EWM26286.1, cds4390 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26286.1 vs. NCBI_GenBank
Match: gi|585108287|gb|EWM26286.1| (retinol dehydrogenase 13 [Nannochloropsis gaditana]) HSP 1 Score: 731.48 bits (1887), Expect = 0.000e+0 Identity = 352/352 (100.00%), Postives = 352/352 (100.00%), Query Frame = 0
Query: 1 MCSPRRIPPQPTEQSKNHKIKSFAMFKWLLVVVAVLLGVGSKYAKRKLPLVPVDLDGKHFIVTGASAGIGKETVRTLAEWNASVVMAVRNVKKGTAVLEDIRLSIGRQDLPVEVWEMDLSKLSSVKDFADRYRDSGRPLHVLINNAGLVSWEYILTEDGHELTYQTNHLGHFLLTKLLMPSLLASAPSRVIQVSSDAHFMGKIDLDHLDSSNDTYNSMSTYAHTKLMNVVYANELTRRFKDVGVVSTSLHPGFVATEFLRDLPEWAQPIKNAMCSLFARNEVEGAKTQIMAATAPAYEGVGGVYFDACAPRVPNKLVLDEHLAAAFWDKSEEAIQHMLVEPSEDMSTEVAEE 352
MCSPRRIPPQPTEQSKNHKIKSFAMFKWLLVVVAVLLGVGSKYAKRKLPLVPVDLDGKHFIVTGASAGIGKETVRTLAEWNASVVMAVRNVKKGTAVLEDIRLSIGRQDLPVEVWEMDLSKLSSVKDFADRYRDSGRPLHVLINNAGLVSWEYILTEDGHELTYQTNHLGHFLLTKLLMPSLLASAPSRVIQVSSDAHFMGKIDLDHLDSSNDTYNSMSTYAHTKLMNVVYANELTRRFKDVGVVSTSLHPGFVATEFLRDLPEWAQPIKNAMCSLFARNEVEGAKTQIMAATAPAYEGVGGVYFDACAPRVPNKLVLDEHLAAAFWDKSEEAIQHMLVEPSEDMSTEVAEE
Sbjct: 1 MCSPRRIPPQPTEQSKNHKIKSFAMFKWLLVVVAVLLGVGSKYAKRKLPLVPVDLDGKHFIVTGASAGIGKETVRTLAEWNASVVMAVRNVKKGTAVLEDIRLSIGRQDLPVEVWEMDLSKLSSVKDFADRYRDSGRPLHVLINNAGLVSWEYILTEDGHELTYQTNHLGHFLLTKLLMPSLLASAPSRVIQVSSDAHFMGKIDLDHLDSSNDTYNSMSTYAHTKLMNVVYANELTRRFKDVGVVSTSLHPGFVATEFLRDLPEWAQPIKNAMCSLFARNEVEGAKTQIMAATAPAYEGVGGVYFDACAPRVPNKLVLDEHLAAAFWDKSEEAIQHMLVEPSEDMSTEVAEE 352
BLAST of EWM26286.1 vs. NCBI_GenBank
Match: gi|927128457|ref|XP_013909057.1| (PREDICTED: retinol dehydrogenase 12 [Thamnophis sirtalis]) HSP 1 Score: 214.542 bits (545), Expect = 1.361e-63 Identity = 126/309 (40.78%), Postives = 176/309 (56.96%), Query Frame = 0
Query: 28 WLLVVVAVLLGVGSKYAKRKLP-LVPVDLDGKHFIVTGASAGIGKETVRTLAEWNASVVMAVRNVKKGTAVLEDIRLSIGRQDLPVEVWEMDLSKLSSVKDFADRYRDSGRPLHVLINNAGLVSWEYILTEDGHELTYQTNHLGHFLLTKLLMPSLLASAPSRVIQVSSDAHF-MGKIDLDHLDSSNDTYNSMSTYAHTKLMNVVYANELTRRFKDVGVVSTSLHPGFVATEFLRDLPEWAQPIKNAMCSLFARNEVEGAKTQIMAATAPAYEGVGGVYFDA-CAPRVPNKLVLDEHLAAAFWDKSEEA 333
W + +A+L + + K P PVDL GK IVTGAS+GIGK LA NA ++A R KKG A +E+IR + G V++ +D+S ++SV+DFA R+ + G LH+L+NNAG+ + +T +G ELT+ TN G FLLT LL+ +++ASAP+R++ VSS HF + K+DL L N+ Y TKLMNV++ EL RR + GV + L PG V TE LR A + +CS F N GA + + A AP EG+ G YFD+ C +P L + L WD E+A
Sbjct: 12 WFICSLALLALLWIRRRKSWSPDACPVDLSGKTAIVTGASSGIGKAVALDLARKNARTILACRCSKKGQAAVEEIRRATGNPH--VQLRLLDVSSMASVRDFARRFLEEGSQLHILVNNAGVTGLPFAVTTEGLELTFATNVSGAFLLTNLLLGTMVASAPARIVNVSSFRHFCVRKVDLKWLTGEELPKNASQAYDCTKLMNVLFTTELARRLQGTGVSANVLSPGIVRTEILRHYGR-ASRLLYWLCSPFMMNPQRGATSTLYCAVAPEVEGISGKYFDSNCRLVLPQTLAHEPGLGQRLWDALEKA 317
BLAST of EWM26286.1 vs. NCBI_GenBank
Match: gi|1002603059|ref|XP_015680690.1| (PREDICTED: retinol dehydrogenase 12 [Protobothrops mucrosquamatus]) HSP 1 Score: 214.542 bits (545), Expect = 1.521e-63 Identity = 119/285 (41.75%), Postives = 169/285 (59.30%), Query Frame = 0
Query: 51 VPVDLDGKHFIVTGASAGIGKETVRTLAEWNASVVMAVRNVKKGTAVLEDIRLSIGRQDLPVEVWEMDLSKLSSVKDFADRYRDSGRPLHVLINNAGLVSWEYILTEDGHELTYQTNHLGHFLLTKLLMPSLLASAPSRVIQVSSDAHF-MGKIDLDHLDSSNDTYNSMSTYAHTKLMNVVYANELTRRFKDVGVVSTSLHPGFVATEFLRDLPEWAQPIKNAMCSLFARNEVEGAKTQIMAATAPAYEGVGGVYFDA-CAPRVPNKLVLDEHLAAAFWDKSEEA 333
PVDL GK IVTGAS+GIGK LA NA ++A R KG A +E+IR + G V++ +D+S ++SV+DFA ++ + G LH+L+NNAG+ + +T +G ELT+ TN LG FLLT LL+ +++ASAP+R++ VSS HF + K+DL L N+ Y TKLMNV + +L +R + GV++ L PG V TE LR+ A + +CS F R+ +GA + + A AP EG+ G YFD+ C +P L D L WD E+A
Sbjct: 36 CPVDLSGKTAIVTGASSGIGKAVALDLARRNARTILACRCRDKGQAAVEEIRRATGNPQ--VQLRLLDISSMASVRDFARKFLEEGSQLHILVNNAGVTGLPFAITVEGLELTFATNVLGPFLLTNLLLGTMVASAPARIVNVSSFRHFCVRKVDLKWLTGEELPKNASHAYDCTKLMNVAFTIKLAQRLQGTGVLANVLSPGLVRTEILRNYGR-ASRLLYRLCSPFMRSPQKGATSTLYCAVAPEVEGISGKYFDSNCTLVLPQDLAQDPGLGKRLWDALEKA 317
BLAST of EWM26286.1 vs. NCBI_GenBank
Match: gi|1207928903|ref|XP_021353663.1| (retinol dehydrogenase 12-like [Mizuhopecten yessoensis] >gi|1205902362|gb|OWF50392.1| Retinol dehydrogenase 13 [Mizuhopecten yessoensis]) HSP 1 Score: 213.386 bits (542), Expect = 3.714e-63 Identity = 114/282 (40.43%), Postives = 165/282 (58.51%), Query Frame = 0
Query: 55 LDGKHFIVTGASAGIGKETVRTLAEWNASVVMAVRNVKKGTAVLEDIRLSIGRQDLPVEVWEMDLSKLSSVKDFADRYRDSGRPLHVLINNAGLVSWEYILTEDGHELTYQTNHLGHFLLTKLLMPSLLASAPSRVIQVSSDAHFMGKIDLDHLDSSNDTYNSMSTYAHTKLMNVVYANELTRRFKDVGVVSTSLHPGFVATEFLRDLPEWAQPI--KNAMCSLFARNEVEGAKTQIMAATAPAYEGVGGVYFDACAPRVPNKLVLDEHLAAAFWDKSEEAI 334
LDGK I+TG + GIG ET + L+ A VVMA R+VKK T E ++ G D V + +DL+ L SV+ FA+R + + +LINNAG++ +EDG+E+ + NHLGHFLLT LL+ + SAP+R+I VSS AH+ GKI+ D ++S D Y+SM+ YA +KL NV++ EL++R + GV + +LHPG V TE R + I + F + ++GA+T + A + V G YF CA + P+K L + A W SEE +
Sbjct: 48 LDGKTVIITGCNTGIGLETAKELSARGARVVMACRDVKKATEAAETVKTFSGNTD--VSIQRLDLASLESVRKFAERMNEKEERIDILINNAGVMMCPKWKSEDGYEMQFAVNHLGHFLLTNLLLDRMKKSAPARIINVSSSAHYRGKINFDDINSDKD-YSSMAAYAQSKLANVLFTKELSKRLQGTGVTTNALHPGVVNTELPRHVQARITIIFLLGPIIKPFLKTPLQGAQTNLHCALDENLDNVSGKYFSDCAEKGPSKAALVDEDAKRLWQLSEEMV 326
BLAST of EWM26286.1 vs. NCBI_GenBank
Match: gi|602666931|ref|XP_007439033.1| (PREDICTED: retinol dehydrogenase 12 [Python bivittatus]) HSP 1 Score: 213.772 bits (543), Expect = 7.616e-63 Identity = 116/312 (37.18%), Postives = 177/312 (56.73%), Query Frame = 0
Query: 28 WLLVVVAVLLGVGSKYAKRKL-----PLVPVDLDGKHFIVTGASAGIGKETVRTLAEWNASVVMAVRNVKKGTAVLEDIRLSIGRQDLPVEVWEMDLSKLSSVKDFADRYRDSGRPLHVLINNAGLVSWEYILTEDGHELTYQTNHLGHFLLTKLLMPSLLASAPSRVIQVSSDAHFMG-KIDLDHLDSSNDTYNSMSTYAHTKLMNVVYANELTRRFKDVGVVSTSLHPGFVATEFLRDLPEWAQPIKNAMCSLFARNEVEGAKTQIMAATAPAYEGVGGVYFDA-CAPRVPNKLVLDEHLAAAFWDKSEE 332
W + +A+L G +A+R+ PVDL GK IVTGAS+GIGK LA NA ++A R+ +KG A E+IR + G + + + +D+S ++SV+DFA ++ + + LH+L+NNAG+ + +T +G ELT+ TN G FLLT LL+ +++ASAP+R++ VSS H+ ++++ L N Y TKLMNV++ EL RR + GV + L PG V TE +R W + +CS+F RN EGA + + A A +G+ G YFD+ C +P L + + WD E+
Sbjct: 12 WFICSLALL---GMLWARRRRHTWRPEACPVDLSGKTAIVTGASSGIGKAVALDLARRNARTILACRSREKGQAAAEEIRRATGNPQVHLRL--LDVSSMASVRDFAGQFLEEEKQLHILVNNAGVTGLPFAITAEGLELTFATNVSGAFLLTNLLLGTMIASAPARIVNVSSFRHYCARRVNVKFLTGEEQPKNCSQAYDSTKLMNVIFTTELARRLQGTGVSANVLSPGIVKTEIMRHF-SWGARLLFKLCSIFLRNAREGAVSTLYCAVAKEVDGISGKYFDSNCTLTLPQALAREPSVGHRLWDALEK 317
BLAST of EWM26286.1 vs. NCBI_GenBank
Match: gi|1127363252|gb|APR84655.1| (Putative oxidoreductase/Short-chain dehydrogenase [Minicystis rosea]) HSP 1 Score: 208.764 bits (530), Expect = 6.893e-62 Identity = 126/279 (45.16%), Postives = 161/279 (57.71%), Query Frame = 0
Query: 54 DLDGKHFIVTGASAGIGKETVRTLAEWNASVVMAVRNVKKGTAVLEDIRLSIGRQDLPVEVWEMDLSKLSSVKDFADRYRDSGRPLHVLINNAGLVSWEYILTEDGHELTYQTNHLGHFLLTKLLMPSLLASAPSRVIQVSSDAHFMGK-IDLDHLDSSNDTYNSMSTYAHTKLMNVVYANELTRRFKDVGVVSTSLHPGFVATEFLRDLPEWAQPIKNAMCSLFARNEVEGAKTQIMAATAPAYEGVGGVYFDACAPRVPNKLVLDEHLAAAFWDKSE 331
DL GK F+VTGA+ GIG+ T TLA V +A R+ +K VLE IR + G E +DL L+SV+ A + D G PLHVLINNAGL LT+DG ELT+ TNHLG FL T LL+P L SAP+R++ V+S AH+ K ID D L T +M Y +KL NV++ EL R GV S SLHPG VA++ R +P W PI+ + E EGA+T + AT+P EG G+Y+D + PN+L D LA W KSE
Sbjct: 18 DLTGKVFLVTGANTGIGRVTAETLARRGGKVFLACRSEEKTRPVLEGIRAAGG----TAEFLALDLGSLASVRAAAKTFLDRGEPLHVLINNAGLAG-PRGLTQDGFELTFGTNHLGPFLFTSLLLPRLRESAPARIVNVASKAHYDAKGIDWDALKKPTRTITTMHEYQISKLCNVLFTKELARGKAGEGVKSYSLHPGVVASDIWRKIP-W--PIRPLILKGMITVE-EGAQTSLYCATSPEVEGQDGLYYDKSREKKPNRLADDVGLAKELWAKSE 287
BLAST of EWM26286.1 vs. NCBI_GenBank
Match: gi|1176296838|ref|XP_020650813.1| (retinol dehydrogenase 11-like [Pogona vitticeps]) HSP 1 Score: 209.149 bits (531), Expect = 1.300e-61 Identity = 113/286 (39.51%), Postives = 168/286 (58.74%), Query Frame = 0
Query: 50 LVPVDLDGKHFIVTGASAGIGKETVRTLAEWNASVVMAVRNVKKGTAVLEDIRLSIGRQDLPVEVWEMDLSKLSSVKDFADRYRDSGRPLHVLINNAGLVSWEYILTEDGHELTYQTNHLGHFLLTKLLMPSLLASAPSRVIQVSSDAHFMGKIDLDHLDSSNDTYNSMSTYAHTKLMNVVYANELTRRFKDVGVVSTSLHPGFVATEFLRDLPEWAQPIKNAMCSLFARNEVEGAKTQIMAATAPAYEGVGGVYFDA-CAPRVPNKLVLDEHLAAAFWDKSEEAI 334
+ PVDL GK +VTGAS GIGK R LA NA V+A R+ ++G A LE+IR + G + + + +D S ++SV+ FA ++ R L +L+NNAG + +TE+G EL + TN LG FLLT LL+ + SAP+RV+ VSS H+ G +++ L + + Y+ TKLMN+V+ +EL RR + GV ++HPG V TE +RD W + + + + +LF + EGA + + A + EGV G YFD+ C+ +P L D + WD +E AI
Sbjct: 35 VCPVDLTGKTAVVTGASTGIGKWIARDLARRNARTVLACRSRERGEAALEEIRRATGNPQVHLRL--LDTSSVASVRAFARQFLAEERRLDILVNNAGASGLPHRVTEEGLELLFATNALGPFLLTNLLLDIMKTSAPARVVNVSSYIHYKGDVNVKFLTGEERPKGASNAYSSTKLMNIVFTSELARRLRGTGVSVNAVHPGVVKTEIMRDYAWWMRLLFSILGTLFLKTPKEGATSALYCAVSREVEGVSGKYFDSDCSLTLPLALAEDPAVGRKLWDAAEAAI 318
BLAST of EWM26286.1 vs. NCBI_GenBank
Match: gi|657584807|ref|XP_008296569.1| (PREDICTED: retinol dehydrogenase 12-like isoform X1 [Stegastes partitus]) HSP 1 Score: 208.379 bits (529), Expect = 6.433e-61 Identity = 125/318 (39.31%), Postives = 175/318 (55.03%), Query Frame = 0
Query: 20 IKSFAMFKWLLVVVAVLLGVGSKYAKRKLPLVPVDLDGKHFIVTGASAGIGKETVRTLAEWNASVVMAVRNVKKGTAVLEDIRLSIGRQDLPVEVWEMDLSKLSSVKDFADRYRDSGRPLHVLINNAGLVSWEYILTEDGHELTYQTNHLGHFLLTKLLMPSLLASAPSRVIQVSSDAHFMGKIDLDHLDSSNDTYNSMSTYAHTKLMNVVYANELTRRFKDVGVVSTSLHPGFVATEFLRDLPEWAQPI---KNAMCSLFARNEVEGAKTQIMAATAPAYEGVGGVYFDACAPRVPNKLVLDEHLAAAFWDKSEEAI 334
++S A+ + L+ +AVL K+ + V LDGK ++TGA+ GIGKET R +A+ A VVMA R++ + E++R S G ++ + +DL+ + SVK FA + DS L +LINNAG++ LTEDG E NHLGHFLLT LL+P L +SAPSRVI VSS AH G+ID D L S TY+S+ +Y +KL NV+++ EL R K GV S SLHPG + TE R + W + L + +G +T + A P E G YF CA + D+ A W++S +
Sbjct: 41 LRSGALLGFTLICMAVL----RKWIGGGVCRCSVRLDGKTVLITGANTGIGKETSRDMAQRGARVVMACRDLTRAERAAEEVRRSTGNGNVVIR--HLDLASVYSVKQFAKDFLDSEDRLDILINNAGVMMCPKWLTEDGFETQLAVNHLGHFLLTNLLVPKLKSSAPSRVINVSSIAHQGGRIDFDDLFFSRRTYSSLESYRQSKLANVLFSRELACRLKGSGVSSFSLHPGVIRTELGRHVEGWFPLLGMLLRLPSLLLMKTPWQGCQTTVYCAVTPGLEERSGRYFSDCAEKETAPEGRDDVAARRLWEESARLV 352
BLAST of EWM26286.1 vs. NCBI_GenBank
Match: gi|72091878|ref|XP_793866.1| (PREDICTED: retinol dehydrogenase 12 [Strongylocentrotus purpuratus]) HSP 1 Score: 207.608 bits (527), Expect = 6.931e-61 Identity = 120/306 (39.22%), Postives = 174/306 (56.86%), Query Frame = 0
Query: 30 LVVVAVLLGVGSKYAKRKLP---LVPVDLDGKHFIVTGASAGIGKETVRTLAEWNASVVMAVRNVKKGTAVLEDIRLSIGRQDLPVEVWEMDLSKLSSVKDFADRYRDSGRPLHVLINNAGLVSWEYILTEDGHELTYQTNHLGHFLLTKLLMPSLLASAPSRVIQVSSDAHFMGKIDLDHLDSSNDTYNSMSTYAHTKLMNVVYANELTRRFKDVGVVSTSLHPGFVATEFLRDLPEWAQPIKNAMCSLFARNEVEGAKTQIMAATAPAYEGVGGVYFDACAPRVPNKLVLDEHLAAAFWDKSEE 332
+ ++ V+L VG Y K+ P LDGK IVTGA+ GIGKET R LA A V++A R+ +G +DIR+S G D V +++L+ S++ FA + ++ L +L+NNAG+++ + TE+GHEL + NHLGHFLLT +L+ L APSRVI VSSDA+ GK+DL+ L S ND + +YA +KL NV++ +L + GVVS SLHPG V TE R+ W + + + F ++ GA+T I A + G +F C + ++ D+ LA WD S E
Sbjct: 28 IALMMVVLVVGLYYYVVKVADRCSCPKRLDGKTVIVTGANTGIGKETARDLARRGARVILACRDAVRGREAEKDIRMSTGNDD--VIFMKLNLASFDSIRHFAQEFNNTEERLDILVNNAGVINDGSLRTEEGHELVFGVNHLGHFLLTNILLDKLQKCAPSRVINVSSDAYMFGKLDLERL-SVND--GRVKSYARSKLANVLFTRQLADKMAGTGVVSFSLHPGSVNTEIKRNWAGWLRALAPLISFFFLKSVKAGAQTSIHCAVSDDILDQSGEFFKGCQVQKLSRTAQDQDLAQRLWDVSLE 328
BLAST of EWM26286.1 vs. NCBI_GenBank
Match: gi|1083329732|ref|XP_018615370.1| (PREDICTED: retinol dehydrogenase 12-like [Scleropages formosus]) HSP 1 Score: 207.223 bits (526), Expect = 9.623e-61 Identity = 129/328 (39.33%), Postives = 182/328 (55.49%), Query Frame = 0
Query: 13 EQSKNHKIKSFAMFKWLLVVVAVLLGVGSKYAKRKLPLVPVDLDGKHFIVTGASAGIGKETVRTLAEWNASVVMAVRNVKKGTAVLEDIRLSIGRQDLPVEVWEMDLSKLSSVKDFADRYRDSGRPLHVLINNAGLVSWEYILTEDGHELTYQTNHLGHFLLTKLLMPSLLASAPSRVIQVSSDAHFMGKIDLDHLDSSNDTYNSMSTYAHTKLMNVVYANELTRRFKDVGVVSTSLHPGFVATEFLRDLPEWAQPIKNAM----CSLFARNEVEGAKTQIMAATAPAYEGVGGVYFDACAPRVPNKLVLDEHLAAAFWDKSEEAIQH 336
E+ K+ KI ++ + V A+ L + K+ + P L K ++TGA+ GIGKET R +A A VVMA R++ +G E+IR S G ++ V+ ++DL+ +SV+ FA RY + L +LINNAG++ LT DG E + NHLGHFLLT LL+ L S PSRVI VSS AH GKI D L S TYNS+++Y +KL N+++A EL RR K GV+S +LHPG + TE R + E P+ + L + EGA+T I A EG G YF CA + P D+ +A W+ S + + +
Sbjct: 3 EEIKSSKIATYGA---VTAVTAISLALLRKWISGGVCYSPARLHRKTVLITGANTGIGKETARDMARRGARVVMACRDLTRGEKAAEEIRSSTGNSEVVVQ--QLDLASFASVRQFAKRYSEQEERLDILINNAGVMMCPKGLTVDGFETQFAVNHLGHFLLTNLLLGKLQKSTPSRVITVSSLAHKGGKIHFDDLSFSKTTYNSLTSYRQSKLANLLFARELARRLKGSGVMSFALHPGVIRTELGRHV-ELQNPLLKVLLYIPAFLLLKTPWEGAQTSIYCAVTEGLEGKSGSYFSDCALKKPAPEAQDDLVALRLWEVSAQLVGY 324 The following BLAST results are available for this feature:
BLAST of EWM26286.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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