EWM26266.1, cds4406 (CDS) Nannochloropsis gaditana

Overview
NameEWM26266.1
Unique Namecds4406
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:554256..555665 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26266.1
Productalkylated dna repair protein alkb-like protein
Orig transcript idgnl|cribi|Naga_100145g9.9674.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:554256..555665 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0016706oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0016491oxidoreductase activity
Vocabulary: INTERPRO
TermDefinition
IPR005123Oxoglu/Fe-dep_dioxygenase
IPR027450AlkB-like
Homology
BLAST of EWM26266.1 vs. NCBI_GenBank
Match: gi|585108266|gb|EWM26266.1| (alkylated dna repair protein alkb-like protein [Nannochloropsis gaditana])

HSP 1 Score: 958.362 bits (2476), Expect = 0.000e+0
Identity = 469/469 (100.00%), Postives = 469/469 (100.00%), Query Frame = 0
Query:    1 MPPPTCSKEANRYKVSHLEERDDTAYRRAEKQYRRQRVPVNKRRNRFVRRDPDLAHAIDFAKRGSRMDQRVLLLETVEGGREIYSVRDRPGFYYIRGALTWQAQVRWARRCLTEFSRSPFTNITNHIRLALRPARDMECPHQSGQEALWDAAVRRVESEGWEGGDEEDGEEKRTGQALQQALQDLYALRWANLGANYIWTTRKYAVPVKEAAKEETGRGGGLREGETVRDSGGPHATNRDEEGGAQGTPSSVHSRVRNLHEGKVGAEEVGLPERAAFPPSDGLPVPQALTDLAREVLEDIAHAESHRPCASKGERAFPLPMNFRGEAGIVNYYPPESSMGGHVDDAEGATSVPLVSFSLGLGCVFLLGGKDKEVAPVPLVFRSGDCMVMAGEARLAFHGVPCILEESAGPDPALGQWTRVAAVLREDDGASRAAEARMLSHYLTSSRLNFNVRQVWRRELCEGAEGLRP 469
            MPPPTCSKEANRYKVSHLEERDDTAYRRAEKQYRRQRVPVNKRRNRFVRRDPDLAHAIDFAKRGSRMDQRVLLLETVEGGREIYSVRDRPGFYYIRGALTWQAQVRWARRCLTEFSRSPFTNITNHIRLALRPARDMECPHQSGQEALWDAAVRRVESEGWEGGDEEDGEEKRTGQALQQALQDLYALRWANLGANYIWTTRKYAVPVKEAAKEETGRGGGLREGETVRDSGGPHATNRDEEGGAQGTPSSVHSRVRNLHEGKVGAEEVGLPERAAFPPSDGLPVPQALTDLAREVLEDIAHAESHRPCASKGERAFPLPMNFRGEAGIVNYYPPESSMGGHVDDAEGATSVPLVSFSLGLGCVFLLGGKDKEVAPVPLVFRSGDCMVMAGEARLAFHGVPCILEESAGPDPALGQWTRVAAVLREDDGASRAAEARMLSHYLTSSRLNFNVRQVWRRELCEGAEGLRP
Sbjct:    1 MPPPTCSKEANRYKVSHLEERDDTAYRRAEKQYRRQRVPVNKRRNRFVRRDPDLAHAIDFAKRGSRMDQRVLLLETVEGGREIYSVRDRPGFYYIRGALTWQAQVRWARRCLTEFSRSPFTNITNHIRLALRPARDMECPHQSGQEALWDAAVRRVESEGWEGGDEEDGEEKRTGQALQQALQDLYALRWANLGANYIWTTRKYAVPVKEAAKEETGRGGGLREGETVRDSGGPHATNRDEEGGAQGTPSSVHSRVRNLHEGKVGAEEVGLPERAAFPPSDGLPVPQALTDLAREVLEDIAHAESHRPCASKGERAFPLPMNFRGEAGIVNYYPPESSMGGHVDDAEGATSVPLVSFSLGLGCVFLLGGKDKEVAPVPLVFRSGDCMVMAGEARLAFHGVPCILEESAGPDPALGQWTRVAAVLREDDGASRAAEARMLSHYLTSSRLNFNVRQVWRRELCEGAEGLRP 469          
BLAST of EWM26266.1 vs. NCBI_GenBank
Match: gi|168050410|ref|XP_001777652.1| (predicted protein [Physcomitrella patens] >gi|162670995|gb|EDQ57554.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 152.14 bits (383), Expect = 6.877e-38
Identity = 136/445 (30.56%), Postives = 199/445 (44.72%), Query Frame = 0
Query:   24 TAYRRAEKQYRR-QRVPVNKRRNRFVRRD----PDLAHAIDFAKRGSRMDQRVLLLETVEG-GREIYSVRDRPGFYYIRGALTWQAQVRWARRCLTEFSRSPFTNITNHIRLALRPARDMECPHQSGQEALWDAAVRRVESEGWEGGDEEDGEEKRTGQALQ----QALQDLYALRWANLGANYIWTTRKYAVPVKEAAKEETGRGGGLREGETVRDSGGPHATNRDEEGGAQGTPSSVHSRVRNLHEGKVGAEEVGLPERAAFPPSDGLP---VPQALTDLAREVLEDIAHAESHRPCASKGERAFPLPMNFRGEAGIVNYYPPESSMGGHVDDAEGATSVPLVSFSLGLGCVFLLGGKDKEVAPVPLVFRSGDCMVMAGEARLAFHGVPCILEESAGPDPALGQWTRVAAVLREDDGASRAAEARMLSHYLTSSRLNFNVRQV 455
            TA+R  EK Y+R   V   K RN+  RR      D++  +DF K G   +  +  +  VEG G  +Y++   PGFY+I  AL    Q+ WA  CLT F + P  N TNH  +   P  ++    Q  +  L + A  + E +      E    +++   +++    +   D+  +       N I T+               G GG   E    RD       + D    +     S  + VR L    VG +     +RA    ++ LP   +P  L DLAR + +     E                 +F+ EA IVN+Y P+  +GGHVDD E   S P+VS SLG   +FLLGG  ++  P  +  RSGD ++MAG AR  FHGVP I  E+   +  L  +T ++ V    DG     + R +  YL SSR+N N+RQV
Sbjct:   14 TAFRSTEKAYKRYTHVSSAKSRNQHSRRAQVPATDVSKVLDFKKLGEDGEYNIEGVSRVEGSGWPVYTIDKHPGFYFIPEALNKAEQLYWATECLTTFPQPP--NRTNHNAM-YGPIANLWAAFQENK-ILVEVASGKQERDLISNSAETRSVDEKISDSIESVRAEVSDDITVVEKNRFHDNGITTS--------------GGDGGNSWE---FRD------CSTDFLKTSSAKTVSSETLVRKLRWATVGIQ-FDWSKRAY---NEALPFQEIPPKLADLARRLAKPAMENE-----------------DFKAEAAIVNFYGPDDMLGGHVDDMEADMSKPIVSISLGCKAIFLLGGTTRDEPPAAMFVRSGDVVLMAGPARHCFHGVPRIFSEAK--ESELPDFTSMSDV----DG----IQPRSIVKYLESSRINVNIRQV 400          
BLAST of EWM26266.1 vs. NCBI_GenBank
Match: gi|293332709|ref|NP_001168927.1| (uncharacterized LOC100382739 [Zea mays] >gi|223973785|gb|ACN31080.1| unknown [Zea mays])

HSP 1 Score: 141.354 bits (355), Expect = 6.455e-34
Identity = 139/460 (30.22%), Postives = 197/460 (42.83%), Query Frame = 0
Query:   24 TAYRRAEKQYRRQRVPVNKRRNRFVRRD-----------PDLAHAIDF----AKRGSRMDQRVLLLETVEGGREIYSVRDRPGFYYIRGALTWQAQVRWARRCLTEF----SRSPFTNITNHIRLALRPARDMECPHQSGQEALWDAAVR-----RVESEGWEGGDEED--GEEKRTGQALQQALQDLYALRWANLGANYIWTTRKYAVPVKEAAKEETGRGGGLREGETVRDSGGPHATNRDEEGGAQGTPSSVHSRVRNLHEGKVGAEEVGLPERAAFPPSDGLPVPQALTDLAREVLEDIAHAESHRPCASKGERAFPLPMNFRGEAGIVNYYPPESSMGGHVDDAEGATSVPLVSFSLGLGCVFLLGGKDKEVAPVPLVFRSGDCMVMAGEARLAFHGVPCILEESAGPD-PALGQWTRVAAVLREDDGASRAAEARMLSHYLTSSRLNFNVRQVW 456
            TA+RRAEKQY+  +    K R+R   R             DL+  +DF    A  G   D  +   E     R ++   DRPGFY+I GAL+ + Q  W R  L  F    +R+  T I   I   L  A + +   ++    + +   +     + ES+ ++  D E   GEE R+  A     +    LRW+ LG  + W+ R                        T+R S  P          +Q  P S    V   ++       V LP            +P AL  LA+++           P    GE        F+ EA IVNYY P   +GGHVDD E   + P+VS SLG  C+FLLGGK ++  P  +  RSGD ++MAGEAR  FHGVP I  ES   + PAL     ++ +   DD          +  Y+ +SR+N N+RQV+
Sbjct:   13 TAFRRAEKQYKLYKTLNVKGRSRSRSRSGCRPSSGEGGGADLSAVVDFHALLAADGELPDG-IGRRECPGFDRPVFCFLDRPGFYFIPGALSTEEQCCWIRESLKTFPQPPNRTNLTAIYGSISDLLIAAENQQILVEAENPDIQERNKQNNCGGKTESKYFKFVDSESQKGEEHRSNAATTLVRK----LRWSTLGLQFDWSKR------------------------TIR-SKSPR--------NSQEKPLSSSRLVERNYD-------VSLPHNK---------IPGALASLAKKM---------AIPAMPSGEE-------FKPEAAIVNYYGPSDMLGGHVDDMEADWTKPIVSISLGCKCIFLLGGKTRDEVPTAMFLRSGDIVLMAGEARERFHGVPRIFTESDQQEIPAL-----ISQLSSGDD--------VFILEYIKNSRININIRQVY 389          
BLAST of EWM26266.1 vs. NCBI_GenBank
Match: gi|511000366|gb|EPB81909.1| (hypothetical protein HMPREF1544_11360 [Mucor circinelloides f. circinelloides 1006PhL])

HSP 1 Score: 124.02 bits (310), Expect = 1.291e-27
Identity = 67/179 (37.43%), Postives = 103/179 (57.54%), Query Frame = 0
Query:  281 DGLPVPQALTDLAREV---LEDIAHAESHRPCASKGERAFPLPMNFRGEAGIVNYYPPESSMGGHVDDAEGATSVPLVSFSLGLGCVFLLGGKDKEVAPVPLVFRSGDCMVMAGEARLAFHGVPCILEESAGPDPALGQWTRVAAVLREDDGASRAAEARMLSHYLTSSRLNFNVRQVW 456
            D +P+P A++DL + V    EDI   E+  P  ++ + A     +F+ EAGI+N+Y  +S++ GHVD +E     PL+S SLG  C++L+GG  ++  P+PL   SGD +VM   AR A+HGVP ILE +  PD  L +          DD      + +M   Y+ ++R+N N+RQV+
Sbjct:  253 DPIPIPHAISDLMKAVATATEDIGCQEAEVPWKNQYKGA-----DFKPEAGIINFYQLQSTLMGHVDQSEINMEAPLISMSLGHACIYLIGGNTRDTKPIPLKLNSGDMIVMTAIARRAYHGVPRILENTL-PDYMLPE--------NVDD-----EDWKMYGEYMKTTRINLNIRQVF 412          
BLAST of EWM26266.1 vs. NCBI_GenBank
Match: gi|1026273414|gb|OAD06421.1| (hypothetical protein MUCCIDRAFT_106998 [Mucor circinelloides f. lusitanicus CBS 277.49])

HSP 1 Score: 123.635 bits (309), Expect = 2.340e-27
Identity = 68/182 (37.36%), Postives = 99/182 (54.40%), Query Frame = 0
Query:  284 PVPQALTDLAREVL---EDIAHAESHRPCASKGERAFPLPMNFRGEAGIVNYYPPESSMGGHVDDAEGATSVPLVSFSLGLGCVFLLGGKDKEVAPVPLVFRSGDCMVMAGEARLAFHGVPCILEESAGPDPALGQWTRVAAVLREDDGASRAAEARMLSHYLTSSRLNFNVRQVWRRELCE 462
            P P  + DL + V+   E+I H +       KGE       +F  EAG++NYY    ++ GHVD +E     PLVS SLG  C++L+GG  ++  PVPL+ RSGD +VM G  R AFHGVP I+E +  PD            L  +D    A + ++   ++++SR+N N+RQV+ R   E
Sbjct:  263 PFPADVADLTKAVVTAVENIGHGDWIN--QYKGE-------DFNAEAGVINYYQYRDTLMGHVDRSEMNMEAPLVSLSLGQSCIYLIGGLTRDTVPVPLLLRSGDIVVMTGPCRKAFHGVPLIMENTL-PD-----------YLSNNDQYEDAPDWKLFGDFMSTSRINLNIRQVYPRHQSE 423          
BLAST of EWM26266.1 vs. NCBI_GenBank
Match: gi|669027131|emb|CDM80371.1| (unnamed protein product [Triticum aestivum])

HSP 1 Score: 122.094 bits (305), Expect = 3.127e-27
Identity = 64/141 (45.39%), Postives = 83/141 (58.87%), Query Frame = 0
Query:  316 AFPLPMNFRGEAGIVNYYPPESSMGGHVDDAEGATSVPLVSFSLGLGCVFLLGGKDKEVAPVPLVFRSGDCMVMAGEARLAFHGVPCILEESAGPDPALGQWTRVAAVLREDDGASRAAEARMLSHYLTSSRLNFNVRQVW 456
            A P    F  EA IVNYY P   +GGHVDD E   + P+VS SLG  C+FLLGGK ++ AP P+  RSGD ++MAGEAR  FHGVP I  E    D      + + + L +DD        R +  Y+ +SR+N N+RQV+
Sbjct:  237 AMPFGEEFAAEAAIVNYYGPSDMLGGHVDDMEADWTKPIVSISLGCKCIFLLGGKTRDEAPTPMFLRSGDIVLMAGEARERFHGVPRIFTEGDQQD-----ISGLVSELSDDDD-------RFILDYIHNSRININIRQVY 365          
BLAST of EWM26266.1 vs. NCBI_GenBank
Match: gi|1149846606|ref|XP_020186739.1| (alpha-ketoglutarate-dependent dioxygenase alkB isoform X2 [Aegilops tauschii subsp. tauschii] >gi|475560567|gb|EMT13580.1| hypothetical protein F775_06677 [Aegilops tauschii])

HSP 1 Score: 122.094 bits (305), Expect = 4.026e-27
Identity = 64/141 (45.39%), Postives = 83/141 (58.87%), Query Frame = 0
Query:  316 AFPLPMNFRGEAGIVNYYPPESSMGGHVDDAEGATSVPLVSFSLGLGCVFLLGGKDKEVAPVPLVFRSGDCMVMAGEARLAFHGVPCILEESAGPDPALGQWTRVAAVLREDDGASRAAEARMLSHYLTSSRLNFNVRQVW 456
            A P    F  EA IVNYY P   +GGHVDD E   + P+VS SLG  C+FLLGGK ++ AP P+  RSGD ++MAGEAR  FHGVP I  E    D      + + + L +DD        R +  Y+ +SR+N N+RQV+
Sbjct:  242 AMPSGEEFTAEAAIVNYYGPSDMLGGHVDDMEADWTKPIVSISLGCKCIFLLGGKTRDEAPTPMFLRSGDIVLMAGEARERFHGVPRIFTEGDQQD-----ISGLVSELSDDDD-------RFILDYIHNSRININIRQVY 370          
BLAST of EWM26266.1 vs. NCBI_GenBank
Match: gi|108864398|gb|ABA93798.2| (Alkylated DNA repair protein alkB, putative, expressed [Oryza sativa Japonica Group] >gi|215692905|dbj|BAG88325.1| unnamed protein product [Oryza sativa Japonica Group])

HSP 1 Score: 115.161 bits (287), Expect = 4.121e-27
Identity = 62/141 (43.97%), Postives = 84/141 (59.57%), Query Frame = 0
Query:  316 AFPLPMNFRGEAGIVNYYPPESSMGGHVDDAEGATSVPLVSFSLGLGCVFLLGGKDKEVAPVPLVFRSGDCMVMAGEARLAFHGVPCILEESAGPDPALGQWTRVAAVLREDDGASRAAEARMLSHYLTSSRLNFNVRQVW 456
            A P    F+ EA IVNYY P   +GGHVDD E   S P+VS SLG  C+FLLGGK ++  P  +  RSGD ++MAGEAR  FHGVP I     G D A      ++A++ +      A +   + +Y+ +SR+N N+RQV+
Sbjct:    5 AMPSGEEFKPEAAIVNYYGPSDMLGGHVDDMEADWSKPIVSISLGCKCIFLLGGKTRDEVPTAMFLRSGDIVLMAGEARECFHGVPRIF---TGSDQA-----EISALVPQ----LSAEDDSFILNYIQNSRININIRQVY 133          
BLAST of EWM26266.1 vs. NCBI_GenBank
Match: gi|1149846604|ref|XP_020186733.1| (alpha-ketoglutarate-dependent dioxygenase alkB isoform X1 [Aegilops tauschii subsp. tauschii])

HSP 1 Score: 122.094 bits (305), Expect = 4.331e-27
Identity = 64/141 (45.39%), Postives = 83/141 (58.87%), Query Frame = 0
Query:  316 AFPLPMNFRGEAGIVNYYPPESSMGGHVDDAEGATSVPLVSFSLGLGCVFLLGGKDKEVAPVPLVFRSGDCMVMAGEARLAFHGVPCILEESAGPDPALGQWTRVAAVLREDDGASRAAEARMLSHYLTSSRLNFNVRQVW 456
            A P    F  EA IVNYY P   +GGHVDD E   + P+VS SLG  C+FLLGGK ++ AP P+  RSGD ++MAGEAR  FHGVP I  E    D      + + + L +DD        R +  Y+ +SR+N N+RQV+
Sbjct:  244 AMPSGEEFTAEAAIVNYYGPSDMLGGHVDDMEADWTKPIVSISLGCKCIFLLGGKTRDEAPTPMFLRSGDIVLMAGEARERFHGVPRIFTEGDQQD-----ISGLVSELSDDDD-------RFILDYIHNSRININIRQVY 372          
BLAST of EWM26266.1 vs. NCBI_GenBank
Match: gi|223972739|gb|ACN30557.1| (unknown [Zea mays])

HSP 1 Score: 114.775 bits (286), Expect = 6.071e-27
Identity = 63/142 (44.37%), Postives = 83/142 (58.45%), Query Frame = 0
Query:  316 AFPLPMNFRGEAGIVNYYPPESSMGGHVDDAEGATSVPLVSFSLGLGCVFLLGGKDKEVAPVPLVFRSGDCMVMAGEARLAFHGVPCILEESAGPD-PALGQWTRVAAVLREDDGASRAAEARMLSHYLTSSRLNFNVRQVW 456
            A P    F+ EA IVNYY P   +GGHVDD E   + P+VS SLG  C+FLLGGK ++  P  +  RSGD ++MAGEAR  FHGVP I  ES   + PAL     ++ +   DD          +  Y+ +SR+N N+RQV+
Sbjct:    5 AMPSGEEFKPEAAIVNYYGPSDMLGGHVDDMEADWTKPIVSISLGCKCIFLLGGKTRDEVPTAMFLRSGDIVLMAGEARERFHGVPRIFTESDQQEIPAL-----ISQLSSGDD--------VFILEYIKNSRININIRQVY 133          
The following BLAST results are available for this feature:
BLAST of EWM26266.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108266|gb|EWM26266.1|0.000e+0100.00alkylated dna repair protein alkb-like protein [Na... [more]
gi|168050410|ref|XP_001777652.1|6.877e-3830.56predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|293332709|ref|NP_001168927.1|6.455e-3430.22uncharacterized LOC100382739 [Zea mays] >gi|223973... [more]
gi|511000366|gb|EPB81909.1|1.291e-2737.43hypothetical protein HMPREF1544_11360 [Mucor circi... [more]
gi|1026273414|gb|OAD06421.1|2.340e-2737.36hypothetical protein MUCCIDRAFT_106998 [Mucor circ... [more]
gi|669027131|emb|CDM80371.1|3.127e-2745.39unnamed protein product [Triticum aestivum][more]
gi|1149846606|ref|XP_020186739.1|4.026e-2745.39alpha-ketoglutarate-dependent dioxygenase alkB iso... [more]
gi|108864398|gb|ABA93798.2|4.121e-2743.97Alkylated DNA repair protein alkB, putative, expre... [more]
gi|1149846604|ref|XP_020186733.1|4.331e-2745.39alpha-ketoglutarate-dependent dioxygenase alkB iso... [more]
gi|223972739|gb|ACN30557.1|6.071e-2744.37unknown [Zea mays][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4416rna4416Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications