rna4390, rna4390 (mRNA) Nannochloropsis gaditana

Overview
Namerna4390
Unique Namerna4390
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length696
Alignment locationCM002463.1:463985..464697 +

Link to JBrowse

Properties
Property NameValue
Productatp-binding cassette superfamily
Orig transcript idgnl|cribi|Naga_102378g1.5986.mrna
Orig protein idgnl|cribi|Naga_102378g1.5986
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:463985..464697 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102378g1gene4234Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4390rna4390-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26293.1cds4380Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4390 ID=rna4390|Name=rna4390|organism=Nannochloropsis gaditana|type=mRNA|length=696bp
ATGTTGAACTTCATGTGCGGCGTTGTTCTTGTGACCTTGACGGTGATGAT
GACCTTCATTCCAATCACCCGCGATGTGGCTTTGAAATTGGTGTATCTTT
TCAGGCTCGCTCCGCCATTCGCTGCAGGAAATGGGCTCTTGAATGTCGTC
TTCACAGACTTCTTTTCGTCGCTGGATCAGAAACAATACACACCATACTC
GTTGAACATCGCCGGGTACTCTATGATCTACATGAGTGTGGAGACTGTAG
TATATTTCGTCCTGGTCTTGTGGGTCGAGTACTTGATCCGTCGTCCTACC
GTATCGAAGCTTTTAGAGGGCGGCTCTTCGTCGATGGCTGCAAAGGACTG
CTCTGGAAAAGACGAAGCCGTGCTGGAGGAGGAGGATCGCGTGCGTCGCG
AGGCAACGATAGACACAATGAAAGCGGGAGGGGATGTCGTGGTGATCAAG
GACATGACCAAGACGTATCGTGGCGGGAAACTAGCTGTGAGGGGCATGTC
TCTTGGCATCCCTAATGGGGAGTGCTTCGGTCTGCTTGGTGTGAACGGTG
CAGGCAAAACGACCACGCTGAGCATTCTGACGGCTGAGTTCCCGCCGTCG
TCAGGGCAGGTGTGGCTTGGCGGGTACGACATCGCTGACAACCCGGAAGT
GGTTCGCCGCCTGGTAGGGAGCATTTGGAGCTGTACGCCCGTGTGA
back to top

protein sequence of rna4390

>rna4390-protein ID=rna4390-protein|Name=rna4390|organism=Nannochloropsis gaditana|type=polypeptide|length=221bp
MAMIGSPQIVILDEPSSGMDAVARRFMWKVISDITTKRGECCVILTTHSM
EECEALCTRIGIMVGGRFRCMGSAQHLKSRYGMGYQLEISVALPRGEIVP
ASDDEDSGDETEGKRMVLPADDTFLARLEGAAARLSTQRFTMPQLEIALA
AIDKAAWLEVISPTGTGADVWQTVTASGSIEYFEVYNGQLPRCRPARAPR
HQGSLRDSVQGHKYRGGSQAL
back to top

mRNA from alignment at CM002463.1:463985..464697+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4390 ID=rna4390|Name=rna4390|organism=Nannochloropsis gaditana|type=mRNA|length=713bp|location=Sequence derived from alignment at CM002463.1:463985..464697+ (Nannochloropsis gaditana)
ATGGCTATGATCGGCTCTCCTCAGATCGTGATTCTGGATGAGCCTAGCTC
TGGAATGGACGCTGTGGCTCGTCGCTTCATGTGGAAGGTCATCAGCGACA
TCACGACAAAGCGGGGCGAATGCTGTGTGATCCTCACGACACACAGCATG
GAGGAATGTGAGGCGCTGTGCACACGCATCGGCATAATGGTGGGAGGCCG
CTTCCGGTGCATGGGGTCTGCGCAGCATCTCAAGTCGCGATACGGGATGG
GCTACCAGCTAGAAATCTCCGTCGCATTGCCACGTGGGGAGATTGTACCG
GCcagtgacgacgaggacagTGGGGACGAGACAGAGGGCAAACGAATGGT
CCTGCCGGCGGACGACACCTTTTTGGCTCGCCTCGAAGGCGCGGCGGCAC
GTCTCTCAACGCAGCGTTTCACTATGCCGCAGCTAGAGATAGCTCTAGCA
GCTATCGACAAGGCAGCGTGGCTTGAGGTTATCTCACCGACGGGCACTGG
AGCAGATGTATGGCAAACGGTGACGGCTTCAGGTAGTATAGGTGTGCGGG
AGTTTGCTGGTTGGTGCTCGTTGGAGGACCGTATGGAGAATATTTTGAGG
TTTATAATGGACAACTACCCCGATGCCGTCCTGCGAGAGCGCCAAGGCAC
CAAGGTTCGCTTCGAGATTCCGTCCAAGGACACAAATACAGGGGCGGCTC
GCAAGCTCTCTGA
back to top

Coding sequence (CDS) from alignment at CM002463.1:463985..464697+

>rna4390 ID=rna4390|Name=rna4390|organism=Nannochloropsis gaditana|type=CDS|length=1332bp|location=Sequence derived from alignment at CM002463.1:463985..464697+ (Nannochloropsis gaditana)
ATGGCTATGATCGGCTCTCCTCAGATCGTGATTCTGGATGAGCCTAGCTC
TGGAATGGACGCTGTGGCTCGTCGCTTCATGTGGAAGGTCATCAGCGACA
TCACGACAAAGCGGGGCGAATGCTGTGTGATCCTCACGACACACAGCATG
GAGGAATGTGAGGCGCTGTGCACACGCATCGGCATAATGGTGGGAGGCCG
CTTCCGGTGCATGGGGTCTGCGCAGCATCTCAAGTCGCGATACGGGATGG
GCTACCAGCTAGAAATCTCCGTCGCATTGCCACGTGGGGAGATTGTACCG
GCcagtgacgacgaggacagTGGGGACGAGACAGAGGGCAAACGAATGGT
CCTGCCGGCGGACGACACCTTTTTGGCTCGCCTCGAAGGCGCGGCGGCAC
GTCTCTCAACGCAGCGTTTCACTATGCCGCAGCTAGAGATAGCTCTAGCA
GCTATCGACAAGGCAGCGTGGCTTGAGGTTATCTCACCGACGGGCACTGG
AGCAGATGTATGGCAAACGGTGACGGCTTCAGGTAGTATAGAATATTTTG
AGGTTTATAATGGACAACTACCCCGATGCCGTCCTGCGAGAGCGCCAAGG
CACCAAGGTTCGCTTCGAGATTCCGTCCAAGGACACAAATACAGGGGCGG
CTCGCAAGCTCTCTGAATGGCTATGATCGGCTCTCCTCAGATCGTGATTC
TGGATGAGCCTAGCTCTGGAATGGACGCTGTGGCTCGTCGCTTCATGTGG
AAGGTCATCAGCGACATCACGACAAAGCGGGGCGAATGCTGTGTGATCCT
CACGACACACAGCATGGAGGAATGTGAGGCGCTGTGCACACGCATCGGCA
TAATGGTGGGAGGCCGCTTCCGGTGCATGGGGTCTGCGCAGCATCTCAAG
TCGCGATACGGGATGGGCTACCAGCTAGAAATCTCCGTCGCATTGCCACG
TGGGGAGATTGTACCGGCcagtgacgacgaggacagTGGGGACGAGACAG
AGGGCAAACGAATGGTCCTGCCGGCGGACGACACCTTTTTGGCTCGCCTC
GAAGGCGCGGCGGCACGTCTCTCAACGCAGCGTTTCACTATGCCGCAGCT
AGAGATAGCTCTAGCAGCTATCGACAAGGCAGCGTGGCTTGAGGTTATCT
CACCGACGGGCACTGGAGCAGATGTATGGCAAACGGTGACGGCTTCAGGT
AGTATAGAATATTTTGAGGTTTATAATGGACAACTACCCCGATGCCGTCC
TGCGAGAGCGCCAAGGCACCAAGGTTCGCTTCGAGATTCCGTCCAAGGAC
ACAAATACAGGGGCGGCTCGCAAGCTCTCTGA
back to top
Synonyms
Publications