EWM26293.1, cds4380 (CDS) Nannochloropsis gaditana

Overview
NameEWM26293.1
Unique Namecds4380
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:463985..464525 +
Alignment locationCM002463.1:464573..464697 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26293.1
Productatp-binding cassette superfamily
Orig transcript idgnl|cribi|Naga_102378g1.5986.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:463985..464525 +
CM002463.1supercontigCM002463.1:464573..464697 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0000166nucleotide binding
GO:0005215transporter activity
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR026082ABC_A
IPR027417P-loop_NTPase
Homology
BLAST of EWM26293.1 vs. NCBI_GenBank
Match: gi|585108295|gb|EWM26293.1| (atp-binding cassette superfamily [Nannochloropsis gaditana])

HSP 1 Score: 456.062 bits (1172), Expect = 2.454e-162
Identity = 221/221 (100.00%), Postives = 221/221 (100.00%), Query Frame = 0
Query:    1 MAMIGSPQIVILDEPSSGMDAVARRFMWKVISDITTKRGECCVILTTHSMEECEALCTRIGIMVGGRFRCMGSAQHLKSRYGMGYQLEISVALPRGEIVPASDDEDSGDETEGKRMVLPADDTFLARLEGAAARLSTQRFTMPQLEIALAAIDKAAWLEVISPTGTGADVWQTVTASGSIEYFEVYNGQLPRCRPARAPRHQGSLRDSVQGHKYRGGSQAL 221
            MAMIGSPQIVILDEPSSGMDAVARRFMWKVISDITTKRGECCVILTTHSMEECEALCTRIGIMVGGRFRCMGSAQHLKSRYGMGYQLEISVALPRGEIVPASDDEDSGDETEGKRMVLPADDTFLARLEGAAARLSTQRFTMPQLEIALAAIDKAAWLEVISPTGTGADVWQTVTASGSIEYFEVYNGQLPRCRPARAPRHQGSLRDSVQGHKYRGGSQAL
Sbjct:    1 MAMIGSPQIVILDEPSSGMDAVARRFMWKVISDITTKRGECCVILTTHSMEECEALCTRIGIMVGGRFRCMGSAQHLKSRYGMGYQLEISVALPRGEIVPASDDEDSGDETEGKRMVLPADDTFLARLEGAAARLSTQRFTMPQLEIALAAIDKAAWLEVISPTGTGADVWQTVTASGSIEYFEVYNGQLPRCRPARAPRHQGSLRDSVQGHKYRGGSQAL 221          
BLAST of EWM26293.1 vs. NCBI_GenBank
Match: gi|553178451|ref|XP_005852555.1| (antibiotic transport system ATP-binding protein, partial [Nannochloropsis gaditana CCMP526] >gi|422295978|gb|EKU23277.1| antibiotic transport system ATP-binding protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 370.548 bits (950), Expect = 5.586e-123
Identity = 179/180 (99.44%), Postives = 180/180 (100.00%), Query Frame = 0
Query:    1 MAMIGSPQIVILDEPSSGMDAVARRFMWKVISDITTKRGECCVILTTHSMEECEALCTRIGIMVGGRFRCMGSAQHLKSRYGMGYQLEISVALPRGEIVPASDDEDSGDETEGKRMVLPADDTFLARLEGAAARLSTQRFTMPQLEIALAAIDKAAWLEVISPTGTGADVWQTVTASGSI 180
            MAMIGSPQIVILDEPSSGMDAVARRFMWKVISDITTKRGECCVILTTHSMEECEALCTRIGIMVGGRFRCMGSAQHLKSRYGMGYQLEISVALPRGEIVPASDDEDSGDETEGKRMVLPADDTFLARLEGAAARLST+RFTMPQLEIALAAIDKAAWLEVISPTGTGADVWQTVTASGSI
Sbjct:  294 MAMIGSPQIVILDEPSSGMDAVARRFMWKVISDITTKRGECCVILTTHSMEECEALCTRIGIMVGGRFRCMGSAQHLKSRYGMGYQLEISVALPRGEIVPASDDEDSGDETEGKRMVLPADDTFLARLEGAAARLSTERFTMPQLEIALAAIDKAAWLEVISPTGTGADVWQTVTASGSI 473          
BLAST of EWM26293.1 vs. NCBI_GenBank
Match: gi|553179804|ref|XP_005852765.1| (antibiotic transport system ATP-binding protein, partial [Nannochloropsis gaditana CCMP526] >gi|422295768|gb|EKU23067.1| antibiotic transport system ATP-binding protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 371.703 bits (953), Expect = 4.514e-119
Identity = 179/180 (99.44%), Postives = 180/180 (100.00%), Query Frame = 0
Query:    1 MAMIGSPQIVILDEPSSGMDAVARRFMWKVISDITTKRGECCVILTTHSMEECEALCTRIGIMVGGRFRCMGSAQHLKSRYGMGYQLEISVALPRGEIVPASDDEDSGDETEGKRMVLPADDTFLARLEGAAARLSTQRFTMPQLEIALAAIDKAAWLEVISPTGTGADVWQTVTASGSI 180
            MAMIGSPQIVILDEPSSGMDAVARRFMWKVISDITTKRGECCVILTTHSMEECEALCTRIGIMVGGRFRCMGSAQHLKSRYGMGYQLEISVALPRGEIVPASDDEDSGDETEGKRMVLPADDTFLARLEGAAARLST+RFTMPQLEIALAAIDKAAWLEVISPTGTGADVWQTVTASGSI
Sbjct:  715 MAMIGSPQIVILDEPSSGMDAVARRFMWKVISDITTKRGECCVILTTHSMEECEALCTRIGIMVGGRFRCMGSAQHLKSRYGMGYQLEISVALPRGEIVPASDDEDSGDETEGKRMVLPADDTFLARLEGAAARLSTERFTMPQLEIALAAIDKAAWLEVISPTGTGADVWQTVTASGSI 894          
BLAST of EWM26293.1 vs. NCBI_GenBank
Match: gi|298711719|emb|CBJ32766.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 151.754 bits (382), Expect = 1.631e-38
Identity = 84/188 (44.68%), Postives = 105/188 (55.85%), Query Frame = 0
Query:    1 MAMIGSPQIVILDEPSSGMDAVARRFMWKVISDITTKRGECCVILTTHSMEECEALCTRIGIMVGGRFRCMGSAQHLKSRYGMGYQLE--ISVALPR------GEIVPASDDEDSGDETEGKRMVLPADDTFLARLEGAAARLSTQRFTMPQLEIALAAIDKAAWLEVISPTGTGADVWQTVTASGSI 180
            MAMIG PQIV LDEPS+GMD +ARRFMW VI  I T+  EC +ILTTHSMEECEALC RIGIMVGGR RC+G++QHLK+R+G G+QLE  +   LP        E+ PA++    G  T G               +G   R +      P LE              +S TG GA ++  +   G +
Sbjct: 1712 MAMIGDPQIVFLDEPSTGMDPMARRFMWNVIMRIVTENKECAMILTTHSMEECEALCQRIGIMVGGRLRCLGTSQHLKTRFGKGFQLEARVKAILPEETDAMMAELAPATN----GQGTLGN--------------DGGVLRAALAAAQAPDLEAE------------VSATGRGASIYHAIANQGGV 1869          

HSP 2 Score: 86.2705 bits (212), Expect = 8.046e-16
Identity = 41/89 (46.07%), Postives = 56/89 (62.92%), Query Frame = 0
Query:    1 MAMIGSPQIVILDEPSSGMDAVARRFMWKVISDITTKRGECCVILTTHSMEECEALCTRIGIMVGGRFRCMGSAQHLKSRYGMGYQLEI 89
            +A+IG  ++V LDEP+SGMD  +RRF W +I      R    ++LTTH M+E + L  R+ IM  G  RC GS+  LK+ YG+GY L I
Sbjct:  843 IALIGGSKVVFLDEPTSGMDPHSRRFTWDLIRK---NREGRVIVLTTHFMDEADLLGDRVAIMADGALRCCGSSIFLKNHYGVGYNLTI 928          
BLAST of EWM26293.1 vs. NCBI_GenBank
Match: gi|298711718|emb|CBJ32765.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 151.369 bits (381), Expect = 1.812e-38
Identity = 83/182 (45.60%), Postives = 102/182 (56.04%), Query Frame = 0
Query:    1 MAMIGSPQIVILDEPSSGMDAVARRFMWKVISDITTKRGECCVILTTHSMEECEALCTRIGIMVGGRFRCMGSAQHLKSRYGMGYQLEISVALPRGEIVPASDDEDSGDETEGKRMVLPADDTFLARL--EGAAARLSTQRFTMPQLEIALAAIDKAAWLEVISPTGTGADVWQTVTASGSI 180
            MAMIG PQIV LDEPS+GMD +ARRFMW VI  I T+  EC +ILTTHSMEECEALC RIGIMVGGR RC+G++QHLK+R+G G+QLE  V     E            ET+     L         L  +G   R +      P+LE              +SPTG GA ++  +   G +
Sbjct: 1692 MAMIGDPQIVFLDEPSTGMDPMARRFMWNVIMRIVTENKECAMILTTHSMEECEALCQRIGIMVGGRLRCLGTSQHLKTRFGKGFQLEARVKAITHE------------ETDAMMATLAHATNGQGTLTNDGGVLRAALAAAQAPELEAE------------VSPTGRGASIYHAIANQGGV 1849          

HSP 2 Score: 85.5001 bits (210), Expect = 1.320e-15
Identity = 41/89 (46.07%), Postives = 56/89 (62.92%), Query Frame = 0
Query:    1 MAMIGSPQIVILDEPSSGMDAVARRFMWKVISDITTKRGECCVILTTHSMEECEALCTRIGIMVGGRFRCMGSAQHLKSRYGMGYQLEI 89
            +A+IG  ++V LDEP+SGMD  +RRF W +I      R    ++LTTH M+E + L  R+ IM  G  RC GS+  LK+ YG+GY L I
Sbjct:  821 IALIGGSKVVFLDEPTSGMDPHSRRFTWDLIRKNREGR---VIVLTTHFMDEADLLGDRVAIMADGALRCCGSSIFLKNYYGVGYNLTI 906          
BLAST of EWM26293.1 vs. NCBI_GenBank
Match: gi|325188031|emb|CCA22574.1| (PREDICTED: similar to Stromal antigen 1 putative [Albugo laibachii Nc14])

HSP 1 Score: 150.214 bits (378), Expect = 5.828e-38
Identity = 65/106 (61.32%), Postives = 83/106 (78.30%), Query Frame = 0
Query:    1 MAMIGSPQIVILDEPSSGMDAVARRFMWKVISDITTKRGECCVILTTHSMEECEALCTRIGIMVGGRFRCMGSAQHLKSRYGMGYQLEISVALPR-GEIVPASDDE 105
            +AMIGSP+I+ LDEPS+GMD V+RRFMW VI++I+T   E  ++LTTHSMEECEALCTR+GIMVGGR RC+GS QHLKSRYG G  +E+ +  P   E++  + D 
Sbjct: 1717 IAMIGSPRIIFLDEPSTGMDPVSRRFMWNVIANISTHTKESTIVLTTHSMEECEALCTRVGIMVGGRLRCLGSVQHLKSRYGNGVMIEVKIQQPETAEVLKVTQDH 1822          

HSP 2 Score: 79.337 bits (194), Expect = 1.864e-13
Identity = 37/89 (41.57%), Postives = 53/89 (59.55%), Query Frame = 0
Query:    1 MAMIGSPQIVILDEPSSGMDAVARRFMWKVISDITTKRGECCVILTTHSMEECEALCTRIGIMVGGRFRCMGSAQHLKSRYGMGYQLEI 89
            + ++G   +V LDEP+SGMD  +RR  W+ + +    R    ++LTTH M+E + L  RI IM  G  RC GS+  LK+RYG GY   +
Sbjct:  860 ICLLGDSSLVFLDEPTSGMDPYSRRSTWETLLN---NRQNRVMVLTTHFMDEADILGDRIAIMAEGELRCCGSSLFLKNRYGAGYNFTL 945          
BLAST of EWM26293.1 vs. NCBI_GenBank
Match: gi|1173927445|gb|OQR81399.1| (ATP-binding Cassette (ABC) Superfamily [Thraustotheca clavata])

HSP 1 Score: 150.214 bits (378), Expect = 5.834e-38
Identity = 62/99 (62.63%), Postives = 81/99 (81.82%), Query Frame = 0
Query:    1 MAMIGSPQIVILDEPSSGMDAVARRFMWKVISDITTKRGECCVILTTHSMEECEALCTRIGIMVGGRFRCMGSAQHLKSRYGMGYQLEISVALPRGEIV 99
            +AMIGSP I+ LDEPS+GMD V+RRFMW +I+D++T   E  ++LTTHSMEECEALCTR+GIMVGGR RC+GS QHLKSR+G G+ ++  + +P  E+V
Sbjct: 1739 IAMIGSPPIIFLDEPSTGMDPVSRRFMWDIIADVSTANKESTIVLTTHSMEECEALCTRVGIMVGGRLRCLGSVQHLKSRFGDGFMIDSKLNVPTTEMV 1837          

HSP 2 Score: 83.9593 bits (206), Expect = 4.973e-15
Identity = 43/98 (43.88%), Postives = 62/98 (63.27%), Query Frame = 0
Query:    1 MAMIGSPQIVILDEPSSGMDAVARRFMWKVISDITTKRGECCVILTTHSMEECEALCTRIGIMVGGRFRCMGSAQHLKSRYGMGYQLEI-SVALPRGE 97
            +A++G  ++V LDEP+SGMD  +RR  W++I +    R    ++LTTH M+E + L  RI IM  G+ +C GS+  LK+R+G GY L I   AL  GE
Sbjct:  887 IALLGDSRLVFLDEPTSGMDPYSRRSTWELILNNRMNR---VIVLTTHFMDEADILGDRIAIMAEGQVKCCGSSLFLKNRFGAGYNLTIVKEALVNGE 981          
BLAST of EWM26293.1 vs. NCBI_GenBank
Match: gi|698793826|ref|XP_009829945.1| (hypothetical protein H257_06433 [Aphanomyces astaci] >gi|574115512|gb|ETV80998.1| hypothetical protein H257_06433 [Aphanomyces astaci])

HSP 1 Score: 149.058 bits (375), Expect = 1.187e-37
Identity = 63/93 (67.74%), Postives = 77/93 (82.80%), Query Frame = 0
Query:    1 MAMIGSPQIVILDEPSSGMDAVARRFMWKVISDITTKRGECCVILTTHSMEECEALCTRIGIMVGGRFRCMGSAQHLKSRYGMGYQLEISVAL 93
            MAMIGSP I+ LDEPS+GMD V+RRFMW VI+D++T + E  ++LTTHSMEECEALCTR+GIMVGGR RC+GS QHLKSR+G G+ +   V L
Sbjct: 1677 MAMIGSPPIIFLDEPSTGMDPVSRRFMWDVIADVSTTQKESTIVLTTHSMEECEALCTRVGIMVGGRLRCLGSVQHLKSRFGDGFMVHAKVEL 1769          

HSP 2 Score: 87.0409 bits (214), Expect = 4.045e-16
Identity = 40/90 (44.44%), Postives = 60/90 (66.67%), Query Frame = 0
Query:    1 MAMIGSPQIVILDEPSSGMDAVARRFMWKVISDITTKRGECCVILTTHSMEECEALCTRIGIMVGGRFRCMGSAQHLKSRYGMGYQLEIS 90
            +A++G  ++V LDEP+SGMD  +RR  W++I +    R    ++LTTH M+E + L  RI IM  G+ RC GS+ +LKS++G GY L I+
Sbjct:  838 IALLGDSKLVFLDEPTSGMDPYSRRSTWELILNNRMNR---VIVLTTHFMDEADILGDRIAIMAEGKLRCCGSSLYLKSKFGAGYTLTIA 924          
BLAST of EWM26293.1 vs. NCBI_GenBank
Match: gi|635363134|emb|CCI48277.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 148.673 bits (374), Expect = 1.601e-37
Identity = 68/113 (60.18%), Postives = 85/113 (75.22%), Query Frame = 0
Query:    1 MAMIGSPQIVILDEPSSGMDAVARRFMWKVISDITTKRGECCVILTTHSMEECEALCTRIGIMVGGRFRCMGSAQHLKSRYGMGYQLEISVALPR-GEIVPASDDEDSGDETE 112
            +AMIGSP+I+ LDEPS+GMD V+RRFMW VI++I+T   E  ++LTTHSMEECEALCTR+GIMVGGR RC+GS QHLKSRYG G  LE+ +  P   E++  + D     E E
Sbjct: 1685 IAMIGSPRIIFLDEPSTGMDPVSRRFMWNVIANISTHTKESTIVLTTHSMEECEALCTRVGIMVGGRLRCLGSVQHLKSRYGNGVMLELKLQQPTMSEVLKLAQDRFQLSEGE 1797          

HSP 2 Score: 80.8777 bits (198), Expect = 5.206e-14
Identity = 37/89 (41.57%), Postives = 54/89 (60.67%), Query Frame = 0
Query:    1 MAMIGSPQIVILDEPSSGMDAVARRFMWKVISDITTKRGECCVILTTHSMEECEALCTRIGIMVGGRFRCMGSAQHLKSRYGMGYQLEI 89
            ++++G   +V LDEP+SGMD  +RR  W+ + +    R    ++LTTH M+E + L  RI IM  G  RC GS+  LK+RYG GY   +
Sbjct:  828 ISLLGDSSLVFLDEPTSGMDPYSRRSTWETLLN---NRQNRVIVLTTHFMDEADILGDRIAIMAEGELRCCGSSLFLKNRYGAGYNFTL 913          
BLAST of EWM26293.1 vs. NCBI_GenBank
Match: gi|673039317|ref|XP_008873619.1| (hypothetical protein H310_09348 [Aphanomyces invadans] >gi|574471049|gb|ETV98058.1| hypothetical protein H310_09348 [Aphanomyces invadans])

HSP 1 Score: 148.288 bits (373), Expect = 2.037e-37
Identity = 63/101 (62.38%), Postives = 80/101 (79.21%), Query Frame = 0
Query:    1 MAMIGSPQIVILDEPSSGMDAVARRFMWKVISDITTKRGECCVILTTHSMEECEALCTRIGIMVGGRFRCMGSAQHLKSRYGMGYQLEISVALPRGEIVPA 101
            MAMIGSP I+ LDEPS+GMD V+RRFMW VI+D++T + E  ++LTTHSMEECEALCTR+GIMVGGR RC+GS QHLKSR+G G+ +   + L   + + A
Sbjct: 1676 MAMIGSPPIIFLDEPSTGMDPVSRRFMWDVIADVSTTQKESTIVLTTHSMEECEALCTRVGIMVGGRLRCLGSVQHLKSRFGDGFMVHAKLELATRDAITA 1776          

HSP 2 Score: 86.6557 bits (213), Expect = 4.622e-16
Identity = 42/101 (41.58%), Postives = 65/101 (64.36%), Query Frame = 0
Query:    1 MAMIGSPQIVILDEPSSGMDAVARRFMWKVISDITTKRGECCVILTTHSMEECEALCTRIGIMVGGRFRCMGSAQHLKSRYGMGYQLEIS---VALPRGEI 98
            +A++G  Q+V LDEP+SGMD  +RR  W++I +    R    ++LTTH M+E + L  RI IM  G+ RC GS+ +LK+++G GY L ++   ++ P  EI
Sbjct:  839 IALLGDSQLVFLDEPTSGMDPYSRRSTWELILNNRMNR---VIVLTTHFMDEADILGDRIAIMAEGKLRCCGSSLYLKNKFGAGYTLTLAKTNLSTPSHEI 936          
The following BLAST results are available for this feature:
BLAST of EWM26293.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108295|gb|EWM26293.1|2.454e-162100.00atp-binding cassette superfamily [Nannochloropsis ... [more]
gi|553178451|ref|XP_005852555.1|5.586e-12399.44antibiotic transport system ATP-binding protein, p... [more]
gi|553179804|ref|XP_005852765.1|4.514e-11999.44antibiotic transport system ATP-binding protein, p... [more]
gi|298711719|emb|CBJ32766.1|1.631e-3844.68conserved unknown protein [Ectocarpus siliculosus][more]
gi|298711718|emb|CBJ32765.1|1.812e-3845.60conserved unknown protein [Ectocarpus siliculosus][more]
gi|325188031|emb|CCA22574.1|5.828e-3861.32PREDICTED: similar to Stromal antigen 1 putative [... [more]
gi|1173927445|gb|OQR81399.1|5.834e-3862.63ATP-binding Cassette (ABC) Superfamily [Thraustoth... [more]
gi|698793826|ref|XP_009829945.1|1.187e-3767.74hypothetical protein H257_06433 [Aphanomyces astac... [more]
gi|635363134|emb|CCI48277.1|1.601e-3760.18unnamed protein product [Albugo candida][more]
gi|673039317|ref|XP_008873619.1|2.037e-3762.38hypothetical protein H310_09348 [Aphanomyces invad... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4390rna4390Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications