EWM26272.1, cds4400 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26272.1 vs. NCBI_GenBank
Match: gi|585108272|gb|EWM26272.1| (proliferating cell nuclear antigen [Nannochloropsis gaditana]) HSP 1 Score: 532.717 bits (1371), Expect = 0.000e+0 Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 0 Query: 1 MFEARLTEGSLLKKIIEAIKDLVQEANVDCSEEGLTMQAMDASHVSLCSLNMRHGGFDHYRCDRSISLGLNLANLGKILKCAGNDDVVTLKAEDEPDTLTLMFESPNQERISDFELKLMDIETEHLGIPNEEYKCTISMPSGEFQRIVRDLAVIGETCIITCTKEGVKFSVSGDLGNGNVTVRQSSAADGDEKDQVKIQMEEPVTLNFALRYLGFFTKATPLGSTVKLHMSPDVPIVVEYPIDGIGSISYFLAPKIDED 259 MFEARLTEGSLLKKIIEAIKDLVQEANVDCSEEGLTMQAMDASHVSLCSLNMRHGGFDHYRCDRSISLGLNLANLGKILKCAGNDDVVTLKAEDEPDTLTLMFESPNQERISDFELKLMDIETEHLGIPNEEYKCTISMPSGEFQRIVRDLAVIGETCIITCTKEGVKFSVSGDLGNGNVTVRQSSAADGDEKDQVKIQMEEPVTLNFALRYLGFFTKATPLGSTVKLHMSPDVPIVVEYPIDGIGSISYFLAPKIDED Sbjct: 1 MFEARLTEGSLLKKIIEAIKDLVQEANVDCSEEGLTMQAMDASHVSLCSLNMRHGGFDHYRCDRSISLGLNLANLGKILKCAGNDDVVTLKAEDEPDTLTLMFESPNQERISDFELKLMDIETEHLGIPNEEYKCTISMPSGEFQRIVRDLAVIGETCIITCTKEGVKFSVSGDLGNGNVTVRQSSAADGDEKDQVKIQMEEPVTLNFALRYLGFFTKATPLGSTVKLHMSPDVPIVVEYPIDGIGSISYFLAPKIDED 259
BLAST of EWM26272.1 vs. NCBI_GenBank
Match: gi|223996962|ref|XP_002288154.1| (pcna-like protein [Thalassiosira pseudonana CCMP1335] >gi|220975262|gb|EED93590.1| pcna-like protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 394.045 bits (1011), Expect = 1.444e-136 Identity = 184/259 (71.04%), Postives = 224/259 (86.49%), Query Frame = 0 Query: 1 MFEARLTEGSLLKKIIEAIKDLVQEANVDCSEEGLTMQAMDASHVSLCSLNMRHGGFDHYRCDRSISLGLNLANLGKILKCAGNDDVVTLKAEDEPDTLTLMFESPNQERISDFELKLMDIETEHLGIPNEEYKCTISMPSGEFQRIVRDLAVIGETCIITCTKEGVKFSVSGDLGNGNVTVRQSSAADGDEKDQVKIQMEEPVTLNFALRYLGFFTKATPLGSTVKLHMSPDVPIVVEYPIDGIGSISYFLAPKIDED 259 MFEARLT+G + K++IEA+KDLVQEAN+DC+++ +++QAMD SHVSL ++++R GGFDH+RCDR ISLG N AN+GKILKCAGNDDV+TL+AEDE D+L L+FESP Q+RI+DFELKLMDI+ E LGIP+ EYKCTI MPS EFQRI+RDL V+G+TC I+CTKEGVKFSVSGDLG+GNV VRQ+SAA+ DE ++V I+M+EPV L FALRYL FFTKAT LG TV L MSP+VP+VVEYPI G I Y+LAPKIDED Sbjct: 1 MFEARLTQGKVFKQLIEALKDLVQEANIDCTDDEISIQAMDNSHVSLVAVSLRSGGFDHFRCDRPISLGFNAANMGKILKCAGNDDVITLRAEDEGDSLALVFESPGQDRIADFELKLMDIDNEQLGIPDTEYKCTIQMPSAEFQRIIRDLQVLGDTCTISCTKEGVKFSVSGDLGSGNVLVRQNSAAEKDE-EKVMIEMDEPVELTFALRYLNFFTKATSLGPTVILSMSPEVPVVVEYPIGETGHIKYYLAPKIDED 258
BLAST of EWM26272.1 vs. NCBI_GenBank
Match: gi|298710433|emb|CBJ25497.1| (pcna-like protein [Ectocarpus siliculosus]) HSP 1 Score: 378.252 bits (970), Expect = 2.484e-130 Identity = 174/258 (67.44%), Postives = 210/258 (81.40%), Query Frame = 0 Query: 1 MFEARLTEGSLLKKIIEAIKDLVQEANVDCSEEGLTMQAMDASHVSLCSLNMRHGGFDHYRCDRSISLGLNLANLGKILKCAGNDDVVTLKAEDEPDTLTLMFESPNQERISDFELKLMDIETEHLGIPNEEYKCTISMPSGEFQRIVRDLAVIGETCIITCTKEGVKFSVSGDLGNGNVTVRQSSAADGDEKDQVKIQMEEPVTLNFALRYLGFFTKATPLGSTVKLHMSPDVPIVVEYPIDGIGSISYFLAPKIDE 258 M+EARL + SLLKKIIEA+++LV +AN+DCSE G++MQAMD+SHVSLC+L +R GF HYRCDRS+SLGL+ ++ KILKCAGNDD VTLKAED D LT+MFESP Q+RISDFELKLMDI++EHLGIP EY C I MPS EF RI+RDL VIG+TC I C K+GV FSVSGD+G GN+ VR +++ D +E D+V + MEEPVTL FALRYL F KATPLG TV + M+PD P+VVEYPID G + Y+LAPKIDE Sbjct: 1 MYEARLLQASLLKKIIEAVRELVTDANLDCSESGISMQAMDSSHVSLCALMIRSDGFQHYRCDRSLSLGLSTGSISKILKCAGNDDTVTLKAEDTADALTIMFESPKQDRISDFELKLMDIDSEHLGIPKTEYNCIIQMPSAEFARIMRDLQVIGDTCTIACDKDGVNFSVSGDMGKGNIMVRNNTSVDKEE-DKVTVTMEEPVTLKFALRYLSLFAKATPLGPTVTISMTPDNPVVVEYPIDTFGYVRYYLAPKIDE 257
BLAST of EWM26272.1 vs. NCBI_GenBank
Match: gi|551645575|ref|XP_005825576.1| (proliferating cell nuclear antigen [Guillardia theta CCMP2712] >gi|428169664|gb|EKX38596.1| proliferating cell nuclear antigen [Guillardia theta CCMP2712]) HSP 1 Score: 367.081 bits (941), Expect = 6.393e-126 Identity = 170/258 (65.89%), Postives = 214/258 (82.95%), Query Frame = 0 Query: 1 MFEARLTEGSLLKKIIEAIKDLVQEANVDCSEEGLTMQAMDASHVSLCSLNMRHGGFDHYRCDRSISLGLNLANLGKILKCAGNDDVVTLKAEDEPDTLTLMFESPNQERISDFELKLMDIETEHLGIPNEEYKCTISMPSGEFQRIVRDLAVIGETCIITCTKEGVKFSVSGDLGNGNVTVRQSSAADGDEKDQVKIQMEEPVTLNFALRYLGFFTKATPLGSTVKLHMSPDVPIVVEYPIDGIGSISYFLAPKIDE 258 MFEARL +GSLLKK+IEAI++LV +AN D S G+++QAMD SHVSL SL +R GF+H+RCDRS+SLGLNLA++ K+LKCA NDD +TLKAED+ DTLTLMFESPNQ+RISDFE+KLMDI++EHLGIP+ EYK T+ M + EFQRI+RDL+ IG+T I+CTKE VKFSV GD+G GNV +R ++A D +++ + I++EEPV+L FALRYL FTKATPL STV L MSPDVP+V EY + +G+I +FLAPKIDE Sbjct: 1 MFEARLAQGSLLKKLIEAIRELVTDANFDVSTSGVSLQAMDTSHVSLVSLLLREDGFEHFRCDRSLSLGLNLASITKMLKCANNDDAITLKAEDQGDTLTLMFESPNQDRISDFEIKLMDIDSEHLGIPDTEYKATVKMSAAEFQRIMRDLSTIGDTVSISCTKEAVKFSVEGDIGQGNVIMRHNAAVDKEDEATI-IELEEPVSLTFALRYLNLFTKATPLSSTVTLSMSPDVPLVTEYKVGDMGNIRFFLAPKIDE 257
BLAST of EWM26272.1 vs. NCBI_GenBank
Match: gi|635576661|pdb|4CS5|A (Chain A, Crystal Structure Of Pcna From Litopenaeus Vannamei >gi|635576662|pdb|4CS5|B Chain B, Crystal Structure Of Pcna From Litopenaeus Vannamei >gi|635576663|pdb|4CS5|C Chain C, Crystal Structure Of Pcna From Litopenaeus Vannamei) HSP 1 Score: 352.058 bits (902), Expect = 4.793e-120 Identity = 162/260 (62.31%), Postives = 206/260 (79.23%), Query Frame = 0 Query: 1 MFEARLTEGSLLKKIIEAIKDLVQEANVDCSEEGLTMQAMDASHVSLCSLNMRHGGFDHYRCDRSISLGLNLANLGKILKCAGNDDVVTLKAEDEPDTLTLMFESPNQERISDFELKLMDIETEHLGIPNEEYKCTISMPSGEFQRIVRDLAVIGETCIITCTKEGVKFSVSGDLGNGNVTVRQSSAADGDEKDQVKIQMEEPVTLNFALRYLGFFTKATPLGSTVKLHMSPDVPIVVEYPIDGIGSISYFLAPKI-DED 259 MFEARL +GSLLKK++EAIKDL+ EA+ DC++ G+ +QAMD SHVSL SLN+R GFD YRCDR++ +G+NL ++ KILKCA NDD++T+KA+D DT+T MFESPNQE++SD+E+KLM+++ EHLGIP +Y C I +PSGEF RI RDL+ GE+ +I CTKEGVKFS +GD+G N+ + Q+S+ D +E + V I+M+EPVTL FA RYL FTKATPL V L MSPDVP+VVEY I IG I YFLAPKI DED Sbjct: 1 MFEARLVQGSLLKKVLEAIKDLLNEASWDCADSGIQLQAMDNSHVSLVSLNLRAKGFDKYRCDRNLIMGMNLTSMSKILKCAANDDIITMKAQDNADTVTFMFESPNQEKVSDYEMKLMNLDQEHLGIPETDYACVIKLPSGEFARICRDLSQFGESIVIACTKEGVKFSAAGDIGTANIKLAQTSSVDKEE-EAVVIEMQEPVTLTFACRYLNMFTKATPLSPQVSLSMSPDVPLVVEYAIGEIGHIRYFLAPKIEDED 259
BLAST of EWM26272.1 vs. NCBI_GenBank
Match: gi|339721487|gb|AEJ89927.1| (proliferating cell nuclear antigen [Litopenaeus vannamei] >gi|339721489|gb|AEJ89928.1| proliferating cell nuclear antigen [Litopenaeus vannamei]) HSP 1 Score: 351.673 bits (901), Expect = 7.843e-120 Identity = 162/260 (62.31%), Postives = 206/260 (79.23%), Query Frame = 0 Query: 1 MFEARLTEGSLLKKIIEAIKDLVQEANVDCSEEGLTMQAMDASHVSLCSLNMRHGGFDHYRCDRSISLGLNLANLGKILKCAGNDDVVTLKAEDEPDTLTLMFESPNQERISDFELKLMDIETEHLGIPNEEYKCTISMPSGEFQRIVRDLAVIGETCIITCTKEGVKFSVSGDLGNGNVTVRQSSAADGDEKDQVKIQMEEPVTLNFALRYLGFFTKATPLGSTVKLHMSPDVPIVVEYPIDGIGSISYFLAPKI-DED 259 MFEARL +GSLLKK++EAIKDL+ EA+ DC++ G+ +QAMD SHVSL SLN+R GFD YRCDR++ +G+NL ++ KILKCA NDD++T+KA+D DT+T MFESPNQE++SD+E+KLM+++ EHLGIP +Y C I +PSGEF RI RDL+ GE+ +I CTKEGVKFS +GD+G N+ + Q+S+ D +E + V I+M+EPVTL FA RYL FTKATPL V L MSPDVP+VVEY I IG I YFLAPKI DED Sbjct: 1 MFEARLVQGSLLKKVLEAIKDLLNEASWDCADSGIQLQAMDNSHVSLVSLNLRAEGFDKYRCDRNLIMGMNLTSMSKILKCAANDDIITMKAQDNADTVTFMFESPNQEKVSDYEMKLMNLDQEHLGIPETDYACVIKLPSGEFARICRDLSQFGESIVIACTKEGVKFSAAGDIGTANIKLAQTSSVDKEE-EAVVIEMQEPVTLTFACRYLNMFTKATPLSPQVSLSMSPDVPLVVEYAIGEIGHIRYFLAPKIEDED 259
BLAST of EWM26272.1 vs. NCBI_GenBank
Match: gi|1071348436|gb|AOS87743.1| (proliferating cell nuclear antigen [Penaeus monodon]) HSP 1 Score: 351.673 bits (901), Expect = 8.468e-120 Identity = 162/260 (62.31%), Postives = 206/260 (79.23%), Query Frame = 0 Query: 1 MFEARLTEGSLLKKIIEAIKDLVQEANVDCSEEGLTMQAMDASHVSLCSLNMRHGGFDHYRCDRSISLGLNLANLGKILKCAGNDDVVTLKAEDEPDTLTLMFESPNQERISDFELKLMDIETEHLGIPNEEYKCTISMPSGEFQRIVRDLAVIGETCIITCTKEGVKFSVSGDLGNGNVTVRQSSAADGDEKDQVKIQMEEPVTLNFALRYLGFFTKATPLGSTVKLHMSPDVPIVVEYPIDGIGSISYFLAPKI-DED 259 MFEARL +GSLLKK++EAIKDL+ EA+ DC++ G+ +QAMD SHVSL SLN+R GFD YRCDR++ +G+NL ++ KILKCA NDD++T+KA+D DT+T MFESPNQE++SD+E+KLM+++ EHLGIP +Y C I +PSGEF RI RDL+ GE+ +I CTKEGVKFS +GD+G N+ + Q+S+ D +E + V I+M+EPVTL FA RYL FTKATPL V L MSPDVP+VVEY I IG I YFLAPKI DED Sbjct: 1 MFEARLVQGSLLKKVLEAIKDLLNEASWDCADSGIQLQAMDNSHVSLVSLNLRAEGFDKYRCDRNLIMGMNLTSMSKILKCAANDDIITMKAQDNADTVTFMFESPNQEKVSDYEMKLMNLDQEHLGIPETDYACVIKLPSGEFARICRDLSQFGESIVIACTKEGVKFSAAGDIGTANIKLAQTSSVDKEE-EAVVIEMQEPVTLTFACRYLNMFTKATPLSPQVSLSMSPDVPLVVEYSIGEIGHIRYFLAPKIEDED 259
BLAST of EWM26272.1 vs. NCBI_GenBank
Match: gi|167888835|gb|ACA09718.1| (proliferating cell nuclear antigen [Marsupenaeus japonicus]) HSP 1 Score: 350.517 bits (898), Expect = 2.475e-119 Identity = 161/260 (61.92%), Postives = 205/260 (78.85%), Query Frame = 0 Query: 1 MFEARLTEGSLLKKIIEAIKDLVQEANVDCSEEGLTMQAMDASHVSLCSLNMRHGGFDHYRCDRSISLGLNLANLGKILKCAGNDDVVTLKAEDEPDTLTLMFESPNQERISDFELKLMDIETEHLGIPNEEYKCTISMPSGEFQRIVRDLAVIGETCIITCTKEGVKFSVSGDLGNGNVTVRQSSAADGDEKDQVKIQMEEPVTLNFALRYLGFFTKATPLGSTVKLHMSPDVPIVVEYPIDGIGSISYFLAPKI-DED 259 MFEARL +GSLLKK++EAIKDL+ EA+ DC++ G+ +QAMD SHVSL SLN+R GFD YRCDR++ +G+NL ++ KILKCA NDD++T+KA+D DT+T MFESPNQE++SD+E+KLM+++ EHLGIP +Y C I +PSGEF RI RDL+ GE+ +I CTKEGVKFS +GD+G N+ + Q+S+ D +E + V I+M+EPVT FA RYL FTKATPL V L MSPDVP+VVEY I IG I YFLAPKI DED Sbjct: 1 MFEARLVQGSLLKKVLEAIKDLLNEASWDCADSGIQLQAMDNSHVSLVSLNLRAEGFDKYRCDRNLIMGMNLTSMSKILKCAANDDIITMKAQDNADTVTFMFESPNQEKVSDYEMKLMNLDQEHLGIPETDYACVIKLPSGEFARICRDLSQFGESIVIACTKEGVKFSAAGDIGTANIKLAQTSSVDKEE-EAVVIEMQEPVTFTFACRYLNMFTKATPLSPQVSLSMSPDVPLVVEYAIGEIGHIRYFLAPKIEDED 259
BLAST of EWM26272.1 vs. NCBI_GenBank
Match: gi|122831052|gb|ABM66815.1| (proliferating cell nuclear antigen [Fenneropenaeus chinensis]) HSP 1 Score: 349.362 bits (895), Expect = 5.564e-119 Identity = 161/260 (61.92%), Postives = 205/260 (78.85%), Query Frame = 0 Query: 1 MFEARLTEGSLLKKIIEAIKDLVQEANVDCSEEGLTMQAMDASHVSLCSLNMRHGGFDHYRCDRSISLGLNLANLGKILKCAGNDDVVTLKAEDEPDTLTLMFESPNQERISDFELKLMDIETEHLGIPNEEYKCTISMPSGEFQRIVRDLAVIGETCIITCTKEGVKFSVSGDLGNGNVTVRQSSAADGDEKDQVKIQMEEPVTLNFALRYLGFFTKATPLGSTVKLHMSPDVPIVVEYPIDGIGSISYFLAPKI-DED 259 MFEARL +G LLKK++EAIKDL+ EA+ DC++ G+ +QAMD SHVSL SLN+R GFD YRCDR++ +G+NL ++ KILKCA NDD++T+KA+D DT+T MFESPNQE++SD+E+KLM+++ EHLGIP +Y C I +PSGEF RI RDL+ GE+ +I CTKEGVKFS +GD+G N+ + Q+S+ D +E + V I+M+EPVTL FA RYL FTKATPL V L MSPDVP+VVEY I IG I YFLAPKI DED Sbjct: 1 MFEARLVQGGLLKKVLEAIKDLLNEASWDCADSGIQLQAMDNSHVSLVSLNLRAEGFDKYRCDRNLIMGMNLTSMSKILKCAANDDIITMKAQDNADTVTFMFESPNQEKVSDYEMKLMNLDQEHLGIPETDYACVIKLPSGEFARICRDLSQFGESIVIACTKEGVKFSAAGDIGTANIKLAQTSSVDKEE-EAVVIEMQEPVTLTFACRYLNMFTKATPLSPQVSLSMSPDVPLVVEYSIGEIGHIRYFLAPKIEDED 259
BLAST of EWM26272.1 vs. NCBI_GenBank
Match: gi|926623424|ref|XP_013777130.1| (PREDICTED: proliferating cell nuclear antigen-like [Limulus polyphemus]) HSP 1 Score: 348.977 bits (894), Expect = 7.827e-119 Identity = 157/258 (60.85%), Postives = 209/258 (81.01%), Query Frame = 0 Query: 1 MFEARLTEGSLLKKIIEAIKDLVQEANVDCSEEGLTMQAMDASHVSLCSLNMRHGGFDHYRCDRSISLGLNLANLGKILKCAGNDDVVTLKAEDEPDTLTLMFESPNQERISDFELKLMDIETEHLGIPNEEYKCTISMPSGEFQRIVRDLAVIGETCIITCTKEGVKFSVSGDLGNGNVTVRQSSAADGDEKDQVKIQMEEPVTLNFALRYLGFFTKATPLGSTVKLHMSPDVPIVVEYPIDGIGSISYFLAPKIDE 258 MFEARL +GSLLKK++EAIKDL+ EA DCS G+++QAMD SHVSL S+N+R GFD YRCDR+IS+G+NL ++ KILKCA NDD++T+KA+DE D++T +FE+PNQE++SD+E+KLM+++TEHLGIP+ EY I MPS EFQRI RDL+ IG++ II+CTKEGV+FS SGDLG GN+ + Q++ D +E + V I+M+E V+L FALRYL FTKATPL + V+L MS DVP+ VEY I +G + Y+LAPKI++ Sbjct: 1 MFEARLVQGSLLKKVLEAIKDLINEATWDCSATGISLQAMDNSHVSLVSVNLRSDGFDKYRCDRNISMGMNLGSMSKILKCAANDDIITVKAQDEADSVTFVFEAPNQEKVSDYEMKLMNLDTEHLGIPDTEYSVVIKMPSVEFQRICRDLSQIGDSVIISCTKEGVQFSASGDLGTGNIKLSQTANVDKEE-EAVVIEMQEAVSLTFALRYLNSFTKATPLAAQVQLSMSADVPLAVEYKIADMGYMKYYLAPKIED 257 The following BLAST results are available for this feature:
BLAST of EWM26272.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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