAC
TCTGCGACGGCTCCATCCCCGCCCACGACTCAAGCTGCCCCGTCCGAAAC
GGAAGAAGGTGTAGAGATGTTCATGGACGAGCTTGGCAAGATCGACGAGG
CTATGATGGACTCCTTGGAAGACATCGAGAGCAAAGCCAAGGCTATCGAT
AACAACTTGCGCGCAGGCTTCGAGGAGATTGAGAAGGGTTTCAAGGGCAC
CATGTCCAAGGCGACCCCCCCCGCCACGGCTGTGACTTCCCCTGGGAGCT
CTGACGCGGGAACGAATGGGCGCGTTGAGCCGTCGGCTCCCGGAGCCACG
GATGCAGCAGGTCTACTGGCCTCGGTCTCAGCCTCCGACTCGGCCCTGTC
TCCCTCGTCGCTGCCCGCCCCGGCCTCGGTGACAGTCTCCTCGGCCATTT
CCACCGGGGTGGGCTCGGGCGTGGGAAAGGAGAGCAAGACGAGGAGGAGA
GCGGTCATGGCCACCACGCCGCCGCCCACTGCCGAGGTCGAAGAATGGGT
GGGGACAGAGACCATGTATTCGTCCGCAGTGGACTTCCGCGCCTTGCGCA
CTGGGAAAATTGTCCGGCTCTGGTCCAATGGGGACCTGTCCACCTTCGAA
TTCAGTAAGGCCATGGCCACTCGGCTTGGGAGCAAGGTACAGAGCGCCGT
CTCCGGCGAAATAGACAGAGCGGTCTTGGCAGAGGCTCAGGTTCAGGCAA
TGCAGGCCAACAGTGCGGCCGAGGCCGCCACCTACATGGAAGGGGGCTGG
GCCCGACGAGGGAAGGGCTCGGCGATTTTCCGGACGCTGGAAATCTGGAA
GATTGCCTTTCAATTCATCTTGAAGGAGCTGAAGGTCAGGAAGATCACGG
ACGTGGAGGAGCAGCGCGCGGCCCGTCGAAAGGCGGCCGTTTTCGCTCGA
GAGGCCCTGCTCAAGTTGGGTCCTACTTTCATCAAGTTCGGCCAACTCCT
TTCCACGCGCATCGATATCTTGCCCAAGGAGTACACAGAGGAGCTCTCGT
ACCTGCAGGACAATGTTCCGGGCTTTTCGGGCAAGATTGCAAAGCAGGTG
GTGGCGGAAGAGCTGGGGATGTCCGTGGAGGAGGCCTTCGACACCTTCCA
AGAGGAGCCCTTGGCAGCCGCCTCGCTGGGCCAGGTGCATCGGGCCACCT
ACCAAGGACAGGAGCTCGCGATCAAGATCCAGCGACAGGGGTTGCGGGAA
TTGTTTGATTTGGACCTGAAAAACCTGAAAGTGTTGGCCATTCTGTTGGA
TAAATTCGATCCCAAGAACGACGGGGCGGCGCGGGACTGGAAGAGCATCT
ACGAGGAAAGTGCCAAGCTCTTGTACAAGGAAATCGACTACGAAAACGAG
GGCAGGAACGCCGAGCGTTTTGCTAACGATTTCAAGGACATCCCGTGGGT
GAAAGTCCCGAAGATCTACTGGGAATTCACGAGCAGGCGGGTGCTGGCCA
TGGAGTACTGTCCTGGCATCAAGGTGTCTGACATCGAGAAAATCGATGCG
GCGGGTATCGACCGAAAGCTTCTGGCTAAGCGATCGGCGGAGTCATACCT
CTTTCAGCTGTGTCGGCACGGATTTTTCCATTGCGACCCGCACCCGGGGA
ACGTGGCTTGTGACAACTACATGGACGGGCGCTTGATCTACTACGACTTT
GGAATGATGGATGAGTTCAGACCCGAGGTGAAGAAGGGCCTGGTCGATTT
GATCTTTTCGGTGTACGAAGGGGACGCCAAGGCGACCTGTGACGCCATGG
AGAGTGTGGGCATTCTACGTCGTGGCGCTGACCGAGTCTCGGTGGAAAAG
ATAGCGCGTTTTTTCCTGGCAGAGTTTGGGAGCACGTTGAACACAGGAGG
AAAATGGGTGAATGAATTGGACAAAGAGACGCAGAAGCAGCAGAGGGCCT
CGCGACGCGCACAGCTGGGAGCTGACTTGCTCTCGCTCTCTACGGATCTC
CCTTTCAAGTTTCCCCCAACCTTCACCTTTGTCTTCCGTGCCTTTACCTC
CTTGGACGGGATTGGCAAGGGCCTGGACAGTAGGTACGATTTGACCCGCT
TGGCCCAGCCCTTTCTCAAAGAATTGGTGGATTTGCGCGACGGCTCGGCC
ACCCTATCGCTCCTGAAGGGGTGGCAGAAAAAGCTTGGCTGGCGGCCGCA
GGACTTGGCCGCGGTTGTCACCTCCCCACGCAAAGTGGCCCAGATCGAGG
ACACGCTACGACGGGCGGAGCAAGGCGATCTCAAGCTCCGGGTGCGAGTG
CTGGAGAGTGAACGTGCTTTCAAACGCATCGACATAGTCCAATCGACCAT
GGTGAATGCGATCATGTCCTCCATGTTTTTGAACGCCGCGATCATGCTGT
CCGCGAACGCCGTATCACCCACGCTGGTGAACCGCTTCTTCATTAAAGGG
CTCTTCGGAGCCGCGACTCTCTTTGGCCTGAAAATTCCAGTGAATTATAT
GAAGCTGAGAAAATTCGATCAGACATCAGTGGAACTAGGGTTGGTGCAGA
AGGCGTGATGACGGATTGAAAGCTAGAAGGAGAGGTGATGCCAAGGAAGA
TAAATCAGAAGAGGAGCGAAAGGCGTTGCGGATATGATGATCAATGTGTG
CCATTCCGTGTGTAAATATACGGTGGGGGCGGGATGCGACAACACGGAGA
CGGTGGACGCCAATGTGACACTATGAGAGCTACACATAAAAGCAACCAGC
AGGCTTGGCCGCACGCGTGGCCCTGGGGCCAAACGATAGGCAAAAATGAA
GCAAGAGAGAATACAGGCTGGAACAGGGCAGAAAAGGTCAGATTTTGGCC
TCAAGCTTCGTAGTTGAGCGTGTATGTTGGGGGGGGGATATTAGCGAGGT
TGGCGGCAAGGGCCCACGCGACAAAATTCGAAGAAGTGAAGATTTAGAGC
TGCGAGTAAAAAATCTAGATCGTACCATATGCGTGTTTCTACA

protein sequence of rna4416

>rna4416-protein ID=rna4416-protein|Name=rna4416|organism=Nannochloropsis gaditana|type=polypeptide|length=469bp
MPPPTCSKEANRYKVSHLEERDDTAYRRAEKQYRRQRVPVNKRRNRFVRR
DPDLAHAIDFAKRGSRMDQRVLLLETVEGGREIYSVRDRPGFYYIRGALT
WQAQVRWARRCLTEFSRSPFTNITNHIRLALRPARDMECPHQSGQEALWD
AAVRRVESEGWEGGDEEDGEEKRTGQALQQALQDLYALRWANLGANYIWT
TRKYAVPVKEAAKEETGRGGGLREGETVRDSGGPHATNRDEEGGAQGTPS
SVHSRVRNLHEGKVGAEEVGLPERAAFPPSDGLPVPQALTDLAREVLEDI
AHAESHRPCASKGERAFPLPMNFRGEAGIVNYYPPESSMGGHVDDAEGAT
SVPLVSFSLGLGCVFLLGGKDKEVAPVPLVFRSGDCMVMAGEARLAFHGV
PCILEESAGPDPALGQWTRVAAVLREDDGASRAAEARMLSHYLTSSRLNF
NVRQVWRRELCEGAEGLRP

mRNA from alignment at CM002463.1:554256..555665-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4416 ID=rna4416|Name=rna4416|organism=Nannochloropsis gaditana|type=mRNA|length=1410bp|location=Sequence derived from alignment at CM002463.1:554256..555665- (Nannochloropsis gaditana)
ATGCCTCCTCCAACCTGCTCCAAAGAAGCTAATCGGTACAAAGTCTCACA
CCTTGAAGAGCGTGATGACACAGCCTACCGGCGCGCAGAGAAACAATATC
GACGCCAGCGCGTCCCCGTTAACAAACGTCGCAACCGCTTCGTCCGCCGG
GACCCTGACCTCGCCCACGCGATCGACTTTGCAAAACGAGGCAGTCGGAT
GGACCAGCGTGTGCTGCTTTTAGAAACGGTGGAAGGCGGTCGTGAAATTT
ACAGCGTTCGTGATCGCCCTGGGTTCTACTATATACGGGGTGCCTTGACC
TGGCAGGCACAAGTGCGTTGGGCACGTCGGTGCCTGACGGAATTTTCCCG
CTCGCCATTCACCAACATCACGAACCACATCCGTCTCGCCCTCCGCCCGG
CGCGCGACATGGAATGCCCGCATCAGTCTGGTCAAGAGGCTCTATGGGAC
GCAGCAGTACGGCGGGTAGAATCTGAGGGGTGGGAAGGAGGTGACGAGGA
GGACGGAGAGGAGAAGAGGACGGGTCAAGCCTTGCAACAGGCCCTTCAAG
ATTTATACGCCTTGCGATGGGCTAACCTAGGTGCAAACTACATTTGGACG
ACGCGGAAATACGCAGTACCTGTGAAAGAGGCCGCGAAAGAGGAGACGGG
GCGGGGCGGGGGCCTGAGGGAGGGCGAGACTGTCAGGGACTCGGGAGGGC
CGCATGCCACGAATAGGGACGAGGAGGGGGGTGCACAAGGCACCCCGTCT
AGTGTGCACTCCCGCGTGAGGAATTTACACGAAGGAAAGGTTGGGGCGGA
GGAGGTCGGGCTGCCTGAAAGAGCGGCTTTTCCGCCATCGGACGGTCTCC
CCGTGCCCCAGGCGTTGACCGATTTAGCGCGGGAGGTCCTCGAGGACATT
GCCCACGCGGAAAGCCACCGTCCCTGCGCCAGCAAGGGGGAGAGGGCGTT
CCCTCTACCGATGAATTTCCGCGGGGAGGCAGGGATCGTAAACTATTACC
CTCCGGAGAGTAGCATGGGGGGCCACGTCGACGACGCGGAGGGGGCCACG
AGCGTCCCTCTCGTCTCCTTCAGCCTGGGTTTGGGCTGCGTCTTCCTTTT
GGGGGGAAAGGACAAGGAGGTAGCGCCTGTGCCGCTTGTTTTCCGAAGTG
GCGATTGCATGGTCATGGCGGGAGAAGCGCGTTTGGCTTTCCATGGAGTG
CCCTGTATCCTGGAAGAGAGCGCCGGGCCGGATCCCGCATTGGGGCAATG
GACGAGGGTGGCGGCAGTCTTGCGGGAGGATGACGGAGCAAGTCGCGCGG
CGGAGGCTCGCATGCTGTCGCACTATTTGACATCCTCCAGGCTGAATTTC
AACGTGAGGCAAGTCTGGAGACGGGAGCTTTGCGAGGGGGCAGAAGGCTT
GCGCCCTTGA

Coding sequence (CDS) from alignment at CM002463.1:554256..555665-

>rna4416 ID=rna4416|Name=rna4416|organism=Nannochloropsis gaditana|type=CDS|length=1410bp|location=Sequence derived from alignment at CM002463.1:554256..555665- (Nannochloropsis gaditana)
ATGCCTCCTCCAACCTGCTCCAAAGAAGCTAATCGGTACAAAGTCTCACA
CCTTGAAGAGCGTGATGACACAGCCTACCGGCGCGCAGAGAAACAATATC
GACGCCAGCGCGTCCCCGTTAACAAACGTCGCAACCGCTTCGTCCGCCGG
GACCCTGACCTCGCCCACGCGATCGACTTTGCAAAACGAGGCAGTCGGAT
GGACCAGCGTGTGCTGCTTTTAGAAACGGTGGAAGGCGGTCGTGAAATTT
ACAGCGTTCGTGATCGCCCTGGGTTCTACTATATACGGGGTGCCTTGACC
TGGCAGGCACAAGTGCGTTGGGCACGTCGGTGCCTGACGGAATTTTCCCG
CTCGCCATTCACCAACATCACGAACCACATCCGTCTCGCCCTCCGCCCGG
CGCGCGACATGGAATGCCCGCATCAGTCTGGTCAAGAGGCTCTATGGGAC
GCAGCAGTACGGCGGGTAGAATCTGAGGGGTGGGAAGGAGGTGACGAGGA
GGACGGAGAGGAGAAGAGGACGGGTCAAGCCTTGCAACAGGCCCTTCAAG
ATTTATACGCCTTGCGATGGGCTAACCTAGGTGCAAACTACATTTGGACG
ACGCGGAAATACGCAGTACCTGTGAAAGAGGCCGCGAAAGAGGAGACGGG
GCGGGGCGGGGGCCTGAGGGAGGGCGAGACTGTCAGGGACTCGGGAGGGC
CGCATGCCACGAATAGGGACGAGGAGGGGGGTGCACAAGGCACCCCGTCT
AGTGTGCACTCCCGCGTGAGGAATTTACACGAAGGAAAGGTTGGGGCGGA
GGAGGTCGGGCTGCCTGAAAGAGCGGCTTTTCCGCCATCGGACGGTCTCC
CCGTGCCCCAGGCGTTGACCGATTTAGCGCGGGAGGTCCTCGAGGACATT
GCCCACGCGGAAAGCCACCGTCCCTGCGCCAGCAAGGGGGAGAGGGCGTT
CCCTCTACCGATGAATTTCCGCGGGGAGGCAGGGATCGTAAACTATTACC
CTCCGGAGAGTAGCATGGGGGGCCACGTCGACGACGCGGAGGGGGCCACG
AGCGTCCCTCTCGTCTCCTTCAGCCTGGGTTTGGGCTGCGTCTTCCTTTT
GGGGGGAAAGGACAAGGAGGTAGCGCCTGTGCCGCTTGTTTTCCGAAGTG
GCGATTGCATGGTCATGGCGGGAGAAGCGCGTTTGGCTTTCCATGGAGTG
CCCTGTATCCTGGAAGAGAGCGCCGGGCCGGATCCCGCATTGGGGCAATG
GACGAGGGTGGCGGCAGTCTTGCGGGAGGATGACGGAGCAAGTCGCGCGG
CGGAGGCTCGCATGCTGTCGCACTATTTGACATCCTCCAGGCTGAATTTC
AACGTGAGGCAAGTCTGGAGACGGGAGCTTTGCGAGGGGGCAGAAGGCTT
GCGCCCTTGA

Synonyms

Publications