EWM26293.1, cds4380 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26293.1 vs. NCBI_GenBank
Match: gi|585108295|gb|EWM26293.1| (atp-binding cassette superfamily [Nannochloropsis gaditana]) HSP 1 Score: 456.062 bits (1172), Expect = 2.454e-162 Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0
Query: 1 MAMIGSPQIVILDEPSSGMDAVARRFMWKVISDITTKRGECCVILTTHSMEECEALCTRIGIMVGGRFRCMGSAQHLKSRYGMGYQLEISVALPRGEIVPASDDEDSGDETEGKRMVLPADDTFLARLEGAAARLSTQRFTMPQLEIALAAIDKAAWLEVISPTGTGADVWQTVTASGSIEYFEVYNGQLPRCRPARAPRHQGSLRDSVQGHKYRGGSQAL 221
MAMIGSPQIVILDEPSSGMDAVARRFMWKVISDITTKRGECCVILTTHSMEECEALCTRIGIMVGGRFRCMGSAQHLKSRYGMGYQLEISVALPRGEIVPASDDEDSGDETEGKRMVLPADDTFLARLEGAAARLSTQRFTMPQLEIALAAIDKAAWLEVISPTGTGADVWQTVTASGSIEYFEVYNGQLPRCRPARAPRHQGSLRDSVQGHKYRGGSQAL
Sbjct: 1 MAMIGSPQIVILDEPSSGMDAVARRFMWKVISDITTKRGECCVILTTHSMEECEALCTRIGIMVGGRFRCMGSAQHLKSRYGMGYQLEISVALPRGEIVPASDDEDSGDETEGKRMVLPADDTFLARLEGAAARLSTQRFTMPQLEIALAAIDKAAWLEVISPTGTGADVWQTVTASGSIEYFEVYNGQLPRCRPARAPRHQGSLRDSVQGHKYRGGSQAL 221
BLAST of EWM26293.1 vs. NCBI_GenBank
Match: gi|553178451|ref|XP_005852555.1| (antibiotic transport system ATP-binding protein, partial [Nannochloropsis gaditana CCMP526] >gi|422295978|gb|EKU23277.1| antibiotic transport system ATP-binding protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 370.548 bits (950), Expect = 5.586e-123 Identity = 179/180 (99.44%), Postives = 180/180 (100.00%), Query Frame = 0
Query: 1 MAMIGSPQIVILDEPSSGMDAVARRFMWKVISDITTKRGECCVILTTHSMEECEALCTRIGIMVGGRFRCMGSAQHLKSRYGMGYQLEISVALPRGEIVPASDDEDSGDETEGKRMVLPADDTFLARLEGAAARLSTQRFTMPQLEIALAAIDKAAWLEVISPTGTGADVWQTVTASGSI 180
MAMIGSPQIVILDEPSSGMDAVARRFMWKVISDITTKRGECCVILTTHSMEECEALCTRIGIMVGGRFRCMGSAQHLKSRYGMGYQLEISVALPRGEIVPASDDEDSGDETEGKRMVLPADDTFLARLEGAAARLST+RFTMPQLEIALAAIDKAAWLEVISPTGTGADVWQTVTASGSI
Sbjct: 294 MAMIGSPQIVILDEPSSGMDAVARRFMWKVISDITTKRGECCVILTTHSMEECEALCTRIGIMVGGRFRCMGSAQHLKSRYGMGYQLEISVALPRGEIVPASDDEDSGDETEGKRMVLPADDTFLARLEGAAARLSTERFTMPQLEIALAAIDKAAWLEVISPTGTGADVWQTVTASGSI 473
BLAST of EWM26293.1 vs. NCBI_GenBank
Match: gi|553179804|ref|XP_005852765.1| (antibiotic transport system ATP-binding protein, partial [Nannochloropsis gaditana CCMP526] >gi|422295768|gb|EKU23067.1| antibiotic transport system ATP-binding protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 371.703 bits (953), Expect = 4.514e-119 Identity = 179/180 (99.44%), Postives = 180/180 (100.00%), Query Frame = 0
Query: 1 MAMIGSPQIVILDEPSSGMDAVARRFMWKVISDITTKRGECCVILTTHSMEECEALCTRIGIMVGGRFRCMGSAQHLKSRYGMGYQLEISVALPRGEIVPASDDEDSGDETEGKRMVLPADDTFLARLEGAAARLSTQRFTMPQLEIALAAIDKAAWLEVISPTGTGADVWQTVTASGSI 180
MAMIGSPQIVILDEPSSGMDAVARRFMWKVISDITTKRGECCVILTTHSMEECEALCTRIGIMVGGRFRCMGSAQHLKSRYGMGYQLEISVALPRGEIVPASDDEDSGDETEGKRMVLPADDTFLARLEGAAARLST+RFTMPQLEIALAAIDKAAWLEVISPTGTGADVWQTVTASGSI
Sbjct: 715 MAMIGSPQIVILDEPSSGMDAVARRFMWKVISDITTKRGECCVILTTHSMEECEALCTRIGIMVGGRFRCMGSAQHLKSRYGMGYQLEISVALPRGEIVPASDDEDSGDETEGKRMVLPADDTFLARLEGAAARLSTERFTMPQLEIALAAIDKAAWLEVISPTGTGADVWQTVTASGSI 894
BLAST of EWM26293.1 vs. NCBI_GenBank
Match: gi|298711719|emb|CBJ32766.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 151.754 bits (382), Expect = 1.631e-38 Identity = 84/188 (44.68%), Postives = 105/188 (55.85%), Query Frame = 0
Query: 1 MAMIGSPQIVILDEPSSGMDAVARRFMWKVISDITTKRGECCVILTTHSMEECEALCTRIGIMVGGRFRCMGSAQHLKSRYGMGYQLE--ISVALPR------GEIVPASDDEDSGDETEGKRMVLPADDTFLARLEGAAARLSTQRFTMPQLEIALAAIDKAAWLEVISPTGTGADVWQTVTASGSI 180
MAMIG PQIV LDEPS+GMD +ARRFMW VI I T+ EC +ILTTHSMEECEALC RIGIMVGGR RC+G++QHLK+R+G G+QLE + LP E+ PA++ G T G +G R + P LE +S TG GA ++ + G +
Sbjct: 1712 MAMIGDPQIVFLDEPSTGMDPMARRFMWNVIMRIVTENKECAMILTTHSMEECEALCQRIGIMVGGRLRCLGTSQHLKTRFGKGFQLEARVKAILPEETDAMMAELAPATN----GQGTLGN--------------DGGVLRAALAAAQAPDLEAE------------VSATGRGASIYHAIANQGGV 1869 HSP 2 Score: 86.2705 bits (212), Expect = 8.046e-16 Identity = 41/89 (46.07%), Postives = 56/89 (62.92%), Query Frame = 0
Query: 1 MAMIGSPQIVILDEPSSGMDAVARRFMWKVISDITTKRGECCVILTTHSMEECEALCTRIGIMVGGRFRCMGSAQHLKSRYGMGYQLEI 89
+A+IG ++V LDEP+SGMD +RRF W +I R ++LTTH M+E + L R+ IM G RC GS+ LK+ YG+GY L I
Sbjct: 843 IALIGGSKVVFLDEPTSGMDPHSRRFTWDLIRK---NREGRVIVLTTHFMDEADLLGDRVAIMADGALRCCGSSIFLKNHYGVGYNLTI 928
BLAST of EWM26293.1 vs. NCBI_GenBank
Match: gi|298711718|emb|CBJ32765.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 151.369 bits (381), Expect = 1.812e-38 Identity = 83/182 (45.60%), Postives = 102/182 (56.04%), Query Frame = 0
Query: 1 MAMIGSPQIVILDEPSSGMDAVARRFMWKVISDITTKRGECCVILTTHSMEECEALCTRIGIMVGGRFRCMGSAQHLKSRYGMGYQLEISVALPRGEIVPASDDEDSGDETEGKRMVLPADDTFLARL--EGAAARLSTQRFTMPQLEIALAAIDKAAWLEVISPTGTGADVWQTVTASGSI 180
MAMIG PQIV LDEPS+GMD +ARRFMW VI I T+ EC +ILTTHSMEECEALC RIGIMVGGR RC+G++QHLK+R+G G+QLE V E ET+ L L +G R + P+LE +SPTG GA ++ + G +
Sbjct: 1692 MAMIGDPQIVFLDEPSTGMDPMARRFMWNVIMRIVTENKECAMILTTHSMEECEALCQRIGIMVGGRLRCLGTSQHLKTRFGKGFQLEARVKAITHE------------ETDAMMATLAHATNGQGTLTNDGGVLRAALAAAQAPELEAE------------VSPTGRGASIYHAIANQGGV 1849 HSP 2 Score: 85.5001 bits (210), Expect = 1.320e-15 Identity = 41/89 (46.07%), Postives = 56/89 (62.92%), Query Frame = 0
Query: 1 MAMIGSPQIVILDEPSSGMDAVARRFMWKVISDITTKRGECCVILTTHSMEECEALCTRIGIMVGGRFRCMGSAQHLKSRYGMGYQLEI 89
+A+IG ++V LDEP+SGMD +RRF W +I R ++LTTH M+E + L R+ IM G RC GS+ LK+ YG+GY L I
Sbjct: 821 IALIGGSKVVFLDEPTSGMDPHSRRFTWDLIRKNREGR---VIVLTTHFMDEADLLGDRVAIMADGALRCCGSSIFLKNYYGVGYNLTI 906
BLAST of EWM26293.1 vs. NCBI_GenBank
Match: gi|325188031|emb|CCA22574.1| (PREDICTED: similar to Stromal antigen 1 putative [Albugo laibachii Nc14]) HSP 1 Score: 150.214 bits (378), Expect = 5.828e-38 Identity = 65/106 (61.32%), Postives = 83/106 (78.30%), Query Frame = 0
Query: 1 MAMIGSPQIVILDEPSSGMDAVARRFMWKVISDITTKRGECCVILTTHSMEECEALCTRIGIMVGGRFRCMGSAQHLKSRYGMGYQLEISVALPR-GEIVPASDDE 105
+AMIGSP+I+ LDEPS+GMD V+RRFMW VI++I+T E ++LTTHSMEECEALCTR+GIMVGGR RC+GS QHLKSRYG G +E+ + P E++ + D
Sbjct: 1717 IAMIGSPRIIFLDEPSTGMDPVSRRFMWNVIANISTHTKESTIVLTTHSMEECEALCTRVGIMVGGRLRCLGSVQHLKSRYGNGVMIEVKIQQPETAEVLKVTQDH 1822 HSP 2 Score: 79.337 bits (194), Expect = 1.864e-13 Identity = 37/89 (41.57%), Postives = 53/89 (59.55%), Query Frame = 0
Query: 1 MAMIGSPQIVILDEPSSGMDAVARRFMWKVISDITTKRGECCVILTTHSMEECEALCTRIGIMVGGRFRCMGSAQHLKSRYGMGYQLEI 89
+ ++G +V LDEP+SGMD +RR W+ + + R ++LTTH M+E + L RI IM G RC GS+ LK+RYG GY +
Sbjct: 860 ICLLGDSSLVFLDEPTSGMDPYSRRSTWETLLN---NRQNRVMVLTTHFMDEADILGDRIAIMAEGELRCCGSSLFLKNRYGAGYNFTL 945
BLAST of EWM26293.1 vs. NCBI_GenBank
Match: gi|1173927445|gb|OQR81399.1| (ATP-binding Cassette (ABC) Superfamily [Thraustotheca clavata]) HSP 1 Score: 150.214 bits (378), Expect = 5.834e-38 Identity = 62/99 (62.63%), Postives = 81/99 (81.82%), Query Frame = 0
Query: 1 MAMIGSPQIVILDEPSSGMDAVARRFMWKVISDITTKRGECCVILTTHSMEECEALCTRIGIMVGGRFRCMGSAQHLKSRYGMGYQLEISVALPRGEIV 99
+AMIGSP I+ LDEPS+GMD V+RRFMW +I+D++T E ++LTTHSMEECEALCTR+GIMVGGR RC+GS QHLKSR+G G+ ++ + +P E+V
Sbjct: 1739 IAMIGSPPIIFLDEPSTGMDPVSRRFMWDIIADVSTANKESTIVLTTHSMEECEALCTRVGIMVGGRLRCLGSVQHLKSRFGDGFMIDSKLNVPTTEMV 1837 HSP 2 Score: 83.9593 bits (206), Expect = 4.973e-15 Identity = 43/98 (43.88%), Postives = 62/98 (63.27%), Query Frame = 0
Query: 1 MAMIGSPQIVILDEPSSGMDAVARRFMWKVISDITTKRGECCVILTTHSMEECEALCTRIGIMVGGRFRCMGSAQHLKSRYGMGYQLEI-SVALPRGE 97
+A++G ++V LDEP+SGMD +RR W++I + R ++LTTH M+E + L RI IM G+ +C GS+ LK+R+G GY L I AL GE
Sbjct: 887 IALLGDSRLVFLDEPTSGMDPYSRRSTWELILNNRMNR---VIVLTTHFMDEADILGDRIAIMAEGQVKCCGSSLFLKNRFGAGYNLTIVKEALVNGE 981
BLAST of EWM26293.1 vs. NCBI_GenBank
Match: gi|698793826|ref|XP_009829945.1| (hypothetical protein H257_06433 [Aphanomyces astaci] >gi|574115512|gb|ETV80998.1| hypothetical protein H257_06433 [Aphanomyces astaci]) HSP 1 Score: 149.058 bits (375), Expect = 1.187e-37 Identity = 63/93 (67.74%), Postives = 77/93 (82.80%), Query Frame = 0
Query: 1 MAMIGSPQIVILDEPSSGMDAVARRFMWKVISDITTKRGECCVILTTHSMEECEALCTRIGIMVGGRFRCMGSAQHLKSRYGMGYQLEISVAL 93
MAMIGSP I+ LDEPS+GMD V+RRFMW VI+D++T + E ++LTTHSMEECEALCTR+GIMVGGR RC+GS QHLKSR+G G+ + V L
Sbjct: 1677 MAMIGSPPIIFLDEPSTGMDPVSRRFMWDVIADVSTTQKESTIVLTTHSMEECEALCTRVGIMVGGRLRCLGSVQHLKSRFGDGFMVHAKVEL 1769 HSP 2 Score: 87.0409 bits (214), Expect = 4.045e-16 Identity = 40/90 (44.44%), Postives = 60/90 (66.67%), Query Frame = 0
Query: 1 MAMIGSPQIVILDEPSSGMDAVARRFMWKVISDITTKRGECCVILTTHSMEECEALCTRIGIMVGGRFRCMGSAQHLKSRYGMGYQLEIS 90
+A++G ++V LDEP+SGMD +RR W++I + R ++LTTH M+E + L RI IM G+ RC GS+ +LKS++G GY L I+
Sbjct: 838 IALLGDSKLVFLDEPTSGMDPYSRRSTWELILNNRMNR---VIVLTTHFMDEADILGDRIAIMAEGKLRCCGSSLYLKSKFGAGYTLTIA 924
BLAST of EWM26293.1 vs. NCBI_GenBank
Match: gi|635363134|emb|CCI48277.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 148.673 bits (374), Expect = 1.601e-37 Identity = 68/113 (60.18%), Postives = 85/113 (75.22%), Query Frame = 0
Query: 1 MAMIGSPQIVILDEPSSGMDAVARRFMWKVISDITTKRGECCVILTTHSMEECEALCTRIGIMVGGRFRCMGSAQHLKSRYGMGYQLEISVALPR-GEIVPASDDEDSGDETE 112
+AMIGSP+I+ LDEPS+GMD V+RRFMW VI++I+T E ++LTTHSMEECEALCTR+GIMVGGR RC+GS QHLKSRYG G LE+ + P E++ + D E E
Sbjct: 1685 IAMIGSPRIIFLDEPSTGMDPVSRRFMWNVIANISTHTKESTIVLTTHSMEECEALCTRVGIMVGGRLRCLGSVQHLKSRYGNGVMLELKLQQPTMSEVLKLAQDRFQLSEGE 1797 HSP 2 Score: 80.8777 bits (198), Expect = 5.206e-14 Identity = 37/89 (41.57%), Postives = 54/89 (60.67%), Query Frame = 0
Query: 1 MAMIGSPQIVILDEPSSGMDAVARRFMWKVISDITTKRGECCVILTTHSMEECEALCTRIGIMVGGRFRCMGSAQHLKSRYGMGYQLEI 89
++++G +V LDEP+SGMD +RR W+ + + R ++LTTH M+E + L RI IM G RC GS+ LK+RYG GY +
Sbjct: 828 ISLLGDSSLVFLDEPTSGMDPYSRRSTWETLLN---NRQNRVIVLTTHFMDEADILGDRIAIMAEGELRCCGSSLFLKNRYGAGYNFTL 913
BLAST of EWM26293.1 vs. NCBI_GenBank
Match: gi|673039317|ref|XP_008873619.1| (hypothetical protein H310_09348 [Aphanomyces invadans] >gi|574471049|gb|ETV98058.1| hypothetical protein H310_09348 [Aphanomyces invadans]) HSP 1 Score: 148.288 bits (373), Expect = 2.037e-37 Identity = 63/101 (62.38%), Postives = 80/101 (79.21%), Query Frame = 0
Query: 1 MAMIGSPQIVILDEPSSGMDAVARRFMWKVISDITTKRGECCVILTTHSMEECEALCTRIGIMVGGRFRCMGSAQHLKSRYGMGYQLEISVALPRGEIVPA 101
MAMIGSP I+ LDEPS+GMD V+RRFMW VI+D++T + E ++LTTHSMEECEALCTR+GIMVGGR RC+GS QHLKSR+G G+ + + L + + A
Sbjct: 1676 MAMIGSPPIIFLDEPSTGMDPVSRRFMWDVIADVSTTQKESTIVLTTHSMEECEALCTRVGIMVGGRLRCLGSVQHLKSRFGDGFMVHAKLELATRDAITA 1776 HSP 2 Score: 86.6557 bits (213), Expect = 4.622e-16 Identity = 42/101 (41.58%), Postives = 65/101 (64.36%), Query Frame = 0
Query: 1 MAMIGSPQIVILDEPSSGMDAVARRFMWKVISDITTKRGECCVILTTHSMEECEALCTRIGIMVGGRFRCMGSAQHLKSRYGMGYQLEIS---VALPRGEI 98
+A++G Q+V LDEP+SGMD +RR W++I + R ++LTTH M+E + L RI IM G+ RC GS+ +LK+++G GY L ++ ++ P EI
Sbjct: 839 IALLGDSQLVFLDEPTSGMDPYSRRSTWELILNNRMNR---VIVLTTHFMDEADILGDRIAIMAEGKLRCCGSSLYLKNKFGAGYTLTLAKTNLSTPSHEI 936 The following BLAST results are available for this feature:
BLAST of EWM26293.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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