rna4401, rna4401 (mRNA) Nannochloropsis gaditana

Overview
Namerna4401
Unique Namerna4401
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1513
Alignment locationCM002463.1:497621..498684 -

Link to JBrowse

Properties
Property NameValue
Productcax-interacting protein 4
Orig transcript idgnl|cribi|Naga_100073g9.10388.mrna
Orig protein idgnl|cribi|Naga_100073g9.10388
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:497621..498684 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100073g9gene4245Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4401rna4401-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26280.1cds4391Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4401 ID=rna4401|Name=rna4401|organism=Nannochloropsis gaditana|type=mRNA|length=1513bp
GTTCTCACACCTTTTCGTGCGTAACGTGCTTTTTGTTTGCTTGTGAAGAT
ACCTTATAGCATTTTTCTTGTCCAACTGAGACGACACTTTTCATGCAACA
GTAGCGTCATCCATGTCCCGTATCGATCATGGATTGTACCTCTTGTGCCA
TGGAATGATGCAAGGAACATGATAAAAGCCGTGACGCTACGTCACTCTCT
GTCAAACCTTCTGATTTCTTTGCTGTGAGAACAACTCGGAAAATGTCATT
GTAGAGAAAATGATGAGCAGATATCTTCGTACTTAATGCCTTGTGTGTGT
CAGTGCTATCTTCTTCATGCGCTAGCGCATCACATGTCTGCTCGGAGATG
TGTTCACCGAGGCGAATCCCTCCACAACCCACAGAGCAAAGTAAGAACCA
CAAAATCAAGTCTTTCGCGATGTTCAAGTGGTTACTCGTCGTAGTTGCAG
TACTGCTAGGCGTAGGATCTAAGTATGCCAAGCGGAAATTGCCCCTCGTT
CCCGTGGACCTAGATGGAAAGCATTTCATTGTAACGGGGGCCAGCGCGGG
AATCGGAAAAGAAACAGTGCGCACCCTGGCAGAGTGGAATGCTTCGGTAG
TTATGGCTGTTCGAAATGTAAAAAAGGGAACTGCGGTCCTGGAAGACATC
CGTCTATCTATCGGGCGGCAGGACCTGCCGGTGGAAGTCTGGGAGATGGA
CCTGTCAAAGCTTTCGTCGGTCAAGGATTTCGCTGACAGATACCGGGATT
CCGGTCGTCCTTTGCATGTGCTCATCAATAATGCGGGCTTGGTCTCGTGG
GAGTACATATTGACAGAAGACGGTCACGAGCTTACATATCAGACGAACCA
TTTGGGCCACTTTTTGCTGACCAAGCTGTTGATGCCTTCCTTGCTGGCTT
CAGCGCCTTCACGCGTCATTCAAGTGTCTTCCGACGCGCACTTCATGGGA
AAAATAGATCTAGACCACTTGGACTCCTCAAACGACACTTATAATAGTAT
GTCTACGTACGCACATACCAAGCTTATGAACGTGGTGTATGCCAATGAGC
TAACGCGCCGCTTTAAGGACGTTGGAGTTGTCTCGACCTCTCTGCATCCA
GGATTCGTTGCCACGGAGTTCTTGCGGGACTTACCTGAGTGGGCACAACC
GATTAAGAATGCAATGTGCTCGCTCTTTGCCCGAAATGAGGTTGAGGGGG
CGAAAACACAAATTATGGCAGCCACTGCTCCGGCATATGAAGGGGTGGGA
GGCGTGTACTTTGATGCATGTGCTCCTCGAGTCCCCAACAAGCTGGTTTT
GGACGAACATTTAGCGGCTGCATTTTGGGATAAATCCGAGGAAGCGATCC
AACACATGCTCGTCGAACCCTCAGAAGACATGTCCACAGAAGTTGCTGAG
GAATGAGTTCAGAGGCGAAGATGTGGTATGTGGCGTCTGTAACTCTGCAC
CGTTTTAGAGTGCTGCAAAGAAGTACCATGATACGCCAAGATTGCATCGT
AGACGTGCTCTGT
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protein sequence of rna4401

>rna4401-protein ID=rna4401-protein|Name=rna4401|organism=Nannochloropsis gaditana|type=polypeptide|length=215bp
MPASAGRVKMPHNNRMSSSAALGTSNMWKNVIKYDPYANDEDAAAEAAAA
ELAAEQQRGLMDVVRIKARETLGTESKRGACRKCGNMGHLTYQCRNHLGG
NNRAADSESESSDEDSVESAEEVVEARAAAAAAMTSRGDGNGSRKRKQES
SSGGSSDSEESEGSSEAEERRERRREREGRRSASVKKRKKESKKRHKKEK
MHKKEKKRKKKHSHR
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mRNA from alignment at CM002463.1:497621..498684-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4401 ID=rna4401|Name=rna4401|organism=Nannochloropsis gaditana|type=mRNA|length=1064bp|location=Sequence derived from alignment at CM002463.1:497621..498684- (Nannochloropsis gaditana)
ATGCCAGCTTCCGCGGGCCGTGTGGTAAGTCTGCAGCATGCCGTGCATAC
CTTTTCCCACCAGTACACACACAGTCTAATAGGCTCTACCCTGCCTCCGG
TTGCGGCCGTCACAGAAAATGCCACACAACAATCGGATGTCCAGTTCGGC
TGCGCTGGGGACAAGCAACATGTGGAAAAATGTGATCAAGTACGACCCTT
ACGCGAACGATGAAGGTAAGGTCTCCCAGGGTCTCCTTCTCCACGCTTGC
TCCTCAATAAGACTGAGCATTCTATTATCCACCGTGATACGACCCACTCA
TTAGATGCTGCTGCGGAAGCGGCCGCCGCCGAGCTCGCGGCGGAGCAGCA
GCGGGGCTTAATGGACGTCGTACGGATCAAGGCGCGGGAGACGCTGGGCA
CGGAGAGCAAACGTGGCGCTTGTAGAAAATGCGGCAACATGGGGCACCTC
ACGTATCAGTGTCGGAACCATTTGGGAGGAAACAACCGTGCCGCAGACTC
GGAGAGTGAGAGCAGTGACGAGGATAGTGTGGAAAGCGCCGAGGAAGTCG
TGGAGGCAAGGGCGGCAGCAGCGGCAGCGATGACTAGCAGGGGGGATGGG
AATGGGTCCCGGAAGCGCAAGCAAGAGAGCAGCAGTGGTGGCTCCAGTGA
CAGCGAGGAAAGCGAGGGCAGCAGTGAAGCGGAAGAGAGGCGGGAGCGGA
GACGAGAGCGGGAAGGCCGAAGGAGCGCTAGCGTGAAGAAGCGGAAGAAG
GAGAGCAAGAAGAGGCATAAAAAGGAGAAGATGCATAAAAAGGTACGCTG
TTCTGACAATGATCGGGATAGGGTTCTTCGAATTATTGTCTGGCGCTCGC
GAGATTATCCCTGACTGTTCGAGACGATTAATTTTTGTCTCAAACCTTGC
GGACCTTTTAACTCGCCTTGCCCGATTCCATCTACGAAATTTTCCCACAG
GAGAAAAAGCGCAAAAAGAAGCATTCGCATAGATAGCCACGTAACTCTAT
CAAATAGTAATGTGTCCAGCGCATCGCTAGGCAAGCACTCGTAATGAAGA
AAAGTCTCCCTGTA
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Coding sequence (CDS) from alignment at CM002463.1:497621..498684-

>rna4401 ID=rna4401|Name=rna4401|organism=Nannochloropsis gaditana|type=CDS|length=2592bp|location=Sequence derived from alignment at CM002463.1:497621..498684- (Nannochloropsis gaditana)
GAGAAAAAGCGCAAAAAGAAGCATTCGCATAGATAGATGCTGCTGCGGAA
GCGGCCGCCGCCGAGCTCGCGGCGGAGCAGCAGCGGGGCTTAATGGACGT
CGTACGGATCAAGGCGCGGGAGACGCTGGGCACGGAGAGCAAACGTGGCG
CTTGTAGAAAATGCGGCAACATGGGGCACCTCACGTATCAGTGTCGGAAC
CATTTGGGAGGAAACAACCGTGCCGCAGACTCGGAGAGTGAGAGCAGTGA
CGAGGATAGTGTGGAAAGCGCCGAGGAAGTCGTGGAGGCAAGGGCGGCAG
CAGCGGCAGCGATGACTAGCAGGGGGGATGGGAATGGGTCCCGGAAGCGC
AAGCAAGAGAGCAGCAGTGGTGGCTCCAGTGACAGCGAGGAAAGCGAGGG
CAGCAGTGAAGCGGAAGAGAGGCGGGAGCGGAGACGAGAGCGGGAAGGCC
GAAGGAGCGCTAGCGTGAAGAAGCGGAAGAAGGAGAGCAAGAAGAGGCAT
AAAAAGGAGAAGATGCATAAAAAGAAAATGCCACACAACAATCGGATGTC
CAGTTCGGCTGCGCTGGGGACAAGCAACATGTGGAAAAATGTGATCAAGT
ACGACCCTTACGCGAACGATGAAGATGCCAGCTTCCGCGGGCCGTGTGGA
GAAAAAGCGCAAAAAGAAGCATTCGCATAGATAGATGCTGCTGCGGAAGC
GGCCGCCGCCGAGCTCGCGGCGGAGCAGCAGCGGGGCTTAATGGACGTCG
TACGGATCAAGGCGCGGGAGACGCTGGGCACGGAGAGCAAACGTGGCGCT
TGTAGAAAATGCGGCAACATGGGGCACCTCACGTATCAGTGTCGGAACCA
TTTGGGAGGAAACAACCGTGCCGCAGACTCGGAGAGTGAGAGCAGTGACG
AGGATAGTGTGGAAAGCGCCGAGGAAGTCGTGGAGGCAAGGGCGGCAGCA
GCGGCAGCGATGACTAGCAGGGGGGATGGGAATGGGTCCCGGAAGCGCAA
GCAAGAGAGCAGCAGTGGTGGCTCCAGTGACAGCGAGGAAAGCGAGGGCA
GCAGTGAAGCGGAAGAGAGGCGGGAGCGGAGACGAGAGCGGGAAGGCCGA
AGGAGCGCTAGCGTGAAGAAGCGGAAGAAGGAGAGCAAGAAGAGGCATAA
AAAGGAGAAGATGCATAAAAAGAAAATGCCACACAACAATCGGATGTCCA
GTTCGGCTGCGCTGGGGACAAGCAACATGTGGAAAAATGTGATCAAGTAC
GACCCTTACGCGAACGATGAAGATGCCAGCTTCCGCGGGCCGTGTGGAGA
AAAAGCGCAAAAAGAAGCATTCGCATAGATAGATGCTGCTGCGGAAGCGG
CCGCCGCCGAGCTCGCGGCGGAGCAGCAGCGGGGCTTAATGGACGTCGTA
CGGATCAAGGCGCGGGAGACGCTGGGCACGGAGAGCAAACGTGGCGCTTG
TAGAAAATGCGGCAACATGGGGCACCTCACGTATCAGTGTCGGAACCATT
TGGGAGGAAACAACCGTGCCGCAGACTCGGAGAGTGAGAGCAGTGACGAG
GATAGTGTGGAAAGCGCCGAGGAAGTCGTGGAGGCAAGGGCGGCAGCAGC
GGCAGCGATGACTAGCAGGGGGGATGGGAATGGGTCCCGGAAGCGCAAGC
AAGAGAGCAGCAGTGGTGGCTCCAGTGACAGCGAGGAAAGCGAGGGCAGC
AGTGAAGCGGAAGAGAGGCGGGAGCGGAGACGAGAGCGGGAAGGCCGAAG
GAGCGCTAGCGTGAAGAAGCGGAAGAAGGAGAGCAAGAAGAGGCATAAAA
AGGAGAAGATGCATAAAAAGAAAATGCCACACAACAATCGGATGTCCAGT
TCGGCTGCGCTGGGGACAAGCAACATGTGGAAAAATGTGATCAAGTACGA
CCCTTACGCGAACGATGAAGATGCCAGCTTCCGCGGGCCGTGTGGAGAAA
AAGCGCAAAAAGAAGCATTCGCATAGATAGATGCTGCTGCGGAAGCGGCC
GCCGCCGAGCTCGCGGCGGAGCAGCAGCGGGGCTTAATGGACGTCGTACG
GATCAAGGCGCGGGAGACGCTGGGCACGGAGAGCAAACGTGGCGCTTGTA
GAAAATGCGGCAACATGGGGCACCTCACGTATCAGTGTCGGAACCATTTG
GGAGGAAACAACCGTGCCGCAGACTCGGAGAGTGAGAGCAGTGACGAGGA
TAGTGTGGAAAGCGCCGAGGAAGTCGTGGAGGCAAGGGCGGCAGCAGCGG
CAGCGATGACTAGCAGGGGGGATGGGAATGGGTCCCGGAAGCGCAAGCAA
GAGAGCAGCAGTGGTGGCTCCAGTGACAGCGAGGAAAGCGAGGGCAGCAG
TGAAGCGGAAGAGAGGCGGGAGCGGAGACGAGAGCGGGAAGGCCGAAGGA
GCGCTAGCGTGAAGAAGCGGAAGAAGGAGAGCAAGAAGAGGCATAAAAAG
GAGAAGATGCATAAAAAGAAAATGCCACACAACAATCGGATGTCCAGTTC
GGCTGCGCTGGGGACAAGCAACATGTGGAAAAATGTGATCAAGTACGACC
CTTACGCGAACGATGAAGATGCCAGCTTCCGCGGGCCGTGTG
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Synonyms
Publications