rna4400, rna4400 (mRNA) Nannochloropsis gaditana

Overview
Namerna4400
Unique Namerna4400
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1440
Alignment locationCM002463.1:495657..497297 -

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Properties
Property NameValue
Productretinol dehydrogenase 13
Orig transcript idgnl|cribi|Naga_100073g10.10394.mrna
Orig protein idgnl|cribi|Naga_100073g10.10394
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:495657..497297 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100073g10gene4244Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4400rna4400-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26286.1cds4390Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4400 ID=rna4400|Name=rna4400|organism=Nannochloropsis gaditana|type=mRNA|length=1440bp
GAAGAGATGGCAAGCTTGGTAGCAGGCTCGGATTGCGTAGTCCAAATTTT
AAATTTAGCACTGGGCCTTAACTGACAACAACGGCCGAGCTGAAGCTCAA
CGGAAGACAACTGTCGGTATGGGCTTGCGCCTCAGAAAGACTTGCCTGCG
CCAAACCTTATTATGCCTGTATACCCGTATAAATTGCTTGTTTTGCAAGC
CTTTGAATAATTGGAATTTTTCGGTGTTGATTGTTTCGGCTACAGGTCAA
ACGGCCTGTTAGGGTTACTCCGAGCGGAATGGAATTGTCCTTGCAAGGGT
CCCGTCGTGCATTCATTACGGGAGCAGGAAGCGGCATCGGTGCTGGTATA
GCCTCTTCATTAGCTCTTGAACATGGATGGGAAGTGATAGCAACAGACGT
TAATTTGGAGGCGGCGCAAGGCACAGCCGCGCAGATAAAGGCCAAAGATG
GTAAAGCGGAAGCCTATGCGCTGAATGTGGCTGACAATACCCAAATAGTC
TCACTCATTGAGCAGCTAAAAAGAGAAGGAAAAAATGTCGATGTTCTGAT
AAATAATGCAGGTTTGCAGCACGTGGCGCGTCTCGAAGACTTTCCTGCTG
AGAAATGGGGATTCATGATCCAAGTCATGTTGACTGGTGTGGCTGATCTC
ACAAGGGCAATCTTACCAATGATGCATGAACAAGGATTCGGACGTATTGT
TAACATTGGTTCTATCCATAGCGTTATCGCATCCCCCTTCAAATCCGCGT
ACGTGGCTGCAAAGCACGGTCTCATCGGATTCTCCAAGGTAATAGCCTTG
GAGACCAGCGACGTAGATATTACCATCAACACCATTTGTCCATCCTATGT
GAAGACTCCTCTGGTAGATGCTCAAATCGCAAATCAGGCGAAGACACACG
GTATCAGCGAGGATGAGGTAATCAACAAAATTATGCTCGAGCCCATGCCC
AAAAAGGCCTTCATTTCCATTCAAGAACTGGTTGGCACTACTCTTTTTTT
GACATCCGATGCCGCGAGGAACATGACGGGCCAGACGCTAGTACTTGACG
GCGGCTGGACGGTACGTTGATATACCGCACATACGCGTGCTGGTAAGAAA
TTACACTGACACATAAAAGTTACAGATGGGCTTGCCTGCTTGACAAATTA
TAAATATGATACGTACACATATAAAGGCTGAAACGGTCAGTAGCAACGAC
AAGCTTGGCAAGTTGTAAAAATTTTCTTTTCGCATTATCATAAACTTACG
GCTGCAGCTTAATCACAAGCAATTTTTGAGTCGAATGAGCTGAGAGCAAC
TCCGAAAGCTTGCAACGGAGTGAACGGCCAACGAACATCCATCGTGAATT
CGTGTTTGTCCACCCTCCCGAACTGAAGTAAAACTGTCTCATGATCTTTC
GGTGCAACAAGTTGGAAATTCTTGACTGAGGCCATTGTGA
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protein sequence of rna4400

>rna4400-protein ID=rna4400-protein|Name=rna4400|organism=Nannochloropsis gaditana|type=polypeptide|length=352bp
MCSPRRIPPQPTEQSKNHKIKSFAMFKWLLVVVAVLLGVGSKYAKRKLPL
VPVDLDGKHFIVTGASAGIGKETVRTLAEWNASVVMAVRNVKKGTAVLED
IRLSIGRQDLPVEVWEMDLSKLSSVKDFADRYRDSGRPLHVLINNAGLVS
WEYILTEDGHELTYQTNHLGHFLLTKLLMPSLLASAPSRVIQVSSDAHFM
GKIDLDHLDSSNDTYNSMSTYAHTKLMNVVYANELTRRFKDVGVVSTSLH
PGFVATEFLRDLPEWAQPIKNAMCSLFARNEVEGAKTQIMAATAPAYEGV
GGVYFDACAPRVPNKLVLDEHLAAAFWDKSEEAIQHMLVEPSEDMSTEVA
EE
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mRNA from alignment at CM002463.1:495657..497297-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4400 ID=rna4400|Name=rna4400|organism=Nannochloropsis gaditana|type=mRNA|length=1641bp|location=Sequence derived from alignment at CM002463.1:495657..497297- (Nannochloropsis gaditana)
GTTCTCACACCTTTTCGTGCGTAACGTGCTTTTTGTTTGCTTGTGAAGAT
ACCTTATAGCATTTTTCTTGTCCAACTGAGACGACACTTTTCATGCAACA
GTAGCGTCATCCATGTCCCGTATCGATCATGGATTGTACCTCTTGTGCCA
TGGAATGATGCAAGGAACATGATAAAAGCCGTGACGCTACGTCACTCTCT
GTCAAACCTTCTGATTTCTTTGCTGTGAGAACAACTCGGAAAATGTCATT
GTAGAGAAAATGATGAGCAGATATCTTCGTACTTAATGCCTTGTGTGTGT
CAGTGCTATCTTCTTCATGCGCTAGCGCATCACATGTCTGCTCGGAGATG
TGTTCACCGAGGCGAATCCCTCCACAACCCACAGAGCAAAGTAAGAACCA
CAAAATCAAGTCTTTCGCGATGTTCAAGTGGTTACTCGTCGTAGTTGCAG
TACTGCTAGGCGTAGGATCTAAGTATGCCAAGCGGAAATTGCCCCTCGTT
CCCGTGGACCTAGATGGAAAGCATTTCATTGTAACGGGGGCCAGCGCGGG
AATCGGAAAAGAAACAGTGCGCACCCTGGCAGAGTGGAATGCTTCGGTAG
TTATGGCTGTTCGAAATGTAAAAAAGGGAACTGCGGTCCTGGAAGACATC
CGTCTATCTATCGGGCGGCAGGACCTGCCGGTGGAAGTCTGGGAGATGGA
CCTGTCAAAGCTTTCGTCGGTCAAGGATTTCGCTGACAGATACCGGGATT
CCGGTCGTCCTTTGCATGTGCTCATCAATAATGCGGGCTTGGTCTCGTGG
GAGTACATATTGACAGAAGACGGTCACGAGCTTACATATCAGACGAACCA
TTTGGGCCACTTTTTGCTGACCAAGCTGTTGATGCCTTCCTTGCTGGCTT
CAGCGCCTTCACGCGTCATTCAAGTGTCTTCCGACGCGCACTTCATGGGA
AAAATAGATCTAGGTTAGTCAACTCGCGTATTGATGCGTCAGATAACTTA
ACTTTCACGATGCAGACGACGCTTTCCATTGTGACACAGACTTTTCAAAT
TGCGTTGCGACTCATGGTATCCGATCTCTTTGTTTCCACAGACCACTTGG
ACTCCTCAAACGACACTTATAATAGTATGTCTACGTACGCACATACCAAG
CTTATGAACGTGGTGTATGCCAATGAGCTAACGCGCCGCTTTAAGGACGT
TGGAGTTGTCTCGACCTCTCTGCATCCAGGATTCGTTGCCACGGAGTTCT
TGCGGGACTTACCTGAGTGGGCACAACCGATTAAGAATGCAATGTGCTCG
CTCTTTGCCCGAAATGAGGTTGAGGGGGCGAAAACACAAATTATGGCAGC
CACTGCTCCGGCATATGAAGGGGTGGGAGGCGTGTACTTTGATGCATGTG
CTCCTCGAGTCCCCAACAAGCTGGTTTTGGACGAACATTTAGCGGCTGCA
TTTTGGGATAAATCCGAGGAAGCGATCCAACACATGCTCGTCGAACCCTC
AGAAGACATGTCCACAGAAGTTGCTGAGGAATGAGTTCAGAGGCGAAGAT
GTGGTATGTGGCGTCTGTAACTCTGCACCGTTTTAGAGTGCTGCAAAGAA
GTACCATGATACGCCAAGATTGCATCGTAGACGTGCTCTGT
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Coding sequence (CDS) from alignment at CM002463.1:495657..497297-

>rna4400 ID=rna4400|Name=rna4400|organism=Nannochloropsis gaditana|type=CDS|length=2118bp|location=Sequence derived from alignment at CM002463.1:495657..497297- (Nannochloropsis gaditana)
ACCACTTGGACTCCTCAAACGACACTTATAATAGTATGTCTACGTACGCA
CATACCAAGCTTATGAACGTGGTGTATGCCAATGAGCTAACGCGCCGCTT
TAAGGACGTTGGAGTTGTCTCGACCTCTCTGCATCCAGGATTCGTTGCCA
CGGAGTTCTTGCGGGACTTACCTGAGTGGGCACAACCGATTAAGAATGCA
ATGTGCTCGCTCTTTGCCCGAAATGAGGTTGAGGGGGCGAAAACACAAAT
TATGGCAGCCACTGCTCCGGCATATGAAGGGGTGGGAGGCGTGTACTTTG
ATGCATGTGCTCCTCGAGTCCCCAACAAGCTGGTTTTGGACGAACATTTA
GCGGCTGCATTTTGGGATAAATCCGAGGAAGCGATCCAACACATGCTCGT
CGAACCCTCAGAAGACATGTCCACAGAAGTTGCTGAGGAATGAATGTGTT
CACCGAGGCGAATCCCTCCACAACCCACAGAGCAAAGTAAGAACCACAAA
ATCAAGTCTTTCGCGATGTTCAAGTGGTTACTCGTCGTAGTTGCAGTACT
GCTAGGCGTAGGATCTAAGTATGCCAAGCGGAAATTGCCCCTCGTTCCCG
TGGACCTAGATGGAAAGCATTTCATTGTAACGGGGGCCAGCGCGGGAATC
GGAAAAGAAACAGTGCGCACCCTGGCAGAGTGGAATGCTTCGGTAGTTAT
GGCTGTTCGAAATGTAAAAAAGGGAACTGCGGTCCTGGAAGACATCCGTC
TATCTATCGGGCGGCAGGACCTGCCGGTGGAAGTCTGGGAGATGGACCTG
TCAAAGCTTTCGTCGGTCAAGGATTTCGCTGACAGATACCGGGATTCCGG
TCGTCCTTTGCATGTGCTCATCAATAATGCGGGCTTGGTCTCGTGGGAGT
ACATATTGACAGAAGACGGTCACGAGCTTACATATCAGACGAACCATTTG
GGCCACTTTTTGCTGACCAAGCTGTTGATGCCTTCCTTGCTGGCTTCAGC
GCCTTCACGCGTCATTCAAGTGTCTTCCGACGCGCACTTCATGGGAAAAA
TAGATCTAGACCACTTGGACTCCTCAAACGACACTTATAATAGTATGTCT
ACGTACGCACATACCAAGCTTATGAACGTGGTGTATGCCAATGAGCTAAC
GCGCCGCTTTAAGGACGTTGGAGTTGTCTCGACCTCTCTGCATCCAGGAT
TCGTTGCCACGGAGTTCTTGCGGGACTTACCTGAGTGGGCACAACCGATT
AAGAATGCAATGTGCTCGCTCTTTGCCCGAAATGAGGTTGAGGGGGCGAA
AACACAAATTATGGCAGCCACTGCTCCGGCATATGAAGGGGTGGGAGGCG
TGTACTTTGATGCATGTGCTCCTCGAGTCCCCAACAAGCTGGTTTTGGAC
GAACATTTAGCGGCTGCATTTTGGGATAAATCCGAGGAAGCGATCCAACA
CATGCTCGTCGAACCCTCAGAAGACATGTCCACAGAAGTTGCTGAGGAAT
GAATGTGTTCACCGAGGCGAATCCCTCCACAACCCACAGAGCAAAGTAAG
AACCACAAAATCAAGTCTTTCGCGATGTTCAAGTGGTTACTCGTCGTAGT
TGCAGTACTGCTAGGCGTAGGATCTAAGTATGCCAAGCGGAAATTGCCCC
TCGTTCCCGTGGACCTAGATGGAAAGCATTTCATTGTAACGGGGGCCAGC
GCGGGAATCGGAAAAGAAACAGTGCGCACCCTGGCAGAGTGGAATGCTTC
GGTAGTTATGGCTGTTCGAAATGTAAAAAAGGGAACTGCGGTCCTGGAAG
ACATCCGTCTATCTATCGGGCGGCAGGACCTGCCGGTGGAAGTCTGGGAG
ATGGACCTGTCAAAGCTTTCGTCGGTCAAGGATTTCGCTGACAGATACCG
GGATTCCGGTCGTCCTTTGCATGTGCTCATCAATAATGCGGGCTTGGTCT
CGTGGGAGTACATATTGACAGAAGACGGTCACGAGCTTACATATCAGACG
AACCATTTGGGCCACTTTTTGCTGACCAAGCTGTTGATGCCTTCCTTGCT
GGCTTCAGCGCCTTCACGCGTCATTCAAGTGTCTTCCGACGCGCACTTCA
TGGGAAAAATAGATCTAG
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Synonyms
Publications