rna4399, rna4399 (mRNA) Nannochloropsis gaditana

Overview
Namerna4399
Unique Namerna4399
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2541
Alignment locationCM002463.1:494036..495475 -

Link to JBrowse

Properties
Property NameValue
Product3-hydroxybutyrate dehydrogenase
Orig transcript idgnl|cribi|Naga_100073g11.10391.mrna
Orig protein idgnl|cribi|Naga_100073g11.10391
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:494036..495475 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100073g11gene4243Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26283.1cds4389Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4399rna4399-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4399 ID=rna4399|Name=rna4399|organism=Nannochloropsis gaditana|type=mRNA|length=2541bp
TGCCCGCAGGCCGCGTGACTCGCCAACCTCAGCCTTGCAGGGGTCCGAAA
AAGTTCAAATTCCCCATTCCCGCCTAGCTACGAGACGTGTTGGGAAAAGG
GCACAAGGACGAAAGAGCCCGAGGGCGTTTCGGTCCACAAATAAGGAGGA
GACCTCGGTCTACAAATAAAGGGGAGATCTCGGTCCACAAAAAGCCGCGA
GGTCTCACACTGTGATGGAAAAGATGCCCGAGTGGTGGAATGTTCTTTGA
CCACAGAGGAAGTTTGTCGACTTTGGAGCGACTGAGTGAGATATGGATTT
GGACGCAATTGCCATAAATTTGTTGGAAAACGACTGGGCCGGGAAAAATG
ACTCTTTCTCCTGTATTTTATTTGGCGTTCTGAGATTTTTTCAGCGCTGA
GATCATTTCCACCTCCCTTTGTTTCAGCATATTTGAAGCCCTTCAGGTAA
CGACTTGGTCTTCCTGTCCGTCTCGATTGATCCATGACAAGCGTAGAGGC
AGAGACACACAAAGCGGCGGGGAACAAGGCACTTCAAGCCAAGGACTACG
ATGAAGCTATCAAATGCTACACGCAAGCACTCGAGGTGAGCGCAGCCCTA
CCCGTAACAGGGGAAGGAGCTGCTCCCCGACATGTGTACTTCTCCAACCG
ATCGGCTGCCTATCTTTCCAAGGGAGATGCCGCTGCCGCTTTGGAAGATG
CTGAGCAATGCATCAAAGCGAACCCTACGTGGCCCAAAGGATTTTCACGG
AAAGGCGCTGCATTGCACACCATGAAGCGCTACGATGAAGCCCAAGCGGC
TTATGAAGGAGGTCTTGAGGTGGCTCCCGACGACGCCGGGCTCGCATCTG
CTCTAGAAGACGTTAAGAAGGTGAAGGAGAGCAGCAACAAGCCGCGCGTC
AACCCCTTGGCATCGATCTTCGCGCCTGAGAACGTGGCGCGGTTGGCGGG
GCACCCAGTTTTTTGCAAGTACTTGCTGGACTCGGAGTTTATGGCCAAGA
TCAAGCTGATACAGACAGACCCGAATGCGTTCAATACGATCCTGCAGGAC
AAGCGAATCATGGACGTGTTTGGGTTCTTGACAGGCATTGACATGCGGGC
CGGGGATATGGACGAGCAGGAGAGTGAGGCCTCCACCGTCAAGAAAGAGG
CGGCCCCGGCCCCCGCGCCCGCCCCTGAGCCCGCGGAGGAGGATCTGAGC
GAAGCCGAGCGAGAAGAGCGGAAAAGAAAGCACGAGGCCCTGGAGGCGAA
AGAGCGAGGCAACCAGCATTACATGAAGAAGGAGTTCGTGGAGGCGCTGG
CTGCCTATGAGGATGCCATCGTAAAAGACCCCTCGAACATGGCCTTCCTG
ACCAACAAGGCTGCCGTCTTTTTTGAGCAGGGAGACTTTACCAAAACAGT
GGCACAGTGCGACGAAGCCATCCAGGTGGGCCGCGCGAACAGGGCTCCAT
ACCCGGACGTGGCCAAGGCCCTGGTCCGGAAGGGGAAGGCGTTAGCCAAG
CAAGGCGATTTGGCCAACGCAATAGAAGCCTACCGAGACGCGCAAATGGA
ACACTTCGACAAAACGGTGGAGCGGCTGATTAAGAGCACGGAGGTGGAGC
GCAAGAAGCAGGAGGAGTTGGCGTATGTGGATCCCGCCAAGGCAGTGGAG
GCGAAGGACCGGGGGAACGAGGCCTTCCGGGCGGGAAAATGGCCGGACGC
GGTGAAAGAATACAATGAAGCGATCAGACGGGACCCTTCGAACGCCGCTT
ATCACAACAATCTGGCGGCCGCATTGTCCAAACTCATGGATTTCTCGGCG
GCCAAGACGGCATGCGAGAAGGCGATCGCCCTCGACCCCAAGTACGTGAA
GGCCTGGGCCAAGAAGGGGGACATCGAGTTTTTCATGAAAGAATACCATC
GGGCCCTCGAGTCTTACAAGCATGGCCTGGAGATCGAACCCAACAACAGC
TTGTGTGTCCAAGGACTGCAAAAAACGAGTGCCCGTATCCGCGACGCCTC
ATCGCAGGAGGCTGACATGGAGCGTGCCGCGCACGGCATGGCCGACCCGG
AGGTACAGGCTATCTTAGGCGATCCTGTGATCCAGCAAGTACTCAGAGAT
CTTCAAGAAAATCCACGAGAGGGAAGGCAAGCATTGAGTGACCCTGGTGT
CGCGGCCAAAATCGAAAAACTCATCAATGCGGGGGTCTTGCGAACCAAGT
AAAGAAAATGCAAGTGAACGAGGACTTATCATGGCGGGCAACATTAGGTT
GGATATCTTTCTTCATAGGCAGTCTCGTATATTGCGCTAGGAAGGAAGTA
GAAAAAGCGAGGGAGGAAAGGTATGGGGGAAGGATGTTGAGTTCATCACC
GTATGTATTTGACTCTCAGATAGAGCAAGGCTAGCAAAGCGAACATGTTG
GGTAATGTTTTCCCTAAATTATACAGCGGCCCTACGGGCAAGCATGCTTT
ATATTGCTTATAGAAAAAGGGAATGGGCGAGTCTCCACCTCTGCCTGTTT
CTTCGCTTTTCAAAATTGTGAAAATCAGTTTCCCGGCGATC
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protein sequence of rna4399

>rna4399-protein ID=rna4399-protein|Name=rna4399|organism=Nannochloropsis gaditana|type=polypeptide|length=263bp
MELSLQGSRRAFITGAGSGIGAGIASSLALEHGWEVIATDVNLEAAQGTA
AQIKAKDGKAEAYALNVADNTQIVSLIEQLKREGKNVDVLINNAGLQHVA
RLEDFPAEKWGFMIQVMLTGVADLTRAILPMMHEQGFGRIVNIGSIHSVI
ASPFKSAYVAAKHGLIGFSKVIALETSDVDITINTICPSYVKTPLVDAQI
ANQAKTHGISEDEVINKIMLEPMPKKAFISIQELVGTTLFLTSDAARNMT
GQTLVLDGGWTVR
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mRNA from alignment at CM002463.1:494036..495475-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4399 ID=rna4399|Name=rna4399|organism=Nannochloropsis gaditana|type=mRNA|length=1440bp|location=Sequence derived from alignment at CM002463.1:494036..495475- (Nannochloropsis gaditana)
GAAGAGATGGCAAGCTTGGTAGCAGGCTCGGATTGCGTAGTCCAAATTTT
AAATTTAGCACTGGGCCTTAACTGACAACAACGGCCGAGCTGAAGCTCAA
CGGAAGACAACTGTCGGTATGGGCTTGCGCCTCAGAAAGACTTGCCTGCG
CCAAACCTTATTATGCCTGTATACCCGTATAAATTGCTTGTTTTGCAAGC
CTTTGAATAATTGGAATTTTTCGGTGTTGATTGTTTCGGCTACAGGTCAA
ACGGCCTGTTAGGGTTACTCCGAGCGGAATGGAATTGTCCTTGCAAGGGT
CCCGTCGTGCATTCATTACGGGAGCAGGAAGCGGCATCGGTGCTGGTATA
GCCTCTTCATTAGCTCTTGAACATGGATGGGAAGTGATAGCAACAGACGT
TAATTTGGAGGCGGCGCAAGGCACAGCCGCGCAGATAAAGGCCAAAGATG
GTAAAGCGGAAGCCTATGCGCTGAATGTGGCTGACAATACCCAAATAGTC
TCACTCATTGAGCAGCTAAAAAGAGAAGGAAAAAATGTCGATGTTCTGAT
AAATAATGCAGGTTTGCAGCACGTGGCGCGTCTCGAAGACTTTCCTGCTG
AGAAATGGGGATTCATGATCCAAGTCATGTTGACTGGTGTGGCTGATCTC
ACAAGGGCAATCTTACCAATGATGCATGAACAAGGATTCGGACGTATTGT
TAACATTGGTTCTATCCATAGCGTTATCGCATCCCCCTTCAAATCCGCGT
ACGTGGCTGCAAAGCACGGTCTCATCGGATTCTCCAAGGTAATAGCCTTG
GAGACCAGCGACGTAGATATTACCATCAACACCATTTGTCCATCCTATGT
GAAGACTCCTCTGGTAGATGCTCAAATCGCAAATCAGGCGAAGACACACG
GTATCAGCGAGGATGAGGTAATCAACAAAATTATGCTCGAGCCCATGCCC
AAAAAGGCCTTCATTTCCATTCAAGAACTGGTTGGCACTACTCTTTTTTT
GACATCCGATGCCGCGAGGAACATGACGGGCCAGACGCTAGTACTTGACG
GCGGCTGGACGGTACGTTGATATACCGCACATACGCGTGCTGGTAAGAAA
TTACACTGACACATAAAAGTTACAGATGGGCTTGCCTGCTTGACAAATTA
TAAATATGATACGTACACATATAAAGGCTGAAACGGTCAGTAGCAACGAC
AAGCTTGGCAAGTTGTAAAAATTTTCTTTTCGCATTATCATAAACTTACG
GCTGCAGCTTAATCACAAGCAATTTTTGAGTCGAATGAGCTGAGAGCAAC
TCCGAAAGCTTGCAACGGAGTGAACGGCCAACGAACATCCATCGTGAATT
CGTGTTTGTCCACCCTCCCGAACTGAAGTAAAACTGTCTCATGATCTTTC
GGTGCAACAAGTTGGAAATTCTTGACTGAGGCCATTGTGA
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Coding sequence (CDS) from alignment at CM002463.1:494036..495475-

>rna4399 ID=rna4399|Name=rna4399|organism=Nannochloropsis gaditana|type=CDS|length=792bp|location=Sequence derived from alignment at CM002463.1:494036..495475- (Nannochloropsis gaditana)
ATGGAATTGTCCTTGCAAGGGTCCCGTCGTGCATTCATTACGGGAGCAGG
AAGCGGCATCGGTGCTGGTATAGCCTCTTCATTAGCTCTTGAACATGGAT
GGGAAGTGATAGCAACAGACGTTAATTTGGAGGCGGCGCAAGGCACAGCC
GCGCAGATAAAGGCCAAAGATGGTAAAGCGGAAGCCTATGCGCTGAATGT
GGCTGACAATACCCAAATAGTCTCACTCATTGAGCAGCTAAAAAGAGAAG
GAAAAAATGTCGATGTTCTGATAAATAATGCAGGTTTGCAGCACGTGGCG
CGTCTCGAAGACTTTCCTGCTGAGAAATGGGGATTCATGATCCAAGTCAT
GTTGACTGGTGTGGCTGATCTCACAAGGGCAATCTTACCAATGATGCATG
AACAAGGATTCGGACGTATTGTTAACATTGGTTCTATCCATAGCGTTATC
GCATCCCCCTTCAAATCCGCGTACGTGGCTGCAAAGCACGGTCTCATCGG
ATTCTCCAAGGTAATAGCCTTGGAGACCAGCGACGTAGATATTACCATCA
ACACCATTTGTCCATCCTATGTGAAGACTCCTCTGGTAGATGCTCAAATC
GCAAATCAGGCGAAGACACACGGTATCAGCGAGGATGAGGTAATCAACAA
AATTATGCTCGAGCCCATGCCCAAAAAGGCCTTCATTTCCATTCAAGAAC
TGGTTGGCACTACTCTTTTTTTGACATCCGATGCCGCGAGGAACATGACG
GGCCAGACGCTAGTACTTGACGGCGGCTGGACGGTACGTTGA
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Synonyms
Publications