EWM26280.1, cds4391 (CDS) Nannochloropsis gaditana

Overview
NameEWM26280.1
Unique Namecds4391
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:498661..498684 -
Alignment locationCM002463.1:498470..498569 -
Alignment locationCM002463.1:497893..498380 -
Alignment locationCM002463.1:497699..497734 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26280.1
Productcax-interacting protein 4
Orig transcript idgnl|cribi|Naga_100073g9.10388.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:498661..498684 -
CM002463.1supercontigCM002463.1:498470..498569 -
CM002463.1supercontigCM002463.1:497893..498380 -
CM002463.1supercontigCM002463.1:497699..497734 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
Homology
BLAST of EWM26280.1 vs. NCBI_GenBank
Match: gi|585108281|gb|EWM26280.1| (cax-interacting protein 4 [Nannochloropsis gaditana])

HSP 1 Score: 426.017 bits (1094), Expect = 1.005e-150
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0
Query:    1 MPASAGRVKMPHNNRMSSSAALGTSNMWKNVIKYDPYANDEDAAAEAAAAELAAEQQRGLMDVVRIKARETLGTESKRGACRKCGNMGHLTYQCRNHLGGNNRAADSESESSDEDSVESAEEVVEARAAAAAAMTSRGDGNGSRKRKQESSSGGSSDSEESEGSSEAEERRERRREREGRRSASVKKRKKESKKRHKKEKMHKKEKKRKKKHSHR 215
            MPASAGRVKMPHNNRMSSSAALGTSNMWKNVIKYDPYANDEDAAAEAAAAELAAEQQRGLMDVVRIKARETLGTESKRGACRKCGNMGHLTYQCRNHLGGNNRAADSESESSDEDSVESAEEVVEARAAAAAAMTSRGDGNGSRKRKQESSSGGSSDSEESEGSSEAEERRERRREREGRRSASVKKRKKESKKRHKKEKMHKKEKKRKKKHSHR
Sbjct:    1 MPASAGRVKMPHNNRMSSSAALGTSNMWKNVIKYDPYANDEDAAAEAAAAELAAEQQRGLMDVVRIKARETLGTESKRGACRKCGNMGHLTYQCRNHLGGNNRAADSESESSDEDSVESAEEVVEARAAAAAAMTSRGDGNGSRKRKQESSSGGSSDSEESEGSSEAEERRERRREREGRRSASVKKRKKESKKRHKKEKMHKKEKKRKKKHSHR 215          
BLAST of EWM26280.1 vs. NCBI_GenBank
Match: gi|635368629|emb|CCI43189.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 117.087 bits (292), Expect = 4.337e-29
Identity = 50/98 (51.02%), Postives = 67/98 (68.37%), Query Frame = 0
Query:    1 MPASAGRVKMPHNNRMSSSAALGTSNMWKNVIKYDPYANDEDAAAEAAAAELAAEQQRGLMDVVRIKARETLGTESKRGACRKCGNMGHLTYQCRNHL 98
            MP++ GR++MPHNNRM SS  L  + MWKN I YDPYA  ++   +   +ELA +Q +GLM + ++  + T      RGAC+KCG +GHLTYQCRNHL
Sbjct:    1 MPSTTGRMRMPHNNRMHSSLTLKMTGMWKNTIGYDPYAASDEGVQD---SELAQDQAKGLMALAKLSNQNT----QSRGACKKCGMIGHLTYQCRNHL 91          
BLAST of EWM26280.1 vs. NCBI_GenBank
Match: gi|567993142|gb|ETL43325.1| (hypothetical protein L916_06133 [Phytophthora parasitica])

HSP 1 Score: 117.857 bits (294), Expect = 9.114e-29
Identity = 53/100 (53.00%), Postives = 70/100 (70.00%), Query Frame = 0
Query:    1 MPASAGRVKMPHNNRMSSSAALGTSNMWKNVIKYDPYANDEDAAAEAAAAELAAEQQRGLMDVVRIKARETLGTESKRGACRKCGNMGHLTYQCRNHLGG 100
            MPA+AGRV+MPHNNRM SSA L  + +WKN I YDPYA + +   E   +E + EQ +GLM + ++  +    +   RGAC+KCG +GHLT+QCRNHLGG
Sbjct:    1 MPATAGRVRMPHNNRMHSSATLKMTGIWKNTIGYDPYAAEGEKQGE--TSETSYEQAKGLMALAKLSNK----SNDVRGACKKCGMVGHLTFQCRNHLGG 94          
BLAST of EWM26280.1 vs. NCBI_GenBank
Match: gi|570989562|gb|ETP47765.1| (hypothetical protein F442_06364 [Phytophthora parasitica P10297])

HSP 1 Score: 115.931 bits (289), Expect = 4.985e-28
Identity = 52/100 (52.00%), Postives = 69/100 (69.00%), Query Frame = 0
Query:    1 MPASAGRVKMPHNNRMSSSAALGTSNMWKNVIKYDPYANDEDAAAEAAAAELAAEQQRGLMDVVRIKARETLGTESKRGACRKCGNMGHLTYQCRNHLGG 100
            MPA+AGRV+MPHNNRM SSA L  + +W N I YDPYA + +   E   +E + EQ +GLM + ++  +    +   RGAC+KCG +GHLT+QCRNHLGG
Sbjct:    1 MPATAGRVRMPHNNRMHSSATLKMTGIWTNTIGYDPYAAEGEKQGE--TSETSYEQAKGLMALAKLSNK----SNDVRGACKKCGMVGHLTFQCRNHLGG 94          
BLAST of EWM26280.1 vs. NCBI_GenBank
Match: gi|299470100|emb|CBN78129.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 114.39 bits (285), Expect = 2.561e-27
Identity = 51/98 (52.04%), Postives = 69/98 (70.41%), Query Frame = 0
Query:    1 MPASAGRVKMPHNNRMSSSAALGTSNMWKNVIKYDPYANDEDAAAEAAAAELAAEQQRGLMDVVRIKARETLGTESKRGACRKCGNMGHLTYQCRNHL 98
            MPA+AGRV+MPH NR+SSS+AL  + +W N I YDPYA  E   A+A     A EQ +GLM + ++  +   G   +RGAC+KCG++GHLT+QCRNH+
Sbjct:    1 MPATAGRVRMPHGNRVSSSSALKMTGIWTNTIGYDPYAA-EGGGADAEDEANAFEQAQGLMALAKLSNQ---GVTEQRGACKKCGSVGHLTFQCRNHI 94          
BLAST of EWM26280.1 vs. NCBI_GenBank
Match: gi|695063202|ref|XP_009420098.1| (PREDICTED: CAX-interacting protein 4-like [Musa acuminata subsp. malaccensis])

HSP 1 Score: 109.768 bits (273), Expect = 3.447e-25
Identity = 57/128 (44.53%), Postives = 82/128 (64.06%), Query Frame = 0
Query:    1 MPASAGRVKMPHNNRMSSSAALGTSNMWKNVIKYDPYAN-DEDAAAEAA-------AAELAAEQQRGLMDVVRIKARETLGTESKRGACRKCGNMGHLTYQCRNHLGGNNRAADSESESSDEDSVESA 120
            MPA+AGRV+MP NNR+ SSAAL T  +W++ I YDPYA  ++D+A E+A       AAE A    +GL+ + R+      G+   RG+CRKCG +GHLT+QCRN L   + A   + +  D D++++A
Sbjct:    1 MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPANKDSAKESALPGEDGSAAENAYASFQGLLALARVTGS---GSNEARGSCRKCGRVGHLTFQCRNFLSAKDSAVFDKDK--DADAIQAA 123          
BLAST of EWM26280.1 vs. NCBI_GenBank
Match: gi|953496876|emb|CEG41185.1| (cax-interacting protein 4 [Plasmopara halstedii])

HSP 1 Score: 108.227 bits (269), Expect = 4.535e-25
Identity = 45/98 (45.92%), Postives = 68/98 (69.39%), Query Frame = 0
Query:    1 MPASAGRVKMPHNNRMSSSAALGTSNMWKNVIKYDPYANDEDAAAEAAAAELAAEQQRGLMDVVRIKARETLGTESKRGACRKCGNMGHLTYQCRNHL 98
            MP +AGR++MPHNNRM SS+ L  + +WK+ I YDPYA +++   +   +E + EQ +GLM + ++  +    +   RGAC+KCG +GHLT+QCRN+L
Sbjct:    1 MPTTAGRMRMPHNNRMHSSSTLKMTGIWKDTIGYDPYAAEDE--KQIKTSETSYEQAKGLMALAKLSNK----SSDVRGACKKCGVVGHLTFQCRNYL 92          
BLAST of EWM26280.1 vs. NCBI_GenBank
Match: gi|635368630|emb|CCI43190.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 105.916 bits (263), Expect = 8.967e-25
Identity = 46/91 (50.55%), Postives = 61/91 (67.03%), Query Frame = 0
Query:    8 VKMPHNNRMSSSAALGTSNMWKNVIKYDPYANDEDAAAEAAAAELAAEQQRGLMDVVRIKARETLGTESKRGACRKCGNMGHLTYQCRNHL 98
            ++MPHNNRM SS  L  + MWKN I YDPYA  ++   ++   ELA +Q +GLM + ++  + T      RGAC+KCG +GHLTYQCRNHL
Sbjct:    1 MRMPHNNRMHSSLTLKMTGMWKNTIGYDPYAASDEGVQDS---ELAQDQAKGLMALAKLSNQNT----QSRGACKKCGMIGHLTYQCRNHL 84          
BLAST of EWM26280.1 vs. NCBI_GenBank
Match: gi|635368631|emb|CCI43191.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 104.76 bits (260), Expect = 1.707e-24
Identity = 46/89 (51.69%), Postives = 59/89 (66.29%), Query Frame = 0
Query:   10 MPHNNRMSSSAALGTSNMWKNVIKYDPYANDEDAAAEAAAAELAAEQQRGLMDVVRIKARETLGTESKRGACRKCGNMGHLTYQCRNHL 98
            MPHNNRM SS  L  + MWKN I YDPYA  ++   ++   ELA +Q +GLM + ++  + T      RGAC+KCG +GHLTYQCRNHL
Sbjct:    1 MPHNNRMHSSLTLKMTGMWKNTIGYDPYAASDEGVQDS---ELAQDQAKGLMALAKLSNQNT----QSRGACKKCGMIGHLTYQCRNHL 82          
BLAST of EWM26280.1 vs. NCBI_GenBank
Match: gi|302772156|ref|XP_002969496.1| (hypothetical protein SELMODRAFT_440732 [Selaginella moellendorffii] >gi|300162972|gb|EFJ29584.1| hypothetical protein SELMODRAFT_440732 [Selaginella moellendorffii])

HSP 1 Score: 105.916 bits (263), Expect = 3.342e-24
Identity = 48/104 (46.15%), Postives = 68/104 (65.38%), Query Frame = 0
Query:    1 MPASAGRVKMPHNNRMSSSAALGTSNMWKNVIKYDPYANDE------DAAAEAAAAELAAEQQRGLMDVVRIKARETLGTESKRGACRKCGNMGHLTYQCRNHL 98
            MPA+AGRV+MP NNR+ SSAAL T  +W++ I YDPYA D       + AA   A E A +  +GL+ + +I++ +   ++  RGACR+C  +GHL +QCRN L
Sbjct:    1 MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPDRKDPSGGERAAPVPAGENAYDSFQGLLALAKIQSGQVSSSDEPRGACRRCKRVGHLPFQCRNFL 104          
The following BLAST results are available for this feature:
BLAST of EWM26280.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108281|gb|EWM26280.1|1.005e-150100.00cax-interacting protein 4 [Nannochloropsis gaditan... [more]
gi|635368629|emb|CCI43189.1|4.337e-2951.02unnamed protein product [Albugo candida][more]
gi|567993142|gb|ETL43325.1|9.114e-2953.00hypothetical protein L916_06133 [Phytophthora para... [more]
gi|570989562|gb|ETP47765.1|4.985e-2852.00hypothetical protein F442_06364 [Phytophthora para... [more]
gi|299470100|emb|CBN78129.1|2.561e-2752.04conserved unknown protein [Ectocarpus siliculosus][more]
gi|695063202|ref|XP_009420098.1|3.447e-2544.53PREDICTED: CAX-interacting protein 4-like [Musa ac... [more]
gi|953496876|emb|CEG41185.1|4.535e-2545.92cax-interacting protein 4 [Plasmopara halstedii][more]
gi|635368630|emb|CCI43190.1|8.967e-2550.55unnamed protein product [Albugo candida][more]
gi|635368631|emb|CCI43191.1|1.707e-2451.69unnamed protein product [Albugo candida][more]
gi|302772156|ref|XP_002969496.1|3.342e-2446.15hypothetical protein SELMODRAFT_440732 [Selaginell... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4401rna4401Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications