rna439, rna439 (mRNA) Nannochloropsis gaditana

Overview
Namerna439
Unique Namerna439
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1442
Alignment locationCM002455.1:1084818..1086034 -

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Properties
Property NameValue
Product60s ribosomal protein l37a
Orig transcript idgnl|cribi|Naga_100003g42.1857.mrna
Orig protein idgnl|cribi|Naga_100003g42.1857
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1084818..1086034 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100003g42gene423Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna439rna439-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30340.1cds439Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna439 ID=rna439|Name=rna439|organism=Nannochloropsis gaditana|type=mRNA|length=1442bp
CAATTTTGCCATTGAAATGATCAAAACGCGCACATTCACTGTATCATACG
CATTTTTCCCATGTCCTCTACCCTTTTCAGAGACCTCCGCCGGCTTTTTG
GTCTTGCTGGCAGCTTTCATGAGACGATGTGCAGTCCTTGCTAGTAGTGA
CCGAATTTTAGGCTAGAACTTCCCGATCTGCATGCGTCTAAACGGGCACA
CAACTACTCGACCGTCTCCTACCTCGCCGTGACATTCAAATACCATTCTG
TCAACGCAAGTTCAAAGTCTTGTTCGAAGGGGTAGTCTAGTTCTACTCCG
ACTTCGGGGAGGCGCGGAGCCGAATCTGCTGTGAATCCGTCACTCACGCT
TCTGTGATGGTCCTCGCACCTTCACTCCTTTACCTCTCTCGAGCGCCCTT
CACGCTTTCCACCCTCGTCGCCTTGACCTACTTATTTTTCCCGCGGTTTG
GCATGTGGCAAATCGATTCGTTGCGGTATTCCTCCATGACCATCTCCCCT
TGGGACCTCGCCATCTCCTTGGAAATGGATGTAGGGGTGTCTATGTTCAA
CCCTAACCACATCAACTCACGTTTACACAACGCAACACTGGATATCTATC
GCGTCCAACCCACGCATATCAGTGGGGCACACCAGGCGCCGACCTACGGA
ACAAGCTTCGGGGTAGCCCGAACGCATTTTCACGAAGTCCCCAGACGGGA
TACTTTTTATTTGGATAGCCACGTTTCTATTGTTCGTCTCCCTTTCGCTG
TGCTCTGCTCCTTCATGAGAGAACTGCTCCTGAACAAGGGCGTGGTCAAA
ATGAGGGGGGTGGGGCAGGCCTGGATCTCGGCAGCGGCGCAAGACGTGAC
AGTGTTGGTCGACTGCTTCCAGCATGTGCAGCCTTTTCCGCATCCGGGTC
GCATTGTGCATACTGCTTGTAATTTTAAGCTGGCTAATGGCGGGGGTATG
AATGGATCACTGCTGGATTTACTCCAGCTGCAGTTGGGAACCGAGTGGGG
GGAGATCCGTGGGCGCAAGAAGCAGCAGGGACACAAGGCGCGGAAGAGCG
TACGTGCGAAGGAAGAGATTTGTGACGCCACCATGATTAGAGGGGTAATC
GCAGAAGTACAGGCGTGCGAAGGATTGTGACCAAGGATCAGGCGGGAGCA
CAATTTTTGGAGGGATCATGTTTTTAATAGGGAGAACGGCTACTTGTTCA
TGCCATTGCATTTTCGGAATGTAACATTTTGACCGTCTTGGAAAGCAGTG
GATTTTAACCATTTTTGACTGAAGTCGACAGGAATCTTTTGGGTGGGGAG
GAGCCAGTTTTATATCTCTAGCCAACACTGTGTATGGCAGCCAGTATTCT
ACTTGGTATGCAATGTATTTTGGCTTCTTTTCAGCTAACATAGTAGAGTC
CGCCGGGAAAAGCTCCAAAGAAATGTAACTGCAATCTTCTGT
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protein sequence of rna439

>rna439-protein ID=rna439-protein|Name=rna439|organism=Nannochloropsis gaditana|type=polypeptide|length=94bp
MGKRTKKVGICGKYGTRYGASLRKIIKKIEISQHSKYTCVFCGKDNVKRE
VVGIWKCGSCKKSMAGGAYTLSTAAAVQVRSTLARLRKAKAEAV
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mRNA from alignment at CM002455.1:1084818..1086034-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna439 ID=rna439|Name=rna439|organism=Nannochloropsis gaditana|type=mRNA|length=1217bp|location=Sequence derived from alignment at CM002455.1:1084818..1086034- (Nannochloropsis gaditana)
CGCCTCCCCGTTCGCGTGTGGTGGTAAAGCACTGGCGAGCCGCACCCCGC
GCATGGTAATGGTAGCACGGGTTTTGAGGATGGTAGACGGGGCGGTGGCA
GTTTGGTTGTGAGGCTGTTGTCGTCCAGGGGCCCGCTCCTTATTTTCCTT
TTCCTGTGTGGCAACGGACGGCTGTCGAGCATCGCGTGCACCGCCCTCCA
CGGGCAAGCTAGGCCTTCCCTTTTTTCTCTCTTATTGTCGTCACGGTGAT
CAACGACATGTGGCATCAAATGTGAACTGAGTGCAATGCAGGATGGCATG
ACTGTCGTCCTGCTGGAATAGCGACAATGGTGGGTTTATGGAATCGGCAT
CATCCGTGCTGTCGTTCTCACGCTTCTTCATACGCATACCACACACGCTA
CATCCTTGTTTTCCTTACACCCGTCATATCTATCGACCTTAAACTTGTCA
TCAGTCACCATGGTACGTTGTCTTGGTCGTTTTCTAGGGGAAAAAGTGGG
AAAATTGTGAGAGGCGTTTGTAAGAAACAAAACGACAGAAGGCACGTAAT
GAAGCGTGGAACGCATGTTATCCTGTGTAAGAGGAATCAAGTGCAGCTCA
CCCAGGATTTATGACGACAATTGCTTATCATCTACACGTGTCTACTCCCG
ACCTTTTGGCCTAACAAGAATTGACACCCACATCTGTAATTAAATTTGAA
CAGGGAAAGCGCACTAAGAAAGTAGGAATTTGCGGGAAGTATGGTACGCG
ATACGGAGCTTCCCTGCGAAAGATTATCAAAAAGATTGAAATATCACAGC
ATTCCAAGTACACGTGCGTCTTTTGCGGGAAGGACAACGTAAAGCGGGAA
GTGGTGGGCATCTGGAAGTGCGGTTCATGCAAGAAGAGCATGGCGGGCGG
TGCCTACACGCTTTCCACTGCAGCTGCGGTCCAAGTGCGATCAACACTCG
CTCGCCTACGCAAGGCTAAGGCCGAGGCCGTCTAAAGTCCTTGATAGCGA
AAAAGATGGAAGGCATGGCAAGGGAAGGAGGGGGGAGGGACGGGATCGGG
AACAGCAGAGTAGCGCAAGCGTGGCGTGAGGGCGTGGGGGTCTGGTTTCA
CAACGGAATCTACGGAAGACGACAGTTATGCTTGAGAAACTCTGCACCTT
AGAAGAAGAATCATGCTTGAGAAACTCTGCACCTTAGAAGAAGAATCTCT
CACCTATTTTAATTGTG
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Coding sequence (CDS) from alignment at CM002455.1:1084818..1086034-

>rna439 ID=rna439|Name=rna439|organism=Nannochloropsis gaditana|type=CDS|length=570bp|location=Sequence derived from alignment at CM002455.1:1084818..1086034- (Nannochloropsis gaditana)
GGAAAGCGCACTAAGAAAGTAGGAATTTGCGGGAAGTATGGTACGCGATA
CGGAGCTTCCCTGCGAAAGATTATCAAAAAGATTGAAATATCACAGCATT
CCAAGTACACGTGCGTCTTTTGCGGGAAGGACAACGTAAAGCGGGAAGTG
GTGGGCATCTGGAAGTGCGGTTCATGCAAGAAGAGCATGGCGGGCGGTGC
CTACACGCTTTCCACTGCAGCTGCGGTCCAAGTGCGATCAACACTCGCTC
GCCTACGCAAGGCTAAGGCCGAGGCCGTCTAAATGGGAAAGCGCACTAAG
AAAGTAGGAATTTGCGGGAAGTATGGTACGCGATACGGAGCTTCCCTGCG
AAAGATTATCAAAAAGATTGAAATATCACAGCATTCCAAGTACACGTGCG
TCTTTTGCGGGAAGGACAACGTAAAGCGGGAAGTGGTGGGCATCTGGAAG
TGCGGTTCATGCAAGAAGAGCATGGCGGGCGGTGCCTACACGCTTTCCAC
TGCAGCTGCGGTCCAAGTGCGATCAACACTCGCTCGCCTACGCAAGGCTA
AGGCCGAGGCCGTCTAAATG
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Synonyms
Publications