rna4410, rna4410 (mRNA) Nannochloropsis gaditana

Overview
Namerna4410
Unique Namerna4410
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length664
Alignment locationCM002463.1:536606..538114 -

Link to JBrowse

Properties
Property NameValue
Productproliferating cell nuclear antigen
Orig transcript idgnl|cribi|Naga_100145g17.9680.mrna
Orig protein idgnl|cribi|Naga_100145g17.9680
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:536606..538114 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100145g17gene4254Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26272.1cds4400Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4410rna4410-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4410 ID=rna4410|Name=rna4410|organism=Nannochloropsis gaditana|type=mRNA|length=664bp
AGAGAGGACAGGGACACGCATTCTGTGCGATGACGCAAGGTCTTTATTTC
ATGGTTTACAGGGAGACAGAGGCACGAGGACCCGCCCAGCCGCACGCTAT
CATGGCCGCAACCCTGGAAAAACTGAAAGACCGTGTCATTTGTGTCATAA
CTAACGATGGGCGCAACATTGTCGGAGTTCTGAAGGGTTTCGATCAAACC
ACCAACATAATTTTGCAAGAATGCCACGAACGAGTGTTCTCAACAACGGC
GGGGGTAGAACAAGTTCCATTGGGTTTGTACATCGTGCGGGGGGATAATA
TTGCTGTGGTTGGAGAAATGGACGAGGAGGCGGATGCCGCACTTGACCTT
TCTTCTTTGAAAGGAGACCACTTGAAGCCTGTTATCCACTAGTAGAAGAC
GAACATAGTGAGATCTTTCGCCTTTTCATGTCTTTGCGTATGTATGTGTC
TTGATGTACAATAAGCTCTATTTTAAATGTAAAGATAAATGGACGATTTT
CTGTGTGGGTACAGATAAAGGAAACAAAAAAATGTGAGAGGTGAGGGAAG
TTGGCAGGCCTCTCCCAGCAGGAGACGCAAGTGTTTCTTTGATCAAGACC
CTGATTCAGATGGATAAAGATGTAGAAGATGAAAAACAAGATCATAGAGT
AAACGCCATGACCT
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protein sequence of rna4410

>rna4410-protein ID=rna4410-protein|Name=rna4410|organism=Nannochloropsis gaditana|type=polypeptide|length=259bp
MFEARLTEGSLLKKIIEAIKDLVQEANVDCSEEGLTMQAMDASHVSLCSL
NMRHGGFDHYRCDRSISLGLNLANLGKILKCAGNDDVVTLKAEDEPDTLT
LMFESPNQERISDFELKLMDIETEHLGIPNEEYKCTISMPSGEFQRIVRD
LAVIGETCIITCTKEGVKFSVSGDLGNGNVTVRQSSAADGDEKDQVKIQM
EEPVTLNFALRYLGFFTKATPLGSTVKLHMSPDVPIVVEYPIDGIGSISY
FLAPKIDED
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mRNA from alignment at CM002463.1:536606..538114-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4410 ID=rna4410|Name=rna4410|organism=Nannochloropsis gaditana|type=mRNA|length=1509bp|location=Sequence derived from alignment at CM002463.1:536606..538114- (Nannochloropsis gaditana)
CGGGGTGCATGACAATCGAGAAGTGGGTGATTTGCTGTCTTCTCCGTTTG
CTGTCGGGTACAATCAGACGAAGCATAATGTGTGTGCTTGTCTCTAATCG
CAAATTGCTTCATTTGTGAGCTCCTAGAGGGACGTAGTACGCCTAGGCTG
CTTGCTGTCAGTCTCGTTCTCCGCGCCAAAGTTTGAGTAGAAGGATCTGC
AAAAGGTGCCCTTTGTACCATCGCTACCTGTATATGGGATATTCAGGCCA
TTGTGAACGGCTATCAGGTGTAGAGCACTTCCTAAGTCAGCACTGCCATC
CCATCGAGTACATTTAACCCGTGCACTCGCTTTTCCTTGCTCGCACGGTA
CTCATCTGTTCTTCATTCTGTGTTTCAGACTGACAACTACATAAAGTCTA
GGAAAACATGTTTGAAGCTCGGCTAACGGAGGGAAGCCTTCTCAAGAAGA
TTATCGAGGCCATCAAGGATCTGGTCCAGGAAGCAAATGTTGACTGCTCG
GAAGAGGGGCTTACCATGCAGGCCATGGACGCTTCCCACGTCTCCCTCTG
CTCGTTGAATATGCGACACGGTGGCTTCGACCACTATCGATGCGACCGCT
CTATCTCTCTGGGCCTGAACCTGGCCAACCTGGGCAAGATCTTGAAATGC
GCAGGCAACGACGATGTGGTTACCCTCAAGGCTGAGGACGAGCCGGACAC
CTTGACGCTCATGTTTGAGTCGCCGAACCAGGAGCGCATTTCGGACTTCG
AGCTAAAGCTGATGGACATTGAAACGGAGCACCTAGGCATTCCCAACGAG
GAGTACAAGTGCACGATCAGCATGCCCTCCGGGGAGTTCCAACGCATCGT
GCGGGACTTAGCCGTCATCGGCGAGACCTGCATCATCACTTGCACGAAAG
AAGGGGTCAAGTTCTCCGTCTCGGGCGACCTGGGCAATGGAAATGTGACG
GTCCGACAGTCCTCGGCAGCGGACGGGGACGAGAAGGACCAGGTGAAGAT
CCAGATGGAGGAGCCAGTGACCCTAAACTTCGCGCTCCGGTACCTGGGGT
TCTTCACCAAGGCCACGCCCCTCGGATCCACGGTCAAGCTCCACATGTCG
CCCGACGTGCCCATCGTAGTGGAGTACCCCATAGACGGCATCGGCTCCAT
CTCCTATTTCTTGGCGCCCAAGATCGACGAGGACTAAGCGGGTCGAATGT
GGGCCCTGGGTGGGGAAAAGACCTCCAGTGAACGAGGGTCCAGGCCCAGG
AGTAAAGGATAGGGCAACAAGGTGGTCTCTGGGGCAGCAACAAGGAGACC
CGCGGACCCAAACCTCAAAGAGAGGAGAAGATATGGGGGGGCCTCCCAAA
GAATCATAAATAGAAAGCATCGAAACCTCCCATGCGAGCGTCTGGCAGGT
CATGGCGTTTACTCTATGATCTTGTTTTTCATCTTCTACATCTTTATCCA
TCTGAATCAGGGTCTTGATCAAAGAAACACTTGCGTCTCCTGCTGGGAGA
GGCCTGCCA
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Coding sequence (CDS) from alignment at CM002463.1:536606..538114-

>rna4410 ID=rna4410|Name=rna4410|organism=Nannochloropsis gaditana|type=CDS|length=780bp|location=Sequence derived from alignment at CM002463.1:536606..538114- (Nannochloropsis gaditana)
ATGTTTGAAGCTCGGCTAACGGAGGGAAGCCTTCTCAAGAAGATTATCGA
GGCCATCAAGGATCTGGTCCAGGAAGCAAATGTTGACTGCTCGGAAGAGG
GGCTTACCATGCAGGCCATGGACGCTTCCCACGTCTCCCTCTGCTCGTTG
AATATGCGACACGGTGGCTTCGACCACTATCGATGCGACCGCTCTATCTC
TCTGGGCCTGAACCTGGCCAACCTGGGCAAGATCTTGAAATGCGCAGGCA
ACGACGATGTGGTTACCCTCAAGGCTGAGGACGAGCCGGACACCTTGACG
CTCATGTTTGAGTCGCCGAACCAGGAGCGCATTTCGGACTTCGAGCTAAA
GCTGATGGACATTGAAACGGAGCACCTAGGCATTCCCAACGAGGAGTACA
AGTGCACGATCAGCATGCCCTCCGGGGAGTTCCAACGCATCGTGCGGGAC
TTAGCCGTCATCGGCGAGACCTGCATCATCACTTGCACGAAAGAAGGGGT
CAAGTTCTCCGTCTCGGGCGACCTGGGCAATGGAAATGTGACGGTCCGAC
AGTCCTCGGCAGCGGACGGGGACGAGAAGGACCAGGTGAAGATCCAGATG
GAGGAGCCAGTGACCCTAAACTTCGCGCTCCGGTACCTGGGGTTCTTCAC
CAAGGCCACGCCCCTCGGATCCACGGTCAAGCTCCACATGTCGCCCGACG
TGCCCATCGTAGTGGAGTACCCCATAGACGGCATCGGCTCCATCTCCTAT
TTCTTGGCGCCCAAGATCGACGAGGACTAA
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Synonyms
Publications