rna4389, rna4389 (mRNA) Nannochloropsis gaditana

Overview
Namerna4389
Unique Namerna4389
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2580
Alignment locationCM002463.1:463015..463756 +

Link to JBrowse

Properties
Property NameValue
Productatp-binding cassette superfamily
Orig transcript idgnl|cribi|Naga_102428g1.5250.mrna
Orig protein idgnl|cribi|Naga_102428g1.5250
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:463015..463756 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102428g1gene4233Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4389rna4389-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26294.1cds4379Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4389 ID=rna4389|Name=rna4389|organism=Nannochloropsis gaditana|type=mRNA|length=2580bp
ATGCTGGCGATCTATAACACCATCAAGCCTCAAGTGCTGTTGGAGATGCT
ACCCAACGCTACTCGTACAATACGTTTTGATCATTTCCACGCAATTAACG
GTAACCCACAATGTACTGGCTATGATTCCAACATCTTCTGGCGGTGCCCT
ACCCGAGATTGCAGTCCTGATGCCTGCAACAAGTTGGTGTTTGCGGTAGC
TCCGTCCTCCAACACTGATGCAGCAGCAGCCGAAGCTGCCAATGCCCTGC
AGCTCCGTGTGCAAGACTTGACAAACTCCAGCGTGTCGACACTACTTTTC
CCTTCGGAGGCAGACTTGGATGCATACATTGCTCAACCGGACTACGCTGT
CAACACGACCCTAAAAAATATCGGCGTGGCAGTTGTCTTCGATTCAGGTG
CCCCCAACTGGCACTACCATTTGCGCGTGAACCGGACCGTGAATGAAGGG
TACACCTACAATCTTCCGCCGACCACGCTGAGCACAGATAGCCTCTTAAA
GAACCCGAATGACTGGCCTAAGGTATGCTCGCGATGCTCGTGCCAATATT
TACAATCTTGGTACCAATCAGGGGCGCTAGCAGTGCAAAATCTGGTAGAT
TCATTCATCATCTCGCAAGCCGCCGGCACACCACGGAAGCTAACAGCCTC
CGTGGTCAACTTTCCATCCCCTGGCTACACCGAAGCAGGATTTTGGGGGC
AGGCGCAGTCCTTCTTCCCAATTTTTATGCTCGTTACAATTCTTTATTCA
GTCTCCAATGTGGTGCGGAGTTTGGTAACTGAGAAAGAGGCTCGCATTCG
GGAGGGTATGCGAATGATGGCCTTGACGGACTCGGCACTGTATGCGAGCT
GGGTGTTCCATTTTGCTACGACCTTTACCATCATCGCGGCCCTGATCGTG
CTGGTGGGGGGCAAACTTTTTCAGCATTCGGACAAGGGATTGGTGTTTGC
GTTCTTTCTGCTCTTCTTCTTTGCAACGATGGCGTTCGCGTTTTGGATGT
CGACATTTTTCAGCAAGAGCAAGACGGCGGCGAGCTTGGGCATCATGCCT
TACTTCGCTGGTTATTTTCTGACGATGGCCTTGAAGCCTGCCTCGGGCCG
TAGCGTGAAGCTACTGGCGTCCTTGCACCCTGCAGCGGCGTTTGCACTGG
GTATTAGTGCTTTCACTGAGTACGAGGACGCACAGCAAGGCGTGACGCTG
TTCACATTTGCAACCTCCGCGAACGGGAACTTTGCTTTCTCGGATGCGTT
AGGCATGCTACTGGTGGACGTCTTTGTGTACGCTTTTCTGTTTTGGTATT
TTGAGAAGGTTTGGCCGAACGAGTTTGGAACGCGTTTGCCACCGTATTTT
TTGTGTATGCCATCATACTGGAACTCTTGCCTTGGTATTGGTAGAGGCGA
GGTAAGGCCCTTACACGAGGGAATAAGCAACTCTTCCGGAGAGCTAAAGC
AAGAATCGGGGCCCGACGTGGAGCGTGTGCCCGACACCTTGGCGCAGCAA
ATCAAAGAAGGGAAGTGCATCTGTATACGGGACATGTGCAAGACGTTCTC
GACCAACACGGGGCCCAAGCATGCGGTGGACCACCTGAACCTGACCATGT
ACTCCGGGCAGATCACGGCTTTGTTGGGTCACAATGGCGCAGGCAAGTCA
ACAACGATCGGTATTTTGACGGGGCTGACGGCTCCGACATCAGGCGTGGC
GATCATCAACGGCATGGACGTGTCGCAAGACATGCAAAGCATCCGGCACA
GCTTAGGAGTGTGTCCGCAGCACGACGTGTTGTTTGCGGACCTGACGGTG
GAGGAGCATCTGACGCTTTTTGCGAATTTCAAGGGCATGCCACGATCGGA
TGTTCAAGCTGCAGTGACTAGCATGATTGCGGAGGTCGGCTTGACAGAGA
AGCGCAAGGTAGCGAGCAAGAACTTATCGGGAGGCATGAAGCGAAAGTTG
AGTCTCGGCATAGCTTTTATAGGAGGCAGCAAAGTGGTGATCTTGGACGA
GCCCACGTCAGGCATCGATGCGTATTCTCGGCGCTTTGTCTGGAATGTAA
TTCGCAAGTATAAGGAAGGCCGCACAATCATTTTGACGACGCATTTCTTG
GAAGAGGCTGACCTGCTTGGCGATCGTATCGCGATCATGGCGAAAGGCAA
GTTGCGTGCATGTGGTTCTTCTCTCTTTCTGAAGAACAACTTCGGAGTGG
GCTACAATCTGACTATCGAGAAGAAAGCTGCGGCAGATGCGACGCGCATT
CAACGGTACGTGCAAAACAAGGTGCAAGACGCGAAGGTGTTGAGCTGTGT
AGGTGCAGAGATCTCTTTTCAGTTGCCTCGAAACAGTGCGGAAGACTTCA
AGGCGCTGTTTGAAGGCTTGGACAATCATCAGGAGGCTTTAGGTTTGGAG
CACTATGGTGTCTCAGTAACGACGCTGGAGGAGGTGTTCATCCGTGTGAC
GCGAGGGGATGAGATCGACGTGGAAGCCAAGGCTGCAATCTCCGTGCGCC
GCAACAGTTTGGAAGAACGTCGGAGAAGCTTGGAAGAAACGCGATACACA
AGCTTGTGCCGTACCCTTGACGCGCGATAA
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protein sequence of rna4389

>rna4389-protein ID=rna4389-protein|Name=rna4389|organism=Nannochloropsis gaditana|type=polypeptide|length=231bp
MLNFMCGVVLVTLTVMMTFIPITRDVALKLVYLFRLAPPFAAGNGLLNVV
FTDFFSSLDQKQYTPYSLNIAGYSMIYMSVETVVYFVLVLWVEYLIRRPT
VSKLLEGGSSSMAAKDCSGKDEAVLEEEDRVRREATIDTMKAGGDVVVIK
DMTKTYRGGKLAVRGMSLGIPNGECFGLLGVNGAGKTTTLSILTAEFPPS
SGQVWLGGYDIADNPEVVRRLVGSIWSCTPV
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mRNA from alignment at CM002463.1:463015..463756+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4389 ID=rna4389|Name=rna4389|organism=Nannochloropsis gaditana|type=mRNA|length=742bp|location=Sequence derived from alignment at CM002463.1:463015..463756+ (Nannochloropsis gaditana)
ATGTTGAACTTCATGTGCGGCGTTGTTCTTGTGACCTTGACGGTGATGAT
GACCTTCATTCCAATCACCCGCGATGTGGCTTTGAAATTGGTGTATCTTT
TCAGGCTCGCTCCGCCATTCGCTGCAGGAAATGGGCTCTTGAATGTCGTC
TTCACAGACTTCTTTTCGTCGCTGGATCAGAAACAATACACACCATACTC
GTTGAACATCGCCGGGTACTCTATGATCTACATGAGTGTGGAGACTGTAG
TATATTTCGTCCTGGTCTTGTGGGTCGAGTACTTGATCCGTCGTCCTACC
GTATCGAAGCTTTTAGAGGGCGGCTCTTCGTCGATGGCTGCAAAGGACTG
CTCTGGAAAAGACGAAgccgtgctggaggaggaggatcgcgTGCGTCGCG
AGGCAACGATAGACACAatgaaagcgggaggggatgTCGTGGTGATCAAG
GACATGACCAAGACGTATCGTGGCGGGAAACTAGCTGTGAGGGGCATGTC
TCTTGGCATCCCTAATGGGGAGTGCTTCGGTCTGCTTGGTGTGAACGGTG
CAGGCAAAACGACCACGCTGAGCATTCTGACGGCTGAGTTCCCGCCGTCG
TCAGGGCAGGTGTGGCTTGGCGGGTACGACATCGCTGACAACCCGGAAGT
GGTTCGCCGCCTGGTAGGGTACTGTCCTCAGTTCGACGCTCTTTTCGATC
TGCTGACTGGTCAGGAGCATTTGGAGCTGTACGCCCGTGTGA
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Coding sequence (CDS) from alignment at CM002463.1:463015..463756+

>rna4389 ID=rna4389|Name=rna4389|organism=Nannochloropsis gaditana|type=CDS|length=1392bp|location=Sequence derived from alignment at CM002463.1:463015..463756+ (Nannochloropsis gaditana)
ATGTTGAACTTCATGTGCGGCGTTGTTCTTGTGACCTTGACGGTGATGAT
GACCTTCATTCCAATCACCCGCGATGTGGCTTTGAAATTGGTGTATCTTT
TCAGGCTCGCTCCGCCATTCGCTGCAGGAAATGGGCTCTTGAATGTCGTC
TTCACAGACTTCTTTTCGTCGCTGGATCAGAAACAATACACACCATACTC
GTTGAACATCGCCGGGTACTCTATGATCTACATGAGTGTGGAGACTGTAG
TATATTTCGTCCTGGTCTTGTGGGTCGAGTACTTGATCCGTCGTCCTACC
GTATCGAAGCTTTTAGAGGGCGGCTCTTCGTCGATGGCTGCAAAGGACTG
CTCTGGAAAAGACGAAgccgtgctggaggaggaggatcgcgTGCGTCGCG
AGGCAACGATAGACACAatgaaagcgggaggggatgTCGTGGTGATCAAG
GACATGACCAAGACGTATCGTGGCGGGAAACTAGCTGTGAGGGGCATGTC
TCTTGGCATCCCTAATGGGGAGTGCTTCGGTCTGCTTGGTGTGAACGGTG
CAGGCAAAACGACCACGCTGAGCATTCTGACGGCTGAGTTCCCGCCGTCG
TCAGGGCAGGTGTGGCTTGGCGGGTACGACATCGCTGACAACCCGGAAGT
GGTTCGCCGCCTGGTAGGGAGCATTTGGAGCTGTACGCCCGTGTGAATGT
TGAACTTCATGTGCGGCGTTGTTCTTGTGACCTTGACGGTGATGATGACC
TTCATTCCAATCACCCGCGATGTGGCTTTGAAATTGGTGTATCTTTTCAG
GCTCGCTCCGCCATTCGCTGCAGGAAATGGGCTCTTGAATGTCGTCTTCA
CAGACTTCTTTTCGTCGCTGGATCAGAAACAATACACACCATACTCGTTG
AACATCGCCGGGTACTCTATGATCTACATGAGTGTGGAGACTGTAGTATA
TTTCGTCCTGGTCTTGTGGGTCGAGTACTTGATCCGTCGTCCTACCGTAT
CGAAGCTTTTAGAGGGCGGCTCTTCGTCGATGGCTGCAAAGGACTGCTCT
GGAAAAGACGAAgccgtgctggaggaggaggatcgcgTGCGTCGCGAGGC
AACGATAGACACAatgaaagcgggaggggatgTCGTGGTGATCAAGGACA
TGACCAAGACGTATCGTGGCGGGAAACTAGCTGTGAGGGGCATGTCTCTT
GGCATCCCTAATGGGGAGTGCTTCGGTCTGCTTGGTGTGAACGGTGCAGG
CAAAACGACCACGCTGAGCATTCTGACGGCTGAGTTCCCGCCGTCGTCAG
GGCAGGTGTGGCTTGGCGGGTACGACATCGCTGACAACCCGGAAGTGGTT
CGCCGCCTGGTAGGGAGCATTTGGAGCTGTACGCCCGTGTGA
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Synonyms
Publications