EWM30340.1, cds439 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30340.1 vs. NCBI_GenBank
Match: gi|585112999|gb|EWM30340.1| (60s ribosomal protein l37a [Nannochloropsis gaditana]) HSP 1 Score: 186.037 bits (471), Expect = 1.250e-59 Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0
Query: 1 MGKRTKKVGICGKYGTRYGASLRKIIKKIEISQHSKYTCVFCGKDNVKREVVGIWKCGSCKKSMAGGAYTLSTAAAVQVRSTLARLRKAKAEAV 94
MGKRTKKVGICGKYGTRYGASLRKIIKKIEISQHSKYTCVFCGKDNVKREVVGIWKCGSCKKSMAGGAYTLSTAAAVQVRSTLARLRKAKAEAV
Sbjct: 1 MGKRTKKVGICGKYGTRYGASLRKIIKKIEISQHSKYTCVFCGKDNVKREVVGIWKCGSCKKSMAGGAYTLSTAAAVQVRSTLARLRKAKAEAV 94
BLAST of EWM30340.1 vs. NCBI_GenBank
Match: gi|301106014|ref|XP_002902090.1| (60S ribosomal protein L37a, putative [Phytophthora infestans T30-4] >gi|675178309|ref|XP_008898039.1| ribosomal protein L37a [Phytophthora parasitica INRA-310] >gi|66270175|gb|AAY43417.1| ribosomal protein L37 [Phytophthora infestans] >gi|262098710|gb|EEY56762.1| 60S ribosomal protein L37a, putative [Phytophthora infestans T30-4] >gi|566009531|gb|ETI32442.1| ribosomal protein L37a [Phytophthora parasitica P1569] >gi|567947016|gb|ETK72815.1| ribosomal protein L37a [Phytophthora parasitica] >gi|567975727|gb|ETL26267.1| ribosomal protein L37a [Phytophthora parasitica] >gi|568005176|gb|ETL79481.1| ribosomal protein L37a [Phytophthora parasitica] >gi|568035077|gb|ETM32734.1| ribosomal protein L37a [Phytophthora parasitica] >gi|568102278|gb|ETN16960.1| ribosomal protein L37a [Phytophthora parasitica INRA-310] >gi|570313231|gb|ETO61179.1| ribosomal protein L37a [Phytophthora parasitica P1976] >gi|570937020|gb|ETP02277.1| ribosomal protein L37a [Phytophthora parasitica CJ01A1] >gi|570967349|gb|ETP30468.1| ribosomal protein L37a [Phytophthora parasitica P10297] >gi|970650941|gb|KUF89858.1| 60S ribosomal protein L37a [Phytophthora nicotianae] >gi|970664160|gb|KUG01157.1| 60S ribosomal protein L37a [Phytophthora nicotianae]) HSP 1 Score: 149.828 bits (377), Expect = 3.183e-45 Identity = 70/93 (75.27%), Postives = 83/93 (89.25%), Query Frame = 0
Query: 1 MGKRTKKVGICGKYGTRYGASLRKIIKKIEISQHSKYTCVFCGKDNVKREVVGIWKCGSCKKSMAGGAYTLSTAAAVQVRSTLARLRKAKAEA 93
MGKRTKKVGICGKYGTRYG+SLRK++KKIEISQH+KY CVFCGKD++KR V GIW+C SC K++AGGAY L+TA+A VRSTLARLRK + +A
Sbjct: 1 MGKRTKKVGICGKYGTRYGSSLRKVVKKIEISQHAKYNCVFCGKDSIKRNVTGIWECRSCHKTIAGGAYLLNTASAATVRSTLARLRKIRDDA 93
BLAST of EWM30340.1 vs. NCBI_GenBank
Match: gi|695399760|ref|XP_009522350.1| (putative ribosomal protein, partial [Phytophthora sojae] >gi|348679817|gb|EGZ19633.1| putative ribosomal protein, partial [Phytophthora sojae]) HSP 1 Score: 148.673 bits (374), Expect = 8.451e-45 Identity = 70/93 (75.27%), Postives = 82/93 (88.17%), Query Frame = 0
Query: 1 MGKRTKKVGICGKYGTRYGASLRKIIKKIEISQHSKYTCVFCGKDNVKREVVGIWKCGSCKKSMAGGAYTLSTAAAVQVRSTLARLRKAKAEA 93
GKRTKKVGICGKYGTRYG+SLRK++KKIEISQHSKY CVFCGKD++KR V GIW+C SC K++AGGAY L+TA+A VRSTLARLRK + +A
Sbjct: 1 QGKRTKKVGICGKYGTRYGSSLRKVVKKIEISQHSKYNCVFCGKDSIKRNVTGIWECRSCHKTIAGGAYLLNTASAATVRSTLARLRKIRDDA 93
BLAST of EWM30340.1 vs. NCBI_GenBank
Match: gi|1214706280|gb|OWZ17845.1| (60S ribosomal protein L37a [Phytophthora megakarya]) HSP 1 Score: 148.673 bits (374), Expect = 8.544e-45 Identity = 70/93 (75.27%), Postives = 82/93 (88.17%), Query Frame = 0
Query: 1 MGKRTKKVGICGKYGTRYGASLRKIIKKIEISQHSKYTCVFCGKDNVKREVVGIWKCGSCKKSMAGGAYTLSTAAAVQVRSTLARLRKAKAEA 93
MGKRTKKVGICGKYGTRYG+SLRK++KKIEISQH+KY CVFCGKD +KR V GIW+C SC K++AGGAY L+TA+A VRSTLARLRK + +A
Sbjct: 1 MGKRTKKVGICGKYGTRYGSSLRKVVKKIEISQHAKYNCVFCGKDAIKRNVTGIWECRSCHKTIAGGAYLLNTASAATVRSTLARLRKIRDDA 93
BLAST of EWM30340.1 vs. NCBI_GenBank
Match: gi|1173946698|gb|OQR95203.1| (60S ribosomal protein L37a [Achlya hypogyna] >gi|1173958888|gb|OQS05184.1| 60S ribosomal protein L37a [Thraustotheca clavata]) HSP 1 Score: 147.902 bits (372), Expect = 1.562e-44 Identity = 70/94 (74.47%), Postives = 80/94 (85.11%), Query Frame = 0
Query: 1 MGKRTKKVGICGKYGTRYGASLRKIIKKIEISQHSKYTCVFCGKDNVKREVVGIWKCGSCKKSMAGGAYTLSTAAAVQVRSTLARLRKAKAEAV 94
MGKRTKKVGICGKYG RYG+SLRK++KKIE+SQH+KY CVFCGKDNVKRE GIWKC SC K +AGGAY L+T +A VRSTLARLRKA+ +
Sbjct: 1 MGKRTKKVGICGKYGVRYGSSLRKVVKKIEVSQHAKYNCVFCGKDNVKRECTGIWKCKSCHKVVAGGAYLLNTPSAATVRSTLARLRKAREANI 94
BLAST of EWM30340.1 vs. NCBI_GenBank
Match: gi|953500868|emb|CEG37901.1| (ribosomal protein l37a [Plasmopara halstedii]) HSP 1 Score: 147.902 bits (372), Expect = 1.706e-44 Identity = 70/93 (75.27%), Postives = 81/93 (87.10%), Query Frame = 0
Query: 1 MGKRTKKVGICGKYGTRYGASLRKIIKKIEISQHSKYTCVFCGKDNVKREVVGIWKCGSCKKSMAGGAYTLSTAAAVQVRSTLARLRKAKAEA 93
MGKRTKKVGICGKYGTRYG+SLRK++KKIEISQH+KY CVFCGKD VKR V GIW C SC K++AGGAY L+TA+A VRSTLARLRK + ++
Sbjct: 1 MGKRTKKVGICGKYGTRYGSSLRKVVKKIEISQHAKYNCVFCGKDTVKRTVTGIWHCRSCHKTIAGGAYLLNTASAATVRSTLARLRKIRDDS 93
BLAST of EWM30340.1 vs. NCBI_GenBank
Match: gi|325184780|emb|CCA19271.1| (60S ribosomal protein L37a putative [Albugo laibachii Nc14]) HSP 1 Score: 147.132 bits (370), Expect = 2.795e-44 Identity = 68/94 (72.34%), Postives = 78/94 (82.98%), Query Frame = 0
Query: 1 MGKRTKKVGICGKYGTRYGASLRKIIKKIEISQHSKYTCVFCGKDNVKREVVGIWKCGSCKKSMAGGAYTLSTAAAVQVRSTLARLRKAKAEAV 94
MG+RTKKVGICGKYGTRYG+SLRK++KKIEISQHSKY C FCGKD+VKR V GIW C SC K+MAGGAY L+T +A VRSTLAR+R+ E
Sbjct: 1 MGRRTKKVGICGKYGTRYGSSLRKVVKKIEISQHSKYNCPFCGKDSVKRTVTGIWNCKSCHKTMAGGAYLLNTPSAATVRSTLARIRRTHDEPT 94
BLAST of EWM30340.1 vs. NCBI_GenBank
Match: gi|669141412|ref|XP_008606268.1| (60S ribosomal protein L43 [Saprolegnia diclina VS20] >gi|530742327|gb|EQC40569.1| 60S ribosomal protein L43 [Saprolegnia diclina VS20]) HSP 1 Score: 145.591 bits (366), Expect = 1.514e-43 Identity = 69/94 (73.40%), Postives = 79/94 (84.04%), Query Frame = 0
Query: 1 MGKRTKKVGICGKYGTRYGASLRKIIKKIEISQHSKYTCVFCGKDNVKREVVGIWKCGSCKKSMAGGAYTLSTAAAVQVRSTLARLRKAKAEAV 94
MGKRTKKVGICGKYG RYG+SLRK++KKIE+SQH+KY CVFCGKDNVKR GIWKC SC K +AGGAY L+T +A VRSTLARLRKA+ +
Sbjct: 1 MGKRTKKVGICGKYGVRYGSSLRKVVKKIEVSQHAKYNCVFCGKDNVKRACTGIWKCKSCHKVVAGGAYLLNTPSAATVRSTLARLRKAREANI 94
BLAST of EWM30340.1 vs. NCBI_GenBank
Match: gi|698781679|ref|XP_009823883.1| (ribosomal protein L37a [Aphanomyces astaci] >gi|574121607|gb|ETV87084.1| ribosomal protein L37a [Aphanomyces astaci]) HSP 1 Score: 145.206 bits (365), Expect = 1.617e-43 Identity = 69/94 (73.40%), Postives = 79/94 (84.04%), Query Frame = 0
Query: 1 MGKRTKKVGICGKYGTRYGASLRKIIKKIEISQHSKYTCVFCGKDNVKREVVGIWKCGSCKKSMAGGAYTLSTAAAVQVRSTLARLRKAKAEAV 94
MGKRTKKVGICGKYG RYG+SLRK++KKIE+SQH+KY CVFCGKD+VKRE GIWKC SC K AGGAY L+T +A VRSTLARLRKA+ +
Sbjct: 1 MGKRTKKVGICGKYGVRYGSSLRKVVKKIEVSQHAKYNCVFCGKDSVKRESTGIWKCKSCHKVTAGGAYLLNTPSAATVRSTLARLRKAREANI 94
BLAST of EWM30340.1 vs. NCBI_GenBank
Match: gi|813141688|ref|XP_012199042.1| (60S ribosomal protein L43 [Saprolegnia parasitica CBS 223.65] >gi|641536345|gb|KDO30234.1| 60S ribosomal protein L43 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 145.206 bits (365), Expect = 2.814e-43 Identity = 69/90 (76.67%), Postives = 78/90 (86.67%), Query Frame = 0
Query: 1 MGKRTKKVGICGKYGTRYGASLRKIIKKIEISQHSKYTCVFCGKDNVKREVVGIWKCGSCKKSMAGGAYTLSTAAAVQVRSTLARLRKAK 90
MGKRTKKVGICGKYG RYG+SLRK++KKIE+SQH+KY CVFCGKDNVKR GIWKC SC K +AGGAY L+T +A VRSTLARLRKA+
Sbjct: 1 MGKRTKKVGICGKYGVRYGSSLRKVVKKIEVSQHAKYNCVFCGKDNVKRACTGIWKCKSCHKVVAGGAYLLNTPSAATVRSTLARLRKAR 90 The following BLAST results are available for this feature:
BLAST of EWM30340.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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