EWM30340.1, cds439 (CDS) Nannochloropsis gaditana

Overview
NameEWM30340.1
Unique Namecds439
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:1085573..1085575 -
Alignment locationCM002455.1:1085050..1085331 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30340.1
Product60s ribosomal protein l37a
Orig transcript idgnl|cribi|Naga_100003g42.1857.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1085573..1085575 -
CM002455.1supercontigCM002455.1:1085050..1085331 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR011332Ribosomal_zn-bd
IPR002674Ribosomal_L37ae
IPR011331Ribosomal_L37ae/L37e
Homology
BLAST of EWM30340.1 vs. NCBI_GenBank
Match: gi|585112999|gb|EWM30340.1| (60s ribosomal protein l37a [Nannochloropsis gaditana])

HSP 1 Score: 186.037 bits (471), Expect = 1.250e-59
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0
Query:    1 MGKRTKKVGICGKYGTRYGASLRKIIKKIEISQHSKYTCVFCGKDNVKREVVGIWKCGSCKKSMAGGAYTLSTAAAVQVRSTLARLRKAKAEAV 94
            MGKRTKKVGICGKYGTRYGASLRKIIKKIEISQHSKYTCVFCGKDNVKREVVGIWKCGSCKKSMAGGAYTLSTAAAVQVRSTLARLRKAKAEAV
Sbjct:    1 MGKRTKKVGICGKYGTRYGASLRKIIKKIEISQHSKYTCVFCGKDNVKREVVGIWKCGSCKKSMAGGAYTLSTAAAVQVRSTLARLRKAKAEAV 94          
BLAST of EWM30340.1 vs. NCBI_GenBank
Match: gi|301106014|ref|XP_002902090.1| (60S ribosomal protein L37a, putative [Phytophthora infestans T30-4] >gi|675178309|ref|XP_008898039.1| ribosomal protein L37a [Phytophthora parasitica INRA-310] >gi|66270175|gb|AAY43417.1| ribosomal protein L37 [Phytophthora infestans] >gi|262098710|gb|EEY56762.1| 60S ribosomal protein L37a, putative [Phytophthora infestans T30-4] >gi|566009531|gb|ETI32442.1| ribosomal protein L37a [Phytophthora parasitica P1569] >gi|567947016|gb|ETK72815.1| ribosomal protein L37a [Phytophthora parasitica] >gi|567975727|gb|ETL26267.1| ribosomal protein L37a [Phytophthora parasitica] >gi|568005176|gb|ETL79481.1| ribosomal protein L37a [Phytophthora parasitica] >gi|568035077|gb|ETM32734.1| ribosomal protein L37a [Phytophthora parasitica] >gi|568102278|gb|ETN16960.1| ribosomal protein L37a [Phytophthora parasitica INRA-310] >gi|570313231|gb|ETO61179.1| ribosomal protein L37a [Phytophthora parasitica P1976] >gi|570937020|gb|ETP02277.1| ribosomal protein L37a [Phytophthora parasitica CJ01A1] >gi|570967349|gb|ETP30468.1| ribosomal protein L37a [Phytophthora parasitica P10297] >gi|970650941|gb|KUF89858.1| 60S ribosomal protein L37a [Phytophthora nicotianae] >gi|970664160|gb|KUG01157.1| 60S ribosomal protein L37a [Phytophthora nicotianae])

HSP 1 Score: 149.828 bits (377), Expect = 3.183e-45
Identity = 70/93 (75.27%), Postives = 83/93 (89.25%), Query Frame = 0
Query:    1 MGKRTKKVGICGKYGTRYGASLRKIIKKIEISQHSKYTCVFCGKDNVKREVVGIWKCGSCKKSMAGGAYTLSTAAAVQVRSTLARLRKAKAEA 93
            MGKRTKKVGICGKYGTRYG+SLRK++KKIEISQH+KY CVFCGKD++KR V GIW+C SC K++AGGAY L+TA+A  VRSTLARLRK + +A
Sbjct:    1 MGKRTKKVGICGKYGTRYGSSLRKVVKKIEISQHAKYNCVFCGKDSIKRNVTGIWECRSCHKTIAGGAYLLNTASAATVRSTLARLRKIRDDA 93          
BLAST of EWM30340.1 vs. NCBI_GenBank
Match: gi|695399760|ref|XP_009522350.1| (putative ribosomal protein, partial [Phytophthora sojae] >gi|348679817|gb|EGZ19633.1| putative ribosomal protein, partial [Phytophthora sojae])

HSP 1 Score: 148.673 bits (374), Expect = 8.451e-45
Identity = 70/93 (75.27%), Postives = 82/93 (88.17%), Query Frame = 0
Query:    1 MGKRTKKVGICGKYGTRYGASLRKIIKKIEISQHSKYTCVFCGKDNVKREVVGIWKCGSCKKSMAGGAYTLSTAAAVQVRSTLARLRKAKAEA 93
             GKRTKKVGICGKYGTRYG+SLRK++KKIEISQHSKY CVFCGKD++KR V GIW+C SC K++AGGAY L+TA+A  VRSTLARLRK + +A
Sbjct:    1 QGKRTKKVGICGKYGTRYGSSLRKVVKKIEISQHSKYNCVFCGKDSIKRNVTGIWECRSCHKTIAGGAYLLNTASAATVRSTLARLRKIRDDA 93          
BLAST of EWM30340.1 vs. NCBI_GenBank
Match: gi|1214706280|gb|OWZ17845.1| (60S ribosomal protein L37a [Phytophthora megakarya])

HSP 1 Score: 148.673 bits (374), Expect = 8.544e-45
Identity = 70/93 (75.27%), Postives = 82/93 (88.17%), Query Frame = 0
Query:    1 MGKRTKKVGICGKYGTRYGASLRKIIKKIEISQHSKYTCVFCGKDNVKREVVGIWKCGSCKKSMAGGAYTLSTAAAVQVRSTLARLRKAKAEA 93
            MGKRTKKVGICGKYGTRYG+SLRK++KKIEISQH+KY CVFCGKD +KR V GIW+C SC K++AGGAY L+TA+A  VRSTLARLRK + +A
Sbjct:    1 MGKRTKKVGICGKYGTRYGSSLRKVVKKIEISQHAKYNCVFCGKDAIKRNVTGIWECRSCHKTIAGGAYLLNTASAATVRSTLARLRKIRDDA 93          
BLAST of EWM30340.1 vs. NCBI_GenBank
Match: gi|1173946698|gb|OQR95203.1| (60S ribosomal protein L37a [Achlya hypogyna] >gi|1173958888|gb|OQS05184.1| 60S ribosomal protein L37a [Thraustotheca clavata])

HSP 1 Score: 147.902 bits (372), Expect = 1.562e-44
Identity = 70/94 (74.47%), Postives = 80/94 (85.11%), Query Frame = 0
Query:    1 MGKRTKKVGICGKYGTRYGASLRKIIKKIEISQHSKYTCVFCGKDNVKREVVGIWKCGSCKKSMAGGAYTLSTAAAVQVRSTLARLRKAKAEAV 94
            MGKRTKKVGICGKYG RYG+SLRK++KKIE+SQH+KY CVFCGKDNVKRE  GIWKC SC K +AGGAY L+T +A  VRSTLARLRKA+   +
Sbjct:    1 MGKRTKKVGICGKYGVRYGSSLRKVVKKIEVSQHAKYNCVFCGKDNVKRECTGIWKCKSCHKVVAGGAYLLNTPSAATVRSTLARLRKAREANI 94          
BLAST of EWM30340.1 vs. NCBI_GenBank
Match: gi|953500868|emb|CEG37901.1| (ribosomal protein l37a [Plasmopara halstedii])

HSP 1 Score: 147.902 bits (372), Expect = 1.706e-44
Identity = 70/93 (75.27%), Postives = 81/93 (87.10%), Query Frame = 0
Query:    1 MGKRTKKVGICGKYGTRYGASLRKIIKKIEISQHSKYTCVFCGKDNVKREVVGIWKCGSCKKSMAGGAYTLSTAAAVQVRSTLARLRKAKAEA 93
            MGKRTKKVGICGKYGTRYG+SLRK++KKIEISQH+KY CVFCGKD VKR V GIW C SC K++AGGAY L+TA+A  VRSTLARLRK + ++
Sbjct:    1 MGKRTKKVGICGKYGTRYGSSLRKVVKKIEISQHAKYNCVFCGKDTVKRTVTGIWHCRSCHKTIAGGAYLLNTASAATVRSTLARLRKIRDDS 93          
BLAST of EWM30340.1 vs. NCBI_GenBank
Match: gi|325184780|emb|CCA19271.1| (60S ribosomal protein L37a putative [Albugo laibachii Nc14])

HSP 1 Score: 147.132 bits (370), Expect = 2.795e-44
Identity = 68/94 (72.34%), Postives = 78/94 (82.98%), Query Frame = 0
Query:    1 MGKRTKKVGICGKYGTRYGASLRKIIKKIEISQHSKYTCVFCGKDNVKREVVGIWKCGSCKKSMAGGAYTLSTAAAVQVRSTLARLRKAKAEAV 94
            MG+RTKKVGICGKYGTRYG+SLRK++KKIEISQHSKY C FCGKD+VKR V GIW C SC K+MAGGAY L+T +A  VRSTLAR+R+   E  
Sbjct:    1 MGRRTKKVGICGKYGTRYGSSLRKVVKKIEISQHSKYNCPFCGKDSVKRTVTGIWNCKSCHKTMAGGAYLLNTPSAATVRSTLARIRRTHDEPT 94          
BLAST of EWM30340.1 vs. NCBI_GenBank
Match: gi|669141412|ref|XP_008606268.1| (60S ribosomal protein L43 [Saprolegnia diclina VS20] >gi|530742327|gb|EQC40569.1| 60S ribosomal protein L43 [Saprolegnia diclina VS20])

HSP 1 Score: 145.591 bits (366), Expect = 1.514e-43
Identity = 69/94 (73.40%), Postives = 79/94 (84.04%), Query Frame = 0
Query:    1 MGKRTKKVGICGKYGTRYGASLRKIIKKIEISQHSKYTCVFCGKDNVKREVVGIWKCGSCKKSMAGGAYTLSTAAAVQVRSTLARLRKAKAEAV 94
            MGKRTKKVGICGKYG RYG+SLRK++KKIE+SQH+KY CVFCGKDNVKR   GIWKC SC K +AGGAY L+T +A  VRSTLARLRKA+   +
Sbjct:    1 MGKRTKKVGICGKYGVRYGSSLRKVVKKIEVSQHAKYNCVFCGKDNVKRACTGIWKCKSCHKVVAGGAYLLNTPSAATVRSTLARLRKAREANI 94          
BLAST of EWM30340.1 vs. NCBI_GenBank
Match: gi|698781679|ref|XP_009823883.1| (ribosomal protein L37a [Aphanomyces astaci] >gi|574121607|gb|ETV87084.1| ribosomal protein L37a [Aphanomyces astaci])

HSP 1 Score: 145.206 bits (365), Expect = 1.617e-43
Identity = 69/94 (73.40%), Postives = 79/94 (84.04%), Query Frame = 0
Query:    1 MGKRTKKVGICGKYGTRYGASLRKIIKKIEISQHSKYTCVFCGKDNVKREVVGIWKCGSCKKSMAGGAYTLSTAAAVQVRSTLARLRKAKAEAV 94
            MGKRTKKVGICGKYG RYG+SLRK++KKIE+SQH+KY CVFCGKD+VKRE  GIWKC SC K  AGGAY L+T +A  VRSTLARLRKA+   +
Sbjct:    1 MGKRTKKVGICGKYGVRYGSSLRKVVKKIEVSQHAKYNCVFCGKDSVKRESTGIWKCKSCHKVTAGGAYLLNTPSAATVRSTLARLRKAREANI 94          
BLAST of EWM30340.1 vs. NCBI_GenBank
Match: gi|813141688|ref|XP_012199042.1| (60S ribosomal protein L43 [Saprolegnia parasitica CBS 223.65] >gi|641536345|gb|KDO30234.1| 60S ribosomal protein L43 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 145.206 bits (365), Expect = 2.814e-43
Identity = 69/90 (76.67%), Postives = 78/90 (86.67%), Query Frame = 0
Query:    1 MGKRTKKVGICGKYGTRYGASLRKIIKKIEISQHSKYTCVFCGKDNVKREVVGIWKCGSCKKSMAGGAYTLSTAAAVQVRSTLARLRKAK 90
            MGKRTKKVGICGKYG RYG+SLRK++KKIE+SQH+KY CVFCGKDNVKR   GIWKC SC K +AGGAY L+T +A  VRSTLARLRKA+
Sbjct:    1 MGKRTKKVGICGKYGVRYGSSLRKVVKKIEVSQHAKYNCVFCGKDNVKRACTGIWKCKSCHKVVAGGAYLLNTPSAATVRSTLARLRKAR 90          
The following BLAST results are available for this feature:
BLAST of EWM30340.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112999|gb|EWM30340.1|1.250e-59100.0060s ribosomal protein l37a [Nannochloropsis gadita... [more]
gi|301106014|ref|XP_002902090.1|3.183e-4575.2760S ribosomal protein L37a, putative [Phytophthora... [more]
gi|695399760|ref|XP_009522350.1|8.451e-4575.27putative ribosomal protein, partial [Phytophthora ... [more]
gi|1214706280|gb|OWZ17845.1|8.544e-4575.2760S ribosomal protein L37a [Phytophthora megakarya... [more]
gi|1173946698|gb|OQR95203.1|1.562e-4474.4760S ribosomal protein L37a [Achlya hypogyna] >gi|1... [more]
gi|953500868|emb|CEG37901.1|1.706e-4475.27ribosomal protein l37a [Plasmopara halstedii][more]
gi|325184780|emb|CCA19271.1|2.795e-4472.3460S ribosomal protein L37a putative [Albugo laibac... [more]
gi|669141412|ref|XP_008606268.1|1.514e-4373.4060S ribosomal protein L43 [Saprolegnia diclina VS2... [more]
gi|698781679|ref|XP_009823883.1|1.617e-4373.40ribosomal protein L37a [Aphanomyces astaci] >gi|57... [more]
gi|813141688|ref|XP_012199042.1|2.814e-4376.6760S ribosomal protein L43 [Saprolegnia parasitica ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna439rna439Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications