rna4413, rna4413 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4413
Unique Name	rna4413
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2580
Alignment location	CM002463.1:543719..546320 +

Link to JBrowse

Properties


Property Name	Value
Product	glutamyl-trna amidotransferase subunit a
Orig transcript id	gnl\|cribi\|Naga_100145g14.9676.mrna
Orig protein id	gnl\|cribi\|Naga_100145g14.9676
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:543719..546320 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100145g14	gene4257	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4413	rna4413-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26268.1	cds4403	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:543719..546320+
coding sequence from alignment at CM002463.1:543719..546320+

mRNA sequence

>rna4413 ID=rna4413|Name=rna4413|organism=Nannochloropsis gaditana|type=mRNA|length=2580bp
AGTACGCTGCGAGTCGCGGTGTGGGTACACATGCATCGTGGAGGCTGATT
GTTTTGGGGACACCACTTTGGTCATAATAACGGACATTTTGAGGCTGATT
TTTCCTTTTTTTTTTGACACGCACGTGGTGCAGCGAAACATAAACCGAGA
ATGCCGCCACTCGGGGAAAATGCACGCGCCAAGGCCTGTCAAGCACCGCC
ATGTTTGAGACACCCTCAGAAGCCGATCATACCTTCAGGGTGCAAGACAA
GCAGTCGTGCCTTTACAGAAAGCAAATCCGCGGACGAGCCCACGGGACTT
CAGGCTCCCGCCGGGAGCATACCAGGTGCCATCCCACCCCCATTTGCATC
CCCTGATTTCGGCCTTCACAAGGCGTCGATCGTCGCCATTCCTCCGCAAC
ATATCGCGTCGAAGCTCCCATTCCCGTACCTTGCGCCGCGTTGGGAGCTG
GCGTCCTCCCGACGGGCCTCGCGCACAAGCAACCCCCTCCGCAACATAGT
CGACCATCTCAAACCCGACCCCGAGCACCCCTCTCCGGTGCTCAATTTCG
CCCTGGGCGACCCTACTGCCTATGCCACTGAAGGCCACCTGCGTTGTCCT
GATGTCTTGATCGAGGCAGTCGCAAAGCATGTGGAAGAGGGCCTTCATAA
TGGCTATGCTTGCTCGGCGGGGACGTTGGAGGCGCGCCAAGCCCTAGCAG
CGGCCTATTCTTACCCGGGACGCAAGCTCTTGACGGCGGAGGACGTGATC
ATTGCAAGTGGAGGGTCAGGAGCCTTGGAGATTGTCCTGACCGCGTTACT
GGACGAAGGAGACGCCGTCCTCATCCCGCGGCCGGGTTTCGCCCTTTACC
AAGTGCTGGCCCGTAGCCTGGGAGCGGAGGCTGTTCCCTACGACTTGGTG
CCCGAAGATAACTGGGCAATCGATCTGGCCGCCTTGGACGCCGCCATCGC
TGGCTACAACAATCGGCAGACGGTGGGAAACGGCGGAGGCGCAGGTCTCC
AAGGCGACGTGAGAGGGATGCCTGGGTCGATGCGCTCTGATGGCCCCTCG
ACCTCTCGGACCTTGCCTGCCCGGATCAAAGCCATTCTGGTCAACAATCC
CAGCAACCCCTGCGGCAACGTCCTCAGCAAGGAAAACCTCTTGGGCCTCC
TGGATGTGGCGCGTAGACACAGCCTCCCCATAGTCGCGGATGAGATCTAC
GGCCGGCTGGTATTCCCGGGAGAGTTCTTTCACCCCCTAGGGGCCCTGAC
CACAGACGTGCCGGTCCTGACAGTGGGGGGCATGGCCAAGCAATTTGCCG
TGCCGGGGTGGAGGGTGGGGTGGCTGCTGCTCCATGACCCGTTGGGAGCC
TTGGATGGGCCCGGGGAGGAAGAGACCTGCGACCCGCCACAGCAGAGGAG
GGCGAGCTTGCGGCGCGGGCTGAAGAATCTCACTCAACTCGTCCTTGGCG
CCAATACGCTGGCACAGTCTACCATTCCCTTGCTTTTCTCCTCGAAACTC
GGCCCTCGTCTCGAGGCTTTCTATGCCAATTACGTCAGTATCTTGGTCGA
CAATGCTAATTTTATCAAAGCGACGCTGCTTCCCGTGGCCGAGGGTAGGG
AGGGTAAGGAAGGCATTTGGGGAGTGACGTTGTCAAATTTTCCACAGGGA
GCTCTCTATCTGCTCTTGAAATTGTCACTGGATAAATTTATCGACCTCCC
GGACGATGTGGCTTTTTGCGCCGCTTTACTCAAGGAAGAGAATTTGGTCC
TCTTGCCTGGGCAGTGTTTCGGCATCCCGGGTTACGTGAGGCTGGTCTTG
ACCCCTCCTCGGCCCGTCCTAGTGGAAGGATTAGACCGTCTTCGGACCTT
CTGCTTCCGGCATGCTCTTGTGACAAAAGCTGAGGAAGCGAGGCCGTTGC
TGCCCATGGGGTGTCATGATAAAATAGCTAAGTGATGGCGGCGCGCGGTT
ACCGTTGCAATGGAATCGTCACGATGGCAGAGCGTTCTGGTATTTACCAG
ACGCGGTGGTCCTCTTCAAGGAGACTGTACAGGAGTTATTCAGCTTTCTG
TTTAGTGGGTGGAAAGGTCAGTCTGTAGCTTAGTGAGCGACAGCGTCATT
CAACCGTCTGTGCATATATTATTTAACTTGCAAACTGTTTTCAGAATAGA
AAAAATAAACCGACATAAATAGTGCATGGGGTATCTAGCAAATTGTGGGC
TCATGAAGTCTGTGTGGTTTGCGAGTTGCGTGTCATATTGTTGAATAACT
TTTAAACTCGCGCCTAGGGGTTCATGATCGTGTGCTATGTCTCGATGAGA
TCCAATTCAAAATTGGCGAAACTTTATTCGCGTCAGCTCAGCTTTTTACT
AAGTTTCTGAAATAATGTGCAAAGCTTACGGGTCTAAAAAAGATGTGTGA
AGTAATATGTAGGAATACAGAAAAAAGTGAACGAGTATCTCATATAATTT
AAGTACTACTTGTTCCACTTCCTTTGTCTCTGAAAGTCTTGTTCAGTCTG
TCCATTTCTGTGAGCGCAAAGGGAAGTGAATCTGTGCAACCCCCGCCTGC
TCCTGACGTCTTCGTTGTTGGTCCGCCTCC

protein sequence of rna4413

>rna4413-protein ID=rna4413-protein|Name=rna4413|organism=Nannochloropsis gaditana|type=polypeptide|length=539bp
MSFLLTSRRKPLLLLVLAVLAKAKAFQSGSVGKYHSKKHLSTRVFSSTTI
HDMVERIQQGQISVAEVTKQTLLQIEAEDRAIGAFLTLSGDQAMSEARAL
DEKLAGREPGTSTMPLLGLPMAIKDNICTAGIPTTAGSKVLQGYVPSYDA
TAVARLRAAGAVLVGKTNLDEFGMGSTTESSGYHVTRNPRDLSRSPGGSS
GGSAAAVASGMVLAALGTDTGGSIRQPASWTGTVGLKPTYGRVSRHGLLA
YGSSTDVIGPLTGTVMDSARLLSALAGADPLHDATTSLAPAAEDYVSAVK
EAETRGERPLAGTRIGLIRETLQTRVEDGVSTVVQDAVARLEGLGAEIME
VSIPYLDAHCASYYVNVLSEASANLARYDGVRYGLRPRDAGSAKTVMLGS
RGEGFGEEVKQRILLGTFSLSAGYADAYYLKSQQLRSVLSEAFKSAFETA
DVLISPTAPTVAYPLGKAAGSKVDMYADDLFTVPASLAGLPAISLPVGKA
PSSSASSDFLPVGLQIIGQRFAEASILQVARILELTSTD

mRNA from alignment at CM002463.1:543719..546320+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4413 ID=rna4413|Name=rna4413|organism=Nannochloropsis gaditana|type=mRNA|length=2602bp|location=Sequence derived from alignment at CM002463.1:543719..546320+ (Nannochloropsis gaditana)
CGCCTTGTGAAGGCCGAAATCAGGGGATGCAAATGGGGGTGGGATGGCAC
CTGGTATGCTCCCGGCGGGAGCCTGAAGTCCCGTGGGCTCGTCCGCGGAT
TTGCTTTCTGTAAAGGCACGACTGCTTGTCTTGCACCCTGAAGGTATGAT
CGGCTTCTGAGGGTGTCTCAAACATGGCGGTGCTTGACAGGCCTTGGCGC
GTGCATTTTCCCCGAGTGGCGGCATTCTCGGTTTATGTTTCGCTGCACCA
CGTGCGTGtcaaaaaaaaaaggaaaaatcaGCCTCAAAATGTCCGTTATT
ATGACCAAAGTGGTGTCCCCAAAACAATCAGCCTCCACGATGCATGTGTA
CCCACACCGCGACTCGCAGCGTACTGCAACATGTGGGCTCTTACACGTTT
TCGGGGGGTGTCAAGGGGTACGGCGTAGCGTCTGAAAGCGAGTCGTCCAG
CGAGCCTGAGGGCGATCGGCAGCCACGCCCGAAGGCAACTAACTCCATGA
GCCCGCTCGATCGGACGAAATCAAAAACGCCTACCCGACAACGGTCTTGA
GGAATTCCTTGGTTTTATGCTGTACTGGCCAGCACATATTTGCCGTTCGC
GATCATGGCCTGGAGCAAGTCTTTGGATGCCTGCAGGCTTGGCCACCACA
GCAACCGACGACAGACTCTCGGAGGAAAGCCCTTGACCTCCCGGCCTCCT
GGACTGCACAATTATACATAAGTCTTGTGAGGATGCCTGTTAGAGCCAGC
ACAACGTAATGACAACGCTCACTTTTATCGATCCGATATACTTTTCGACA
CAGGGGGTTGCAGCCATCGTGTTTCCCGGCTTTTCTGAAGCTCCTGTTGA
CGGCCCTTCAGGCACCGCAGTGCAAGCATGTCATTTCTCCTTACCAGCCG
TCGAAAGCCACTGCtactcctcgtccttgctgTGCTGGCCAAAGCGAAAG
CATTTCAGTCCGGATCAGTTGGAAAATATCATTCGAAAAAGCACTTGTCC
ACCCGAGTattctcctccacgaccatCCATGACATGGTAGAACGCATCCA
ACAAGGTCAGATCAGCGTGGCGGAGGTCACCAAACAAACGTTATTGCAAA
TCGAAGCGGAAGACAGAGCGATCGGTGCCTTTTTGACACTCAGTGGGGAT
CAAGCCATGTCCGAAGCCCGTGCACTGGACGAAAAGCTGGCGGGCAGGGA
GCCGGGCACGAGCACGATGCCGCTTTTGGGCTTACCTATGGCAATCAAGG
ACAACATTTGCACTGCAGGGATACCCACTACAGCTGGTTCTAAAGTCCTG
CAAGGCTATGTCCCCTCGTACGATGCTACAGCCGTCGCTCGCCTTCGGGC
CGCTGGCGCCGTGCTGGTCGGCAAGACCAACCTCGACGAGTTCGGCATGG
GGTCCACCACGGAGTCCTCCGGATATCATGTCACCCGAAATCCACGAGAT
CTCTCTCGGAGCCCGGGAGGGTCGTCCGGCGGCTCTGCAGCGGCCGTGGC
GAGTGGCATGGTCCTGGCAGCCTTGGGCACAGACACGGGAGGATCCATTC
GGCAGCCGGCGTCCTGGACGGGTACGGTTGGTTTGAAGCCCACCTACGGG
CGAGTCTCTAGGCACGGATTGCTGGCGTACGGCTCCAGCACAGACGTGAT
AGGGCCGCTGACTGGGACTGTGATGGATTCGGCGCGACTGCTCTCCGCCC
TGGCCGGCGCAGATCCCTTGCACGATGCCACGACCAGTCTGGCGCCCGCC
GCGGAGGATTACGTGAGTGCCGTGAAAGAGGCTGAGACCCGGGGCGAGAG
GCCCCTGGCGGGCACGAGGATAGGTTTGATCAGGGAGACGCTCCAGACAA
GGGTGGAAGACGGCGTGTCCACTGTCGTTCAGGACGCGGTGGCGCGGttg
gagggcctgggggcGGAGATTATGGAGGTATCGATCCCATACCTGGATGC
ACACTGCGCCTCCTACTACGTGAACGTGCTGTCGGAGGCGAGCGCCAACC
TGGCTAGGTACGACGGGGTCCGATACGGGCTTCGACCCCGGGATGCGGGA
AGTGCCAAGACGGTGATGCTGGGAAGTCGAGGAGAGGGATTTGGTGAGGA
GGTGAAGCAGAGGATCTTGCTTGGCACCTTCTCATTAAGCGCTGGGTACG
CAGATGCCTACTATCTTAAGAGTCAGCAGTTGCGCTCTGTCTTGTCGGAG
GCCTTTAAGAGTGCTTTCGAGACGGCGGACGTCTTAATCAGCCCAACAGC
TCCTACGGTGGCATACCCCTTGGGTAAGGCTGCGGGAAGTAAAGTAGACA
TGTACGCCGACGATTTGTTCACCGTTCCTGCTAGCTTGGCCGGATTACCT
GCGATCAGTCTACCTGTTGGGAaagcgccttcttcttctgcgtCTTCCGA
CTTCCTGCCAGTAGGTCTACAGATCATTGGACAAAGATTCGCGGAGGCCA
GCATTCTACAAGTAGCTCGCATTTTGGAGTTGACATCCACAGATTAAAAA
AGTAAAACGGCTCGTAGCGCCATGTCAAAGTCGCAGCAATCACAGATATT
GCCGGTTGACACGGCTATGATTgtaaaagaaaaaaagcacATTTCTATGA
AG

Coding sequence (CDS) from alignment at CM002463.1:543719..546320+

>rna4413 ID=rna4413|Name=rna4413|organism=Nannochloropsis gaditana|type=CDS|length=1620bp|location=Sequence derived from alignment at CM002463.1:543719..546320+ (Nannochloropsis gaditana)
ATGTCATTTCTCCTTACCAGCCGTCGAAAGCCACTGCtactcctcgtcct
tgctgTGCTGGCCAAAGCGAAAGCATTTCAGTCCGGATCAGTTGGAAAAT
ATCATTCGAAAAAGCACTTGTCCACCCGAGTattctcctccacgaccatC
CATGACATGGTAGAACGCATCCAACAAGGTCAGATCAGCGTGGCGGAGGT
CACCAAACAAACGTTATTGCAAATCGAAGCGGAAGACAGAGCGATCGGTG
CCTTTTTGACACTCAGTGGGGATCAAGCCATGTCCGAAGCCCGTGCACTG
GACGAAAAGCTGGCGGGCAGGGAGCCGGGCACGAGCACGATGCCGCTTTT
GGGCTTACCTATGGCAATCAAGGACAACATTTGCACTGCAGGGATACCCA
CTACAGCTGGTTCTAAAGTCCTGCAAGGCTATGTCCCCTCGTACGATGCT
ACAGCCGTCGCTCGCCTTCGGGCCGCTGGCGCCGTGCTGGTCGGCAAGAC
CAACCTCGACGAGTTCGGCATGGGGTCCACCACGGAGTCCTCCGGATATC
ATGTCACCCGAAATCCACGAGATCTCTCTCGGAGCCCGGGAGGGTCGTCC
GGCGGCTCTGCAGCGGCCGTGGCGAGTGGCATGGTCCTGGCAGCCTTGGG
CACAGACACGGGAGGATCCATTCGGCAGCCGGCGTCCTGGACGGGTACGG
TTGGTTTGAAGCCCACCTACGGGCGAGTCTCTAGGCACGGATTGCTGGCG
TACGGCTCCAGCACAGACGTGATAGGGCCGCTGACTGGGACTGTGATGGA
TTCGGCGCGACTGCTCTCCGCCCTGGCCGGCGCAGATCCCTTGCACGATG
CCACGACCAGTCTGGCGCCCGCCGCGGAGGATTACGTGAGTGCCGTGAAA
GAGGCTGAGACCCGGGGCGAGAGGCCCCTGGCGGGCACGAGGATAGGTTT
GATCAGGGAGACGCTCCAGACAAGGGTGGAAGACGGCGTGTCCACTGTCG
TTCAGGACGCGGTGGCGCGGttggagggcctgggggcGGAGATTATGGAG
GTATCGATCCCATACCTGGATGCACACTGCGCCTCCTACTACGTGAACGT
GCTGTCGGAGGCGAGCGCCAACCTGGCTAGGTACGACGGGGTCCGATACG
GGCTTCGACCCCGGGATGCGGGAAGTGCCAAGACGGTGATGCTGGGAAGT
CGAGGAGAGGGATTTGGTGAGGAGGTGAAGCAGAGGATCTTGCTTGGCAC
CTTCTCATTAAGCGCTGGGTACGCAGATGCCTACTATCTTAAGAGTCAGC
AGTTGCGCTCTGTCTTGTCGGAGGCCTTTAAGAGTGCTTTCGAGACGGCG
GACGTCTTAATCAGCCCAACAGCTCCTACGGTGGCATACCCCTTGGGTAA
GGCTGCGGGAAGTAAAGTAGACATGTACGCCGACGATTTGTTCACCGTTC
CTGCTAGCTTGGCCGGATTACCTGCGATCAGTCTACCTGTTGGGAaagcg
ccttcttcttctgcgtCTTCCGACTTCCTGCCAGTAGGTCTACAGATCAT
TGGACAAAGATTCGCGGAGGCCAGCATTCTACAAGTAGCTCGCATTTTGG
AGTTGACATCCACAGATTAA

Synonyms

Publications