rna440, rna440 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna440
Unique Name	rna440
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	976
Alignment location	CM002455.1:1085981..1089035 +

Link to JBrowse

Properties


Property Name	Value
Product	RAP domain protein
Orig transcript id	gnl\|cribi\|Naga_100003g41.1735.mrna
Orig protein id	gnl\|cribi\|Naga_100003g41.1735
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:1085981..1089035 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100003g41	gene424	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna440	rna440-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30218.1	cds440	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:1085981..1089035+
coding sequence from alignment at CM002455.1:1085981..1089035+

mRNA sequence

>rna440 ID=rna440|Name=rna440|organism=Nannochloropsis gaditana|type=mRNA|length=976bp
CGCCTCCCCGTTCGCGTGTGGTGGTAAAGCACTGGCGAGCCGCACCCCGC
GCATGGTAATGGTAGCACGGGTTTTGAGGATGGTAGACGGGGCGGTGGCA
GTTTGGTTGTGAGGCTGTTGTCGTCCAGGGGCCCGCTCCTTATTTTCCTT
TTCCTGTGTGGCAACGGACGGCTGTCGAGCATCGCGTGCACCGCCCTCCA
CGGGCAAGCTAGGCCTTCCCTTTTTTCTCTCTTATTGTCGTCACGGTGAT
CAACGACATGTGGCATCAAATGTGAACTGAGTGCAATGCAGGATGGCATG
ACTGTCGTCCTGCTGGAATAGCGACAATGGTGGGTTTATGGAATCGGCAT
CATCCGTGCTGTCGTTCTCACGCTTCTTCATACGCATACCACACACGCTA
CATCCTTGTTTTCCTTACACCCGTCATATCTATCGACCTTAAACTTGTCA
TCAGTCACCATGGGAAAGCGCACTAAGAAAGTAGGAATTTGCGGGAAGTA
TGGTACGCGATACGGAGCTTCCCTGCGAAAGATTATCAAAAAGATTGAAA
TATCACAGCATTCCAAGTACACGTGCGTCTTTTGCGGGAAGGACAACGTA
AAGCGGGAAGTGGTGGGCATCTGGAAGTGCGGTTCATGCAAGAAGAGCAT
GGCGGGCGGTGCCTACACGCTTTCCACTGCAGCTGCGGTCCAAGTGCGAT
CAACACTCGCTCGCCTACGCAAGGCTAAGGCCGAGGCCGTCTAAAGTCCT
TGATAGCGAAAAAGATGGAAGGCATGGCAAGGGAAGGAGGGGGGAGGGAC
GGGATCGGGAACAGCAGAGTAGCGCAAGCGTGGCGTGAGGGCGTGGGGGT
CTGGTTTCACAACGGAATCTACGGAAGACGACAGTTATGCTTGAGAAACT
CTGCACCTTAGAAGAAGAATCATGCTTGAGAAACTCTGCACCTTAGAAGA
AGAATCTCTCACCTATTTTAATTGTG

protein sequence of rna440

>rna440-protein ID=rna440-protein|Name=rna440|organism=Nannochloropsis gaditana|type=polypeptide|length=787bp
MRGRHFCPAVAALSQHTMVEFPGHGMYSRGAQTNESPHRTTSSRRRPRQR
TVANVMVKWCSVTALFGGLQQLSRGDAFQSTCSGSSPGLPRVRCNAPRPV
FLPPLFSSFAGSSDGSFDMSFDEFFRSETSNGNACTPGTSTTWRDLASHR
APGTPPPRFPRHRQQLGSPLSPPASPALAETTDVALPSDPQRPQAARPPL
PGRLGAGFQLGDWRASKEESQHTQSLILQAQSEPADMLRLLLDNPSCCNH
VNVCTVLHRCARLAGTPRLTPAIEATITQSLLPVVAEVLPACKGRQLCNL
AWSLVRLGMPDEALFDATIDRLQERQGGLLEACNAGELAMVLWAIASAGL
TFQHASFFERAAGSLAELAVGLRPREIGLITWAYATWLGNDLKLNGQQQR
GMGAGGLGGWESCDAVEGEAGAGWAAGLPGPSGRKWLVAPMVSLLEATLQ
VEADLQAKDIAMIAWAFGKIAALDWNAMGPHVDMLCAVLASAALRHIRDF
SAQDLAELSVGVVAMQYDNANLMQLVAYQAARKLRSFSHRELSNIIWAYG
KVFRRPRKFVLAAAAEARLRLPYFTPTELANVAWALTVLEVYDVGLFREV
FARAAADEGLRLLQEGDLNQLYQVYCLLRLQAPEAVTGVGRGLLVAMEEA
WAISKDREKRTTKRQAAVAKVLESLHIRHRVEAENDIDILLPEHGVALEV
DGPAHFLRNTGHPMGHTIMKRRLLELMGYNVISVPHFEFDRIPYWSSMEL
KRYLQRKCQTEEVLYYNDLDSSTHKPYPPRGKKTRFD

mRNA from alignment at CM002455.1:1085981..1089035+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna440 ID=rna440|Name=rna440|organism=Nannochloropsis gaditana|type=mRNA|length=3055bp|location=Sequence derived from alignment at CM002455.1:1085981..1089035+ (Nannochloropsis gaditana)
ATGCGCGGGGTGCGGCTCGCCAGTGCTTTACCACCACACGCGaacgggga
ggcgggcagggcgGCGACGGAGGGCCCTCAGACCGTAATTACCTCCCACT
TCGGCCCACCCCCATACCGCGCATCTGCGGCTGCCTTTCGCCGCTGGACT
CGCCGCTATTTCTTGGCGTAACACGGGACCGCTGCcctcaaggaggaaga
aaatctTGCGATGGTCCAGTTCAACGACCTCCGGATGGAGTCACCGGTGT
TGCGCGGGTGCGCATAGAAATGCGGATTTCCACCCCTTGCTTTCTAAACA
TTACTATCATCATGACCGTCGCTGGCACCCTCGCGCCTGCAAGTGACGGT
TTTCTTGGTTGATGATGGCAGAAATGGATGCGTAGCACTGTGGTCTAAAC
AGTCTGGCTTATTCGCGAGGTGGGGACGCTCTTTAGCACTCACCATCGAA
AGTGTTGATTGTCGCTTCTTTCGTGAGGGTGAGGGACGTGCACTGCTCTG
CAGAGATTTACTAGATCTGCGCATGAATTGGCTCTCTGGCACGCTGGAAT
AATCAGTTTGCGCTCAGTCACTCTCCCGTGCAATCGACCTCGTTGTGACT
CTGGCTGCGTCTCATGCgattttctctttcccctcgacTCTTTTCATACA
CCACAGAGAAATAGAAATTATTGATGCCTTTTGCTTAGTAGCGTACATAG
AGACATTTTTGCCCGGCCGTGGCTGCTCTCAGCCAGCACACCATGGTGGA
GTTTCCCGGGCATGGTATGTACTCGAGGGGCGCACAGACGAATGAGAGCC
CTCACCGGACCACTTCAAGCCGAAGGCGTCCGCGTCAAAGAACTGTCGCT
AATGTAATGGTGAAATGGTGCTCGGTCACCGCGCTTTTCGGTGGCCTACA
GCAATTATCGCGAGGAGACGCATTTCAGTCCACGTGTTCGGGATCATCTC
CAGGTCTACCGCGCGTCCGCTGCAATGCCCCACGACCAGTTTTTTTGCCT
CCGCTTTTCTCTTCGTTTGCGGGCAGCAGCGACGGAAGCTTCGACATGAG
TTTTGATGAGTTTTTCAGAAGCGAGACAAGCAATGGGAACGCGTGCACAC
CCGGCACTTCGACGACCTGGCGGGACCTGGCCTCGCATCGCGCCCCcggc
accccccccccccgttttCCCCGTCACCGGCAGCAGCTGggctctcctct
ttcccctcccgcctccccagCTCTGGCTGAGACGACCGACGTGGCCCTGC
CCTCCGACCCGCAGAGGCCGCAAGCCGCAAGGCCGcctctcccgggccgc
cTCGGCGCAGGCTTCCAGCTCGGGGACTGGCgggcgagcaaggaggagtc
TCAACACACGCAAAGCCTCATCCTCCAGGCCCAATCCGAGCCTGCGGACA
TgcttcgcctcctgctcgacaACCCTTCCTGCTGCAACCACGTGAACGTC
TGCACTGTCCTGCACCGGTGTGCGAGGCTGGCCGGGACGCCGCGTCTGAC
CCCCGCCATCGAGGCCACCATCACCCAGAGCCTCCTGcccgtggtggcgg
aggtccTGCCGGCGTGCAAGGGCCGCCAGCTCTGCAACCTGGCCTGGTCC
CTCGTCAGGCTCGGGATGCCGGACGAGGCCCTCTTTGACGCCACCATCGA
CCGGCTCCAGGAGCGGCAGGGGGGCCTCCTGGAAGCCTGCAATGCGGGGG
AGCTGGCTATGGTGCTGTGGGCCATCGCCTCGGCGGGCTTGACCTTCCAG
CACGCCTCGTTCTTCGAGAGGGCGGCCGGGTCCTTGGCGGAGCTAGCGGT
GGGGCTCCGGCCCCGCGAGATCGGCCTCATTACCTGGGCGTACGCGACCT
GGCTGGGGAACGACTTGAAGCTGAacgggcagcagcagcgagggatggga
gcagggggacTGGGCGGATGGGAGAGCTGCgacgcggtggaaggggaggc
gggggccgggtGGGCGGCGGGGCTGCCGGGGCCcagtgggaggaaatggt
tGGTGGCCCCCATGGTGAGTTTGTTGGAAGCGACGctgcaggtggaggca
gaTTTGCAGGCCAAGGATATCGCCATGATCGCGTGGGCCTTTGGGAAGAT
CGCGGCTCTGGATTGGAACGCCATGGGCCCGCACGTGGACATGCTCTGCG
CAGTcttggcctcggcggcgCTCCGGCACATCCGCGACTTCAGCGCGCAA
GACTTGGCCGAGCTTTCTGTGGGTGTGGTGGCCATGCAGTACGACAATGC
CAACCTCATGCAGCTGGTTGCCTACCAGGCGGCCCGGAAGCtccgctcct
tttcccaccggGAGCTCAGCAACATTATCTGGGCGTACGGGAAGGTCTTT
CGCCGGCCTCGGAAGTTCGTGCTGGCCGCCGCGGCAGAAGCGCGGCTTCG
TCTCCCGTATTTCACCCCTACAGAACTTGCGAACGTGGCCTGGGCACTGA
CGGTGCTGGAAGTCTACGATGTCGGGCTCTTCCGAGAGGTGTTTGCCAGG
GccgcggcggacgaggggcTGCGGCTTTTGCAAGAAGGGGACCTGAACCA
ATTGTACCAAGTGTACTGCCTGTTGCGGCTGCAAGCGCCCGAGGCCGTTA
CAGGCGTGGGGCGGGGCTTGCTcgtggcgatggaggaggcttgggcCATC
AGCAAGGATCGGGAGAAGCGGACGACCAAGCGGCAGGCGGCCGTCGCCAA
AGTGCTGGAGAGCCTGCACATCCGTCACCGGGTGGAAGCCGAAAATGACA
TCGACATTCTCCTGCCTGAGCACGGAGTGGCCTTGGAAGTCGATGGGCCC
GCGCATTTTTTGAGGAACACAGGCCATCCGATGGGACACACCATTATGAA
GCGGCGCCTGCTGGAGCTGATGGGCTACAATGTTATCTCAGTGCCGCACT
TTGAGTTCGACCGCATTCCTTACTGGTCTTCCATGGAACTTAAGCGATAT
TTGCAGCGCAAATGTCAGACTGAAGAAGTGTTGTATTACAACGACCTGGA
TTCCTCGACTCACAAGCCTTACCCTCCCCGGGGAAAGAAGACGCGCTTCG
ATTGA

Coding sequence (CDS) from alignment at CM002455.1:1085981..1089035+

>rna440 ID=rna440|Name=rna440|organism=Nannochloropsis gaditana|type=CDS|length=4728bp|location=Sequence derived from alignment at CM002455.1:1085981..1089035+ (Nannochloropsis gaditana)
ATGCGCGGGAGACATTTTTGCCCGGCCGTGGCTGCTCTCAGCCAGCACAC
CATGGTGGAGTTTCCCGGGCATGGTATGTACTCGAGGGGCGCACAGACGA
ATGAGAGCCCTCACCGGACCACTTCAAGCCGAAGGCGTCCGCGTCAAAGA
ACTGTCGCTAATGTAATGGTGAAATGGTGCTCGGTCACCGCGCTTTTCGG
TGGCCTACAGCAATTATCGCGAGGAGACGCATTTCAGTCCACGTGTTCGG
GATCATCTCCAGGTCTACCGCGCGTCCGCTGCAATGCCCCACGACCAGTT
TTTTTGCCTCCGCTTTTCTCTTCGTTTGCGGGCAGCAGCGACGGAAGCTT
CGACATGAGTTTTGATGAGTTTTTCAGAAGCGAGACAAGCAATGGGAACG
CGTGCACACCCGGCACTTCGACGACCTGGCGGGACCTGGCCTCGCATCGC
GCCCCcggcaccccccccccccgttttCCCCGTCACCGGCAGCAGCTGgg
ctctcctctttcccctcccgcctccccagCTCTGGCTGAGACGACCGACG
TGGCCCTGCCCTCCGACCCGCAGAGGCCGCAAGCCGCAAGGCCGcctctc
ccgggccgccTCGGCGCAGGCTTCCAGCTCGGGGACTGGCgggcgagcaa
ggaggagtcTCAACACACGCAAAGCCTCATCCTCCAGGCCCAATCCGAGC
CTGCGGACATgcttcgcctcctgctcgacaACCCTTCCTGCTGCAACCAC
GTGAACGTCTGCACTGTCCTGCACCGGTGTGCGAGGCTGGCCGGGACGCC
GCGTCTGACCCCCGCCATCGAGGCCACCATCACCCAGAGCCTCCTGcccg
tggtggcggaggtccTGCCGGCGTGCAAGGGCCGCCAGCTCTGCAACCTG
GCCTGGTCCCTCGTCAGGCTCGGGATGCCGGACGAGGCCCTCTTTGACGC
CACCATCGACCGGCTCCAGGAGCGGCAGGGGGGCCTCCTGGAAGCCTGCA
ATGCGGGGGAGCTGGCTATGGTGCTGTGGGCCATCGCCTCGGCGGGCTTG
ACCTTCCAGCACGCCTCGTTCTTCGAGAGGGCGGCCGGGTCCTTGGCGGA
GCTAGCGGTGGGGCTCCGGCCCCGCGAGATCGGCCTCATTACCTGGGCGT
ACGCGACCTGGCTGGGGAACGACTTGAAGCTGAacgggcagcagcagcga
gggatgggagcagggggacTGGGCGGATGGGAGAGCTGCgacgcggtgga
aggggaggcgggggccgggtGGGCGGCGGGGCTGCCGGGGCCcagtggga
ggaaatggttGGTGGCCCCCATGGTGAGTTTGTTGGAAGCGACGctgcag
gtggaggcagaTTTGCAGGCCAAGGATATCGCCATGATCGCGTGGGCCTT
TGGGAAGATCGCGGCTCTGGATTGGAACGCCATGGGCCCGCACGTGGACA
TGCTCTGCGCAGTcttggcctcggcggcgCTCCGGCACATCCGCGACTTC
AGCGCGCAAGACTTGGCCGAGCTTTCTGTGGGTGTGGTGGCCATGCAGTA
CGACAATGCCAACCTCATGCAGCTGGTTGCCTACCAGGCGGCCCGGAAGC
tccgctccttttcccaccggGAGCTCAGCAACATTATCTGGGCGTACGGG
AAGGTCTTTCGCCGGCCTCGGAAGTTCGTGCTGGCCGCCGCGGCAGAAGC
GCGGCTTCGTCTCCCGTATTTCACCCCTACAGAACTTGCGAACGTGGCCT
GGGCACTGACGGTGCTGGAAGTCTACGATGTCGGGCTCTTCCGAGAGGTG
TTTGCCAGGGccgcggcggacgaggggcTGCGGCTTTTGCAAGAAGGGGA
CCTGAACCAATTGTACCAAGTGTACTGCCTGTTGCGGCTGCAAGCGCCCG
AGGCCGTTACAGGCGTGGGGCGGGGCTTGCTcgtggcgatggaggaggct
tgggcCATCAGCAAGGATCGGGAGAAGCGGACGACCAAGCGGCAGGCGGC
CGTCGCCAAAGTGCTGGAGAGCCTGCACATCCGTCACCGGGTGGAAGCCG
AAAATGACATCGACATTCTCCTGCCTGAGCACGGAGTGGCCTTGGAAGTC
GATGGGCCCGCGCATTTTTTGAGGAACACAGGCCATCCGATGGGACACAC
CATTATGAAGCGGCGCCTGCTGGAGCTGATGGGCTACAATGTTATCTCAG
TGCCGCACTTTGAGTTCGACCGCATTCCTTACTGGTCTTCCATGGAACTT
AAGCGATATTTGCAGCGCAAATGTCAGACTGAAGAAGTGTTGTATTACAA
CGACCTGGATTCCTCGACTCACAAGCCTTACCCTCCCCGGGGAAAGAAGA
CGCGCTTCGATTGAATGCGCGGGAGACATTTTTGCCCGGCCGTGGCTGCT
CTCAGCCAGCACACCATGGTGGAGTTTCCCGGGCATGGTATGTACTCGAG
GGGCGCACAGACGAATGAGAGCCCTCACCGGACCACTTCAAGCCGAAGGC
GTCCGCGTCAAAGAACTGTCGCTAATGTAATGGTGAAATGGTGCTCGGTC
ACCGCGCTTTTCGGTGGCCTACAGCAATTATCGCGAGGAGACGCATTTCA
GTCCACGTGTTCGGGATCATCTCCAGGTCTACCGCGCGTCCGCTGCAATG
CCCCACGACCAGTTTTTTTGCCTCCGCTTTTCTCTTCGTTTGCGGGCAGC
AGCGACGGAAGCTTCGACATGAGTTTTGATGAGTTTTTCAGAAGCGAGAC
AAGCAATGGGAACGCGTGCACACCCGGCACTTCGACGACCTGGCGGGACC
TGGCCTCGCATCGCGCCCCcggcaccccccccccccgttttCCCCGTCAC
CGGCAGCAGCTGggctctcctctttcccctcccgcctccccagCTCTGGC
TGAGACGACCGACGTGGCCCTGCCCTCCGACCCGCAGAGGCCGCAAGCCG
CAAGGCCGcctctcccgggccgccTCGGCGCAGGCTTCCAGCTCGGGGAC
TGGCgggcgagcaaggaggagtcTCAACACACGCAAAGCCTCATCCTCCA
GGCCCAATCCGAGCCTGCGGACATgcttcgcctcctgctcgacaACCCTT
CCTGCTGCAACCACGTGAACGTCTGCACTGTCCTGCACCGGTGTGCGAGG
CTGGCCGGGACGCCGCGTCTGACCCCCGCCATCGAGGCCACCATCACCCA
GAGCCTCCTGcccgtggtggcggaggtccTGCCGGCGTGCAAGGGCCGCC
AGCTCTGCAACCTGGCCTGGTCCCTCGTCAGGCTCGGGATGCCGGACGAG
GCCCTCTTTGACGCCACCATCGACCGGCTCCAGGAGCGGCAGGGGGGCCT
CCTGGAAGCCTGCAATGCGGGGGAGCTGGCTATGGTGCTGTGGGCCATCG
CCTCGGCGGGCTTGACCTTCCAGCACGCCTCGTTCTTCGAGAGGGCGGCC
GGGTCCTTGGCGGAGCTAGCGGTGGGGCTCCGGCCCCGCGAGATCGGCCT
CATTACCTGGGCGTACGCGACCTGGCTGGGGAACGACTTGAAGCTGAacg
ggcagcagcagcgagggatgggagcagggggacTGGGCGGATGGGAGAGC
TGCgacgcggtggaaggggaggcgggggccgggtGGGCGGCGGGGCTGCC
GGGGCCcagtgggaggaaatggttGGTGGCCCCCATGGTGAGTTTGTTGG
AAGCGACGctgcaggtggaggcagaTTTGCAGGCCAAGGATATCGCCATG
ATCGCGTGGGCCTTTGGGAAGATCGCGGCTCTGGATTGGAACGCCATGGG
CCCGCACGTGGACATGCTCTGCGCAGTcttggcctcggcggcgCTCCGGC
ACATCCGCGACTTCAGCGCGCAAGACTTGGCCGAGCTTTCTGTGGGTGTG
GTGGCCATGCAGTACGACAATGCCAACCTCATGCAGCTGGTTGCCTACCA
GGCGGCCCGGAAGCtccgctccttttcccaccggGAGCTCAGCAACATTA
TCTGGGCGTACGGGAAGGTCTTTCGCCGGCCTCGGAAGTTCGTGCTGGCC
GCCGCGGCAGAAGCGCGGCTTCGTCTCCCGTATTTCACCCCTACAGAACT
TGCGAACGTGGCCTGGGCACTGACGGTGCTGGAAGTCTACGATGTCGGGC
TCTTCCGAGAGGTGTTTGCCAGGGccgcggcggacgaggggcTGCGGCTT
TTGCAAGAAGGGGACCTGAACCAATTGTACCAAGTGTACTGCCTGTTGCG
GCTGCAAGCGCCCGAGGCCGTTACAGGCGTGGGGCGGGGCTTGCTcgtgg
cgatggaggaggcttgggcCATCAGCAAGGATCGGGAGAAGCGGACGACC
AAGCGGCAGGCGGCCGTCGCCAAAGTGCTGGAGAGCCTGCACATCCGTCA
CCGGGTGGAAGCCGAAAATGACATCGACATTCTCCTGCCTGAGCACGGAG
TGGCCTTGGAAGTCGATGGGCCCGCGCATTTTTTGAGGAACACAGGCCAT
CCGATGGGACACACCATTATGAAGCGGCGCCTGCTGGAGCTGATGGGCTA
CAATGTTATCTCAGTGCCGCACTTTGAGTTCGACCGCATTCCTTACTGGT
CTTCCATGGAACTTAAGCGATATTTGCAGCGCAAATGTCAGACTGAAGAA
GTGTTGTATTACAACGACCTGGATTCCTCGACTCACAAGCCTTACCCTCC
CCGGGGAAAGAAGACGCGCTTCGATTGA

Synonyms

Publications