EWM26294.1, cds4379 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26294.1 vs. NCBI_GenBank
Match: gi|585108297|gb|EWM26294.1| (atp-binding cassette superfamily [Nannochloropsis gaditana]) HSP 1 Score: 469.544 bits (1207), Expect = 2.118e-167 Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 0
Query: 1 MLNFMCGVVLVTLTVMMTFIPITRDVALKLVYLFRLAPPFAAGNGLLNVVFTDFFSSLDQKQYTPYSLNIAGYSMIYMSVETVVYFVLVLWVEYLIRRPTVSKLLEGGSSSMAAKDCSGKDEAVLEEEDRVRREATIDTMKAGGDVVVIKDMTKTYRGGKLAVRGMSLGIPNGECFGLLGVNGAGKTTTLSILTAEFPPSSGQVWLGGYDIADNPEVVRRLVGSIWSCTPV 231
MLNFMCGVVLVTLTVMMTFIPITRDVALKLVYLFRLAPPFAAGNGLLNVVFTDFFSSLDQKQYTPYSLNIAGYSMIYMSVETVVYFVLVLWVEYLIRRPTVSKLLEGGSSSMAAKDCSGKDEAVLEEEDRVRREATIDTMKAGGDVVVIKDMTKTYRGGKLAVRGMSLGIPNGECFGLLGVNGAGKTTTLSILTAEFPPSSGQVWLGGYDIADNPEVVRRLVGSIWSCTPV
Sbjct: 1 MLNFMCGVVLVTLTVMMTFIPITRDVALKLVYLFRLAPPFAAGNGLLNVVFTDFFSSLDQKQYTPYSLNIAGYSMIYMSVETVVYFVLVLWVEYLIRRPTVSKLLEGGSSSMAAKDCSGKDEAVLEEEDRVRREATIDTMKAGGDVVVIKDMTKTYRGGKLAVRGMSLGIPNGECFGLLGVNGAGKTTTLSILTAEFPPSSGQVWLGGYDIADNPEVVRRLVGSIWSCTPV 231
BLAST of EWM26294.1 vs. NCBI_GenBank
Match: gi|553178451|ref|XP_005852555.1| (antibiotic transport system ATP-binding protein, partial [Nannochloropsis gaditana CCMP526] >gi|422295978|gb|EKU23277.1| antibiotic transport system ATP-binding protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 453.366 bits (1165), Expect = 3.006e-155 Identity = 222/223 (99.55%), Postives = 223/223 (100.00%), Query Frame = 0
Query: 1 MLNFMCGVVLVTLTVMMTFIPITRDVALKLVYLFRLAPPFAAGNGLLNVVFTDFFSSLDQKQYTPYSLNIAGYSMIYMSVETVVYFVLVLWVEYLIRRPTVSKLLEGGSSSMAAKDCSGKDEAVLEEEDRVRREATIDTMKAGGDVVVIKDMTKTYRGGKLAVRGMSLGIPNGECFGLLGVNGAGKTTTLSILTAEFPPSSGQVWLGGYDIADNPEVVRRLVG 223
MLNFMCGVVLVTLTVMMTFIPITRDVALKLVYLFRLAPPFAAGNGLLNVVFTDFFSSLDQKQYTPYSLNIAGYSMIYMSVETVVYFVLVLWVEYLIRRPTVSKLLEGGSSSMAAKDCSGKDEAVLEEE+RVRREATIDTMKAGGDVVVIKDMTKTYRGGKLAVRGMSLGIPNGECFGLLGVNGAGKTTTLSILTAEFPPSSGQVWLGGYDIADNPEVVRRLVG
Sbjct: 4 MLNFMCGVVLVTLTVMMTFIPITRDVALKLVYLFRLAPPFAAGNGLLNVVFTDFFSSLDQKQYTPYSLNIAGYSMIYMSVETVVYFVLVLWVEYLIRRPTVSKLLEGGSSSMAAKDCSGKDEAVLEEENRVRREATIDTMKAGGDVVVIKDMTKTYRGGKLAVRGMSLGIPNGECFGLLGVNGAGKTTTLSILTAEFPPSSGQVWLGGYDIADNPEVVRRLVG 226
BLAST of EWM26294.1 vs. NCBI_GenBank
Match: gi|585108301|gb|EWM26296.1| (atp-binding cassette superfamily [Nannochloropsis gaditana]) HSP 1 Score: 439.113 bits (1128), Expect = 4.661e-155 Identity = 214/223 (95.96%), Postives = 220/223 (98.65%), Query Frame = 0
Query: 1 MLNFMCGVVLVTLTVMMTFIPITRDVALKLVYLFRLAPPFAAGNGLLNVVFTDFFSSLDQKQYTPYSLNIAGYSMIYMSVETVVYFVLVLWVEYLIRRPTVSKLLEGGSSSMAAKDCSGKDEAVLEEEDRVRREATIDTMKAGGDVVVIKDMTKTYRGGKLAVRGMSLGIPNGECFGLLGVNGAGKTTTLSILTAEFPPSSGQVWLGGYDIADNPEVVRRLVG 223
MLNFMCG++L +T++MTFIP TRDVALKLVYLFRLAPPFAAGNGLLNVVFTDFFSSLDQKQYTPYSLNIAGYSMIYMSVETVVYFVLVLWVEYLIRRPTVSKLLEGGSSSMAAKDCSGKDEAVLEEE+RVRREATIDTMKAGGDVVVIKDMTKTYRGGKLAVRGMSLGIPNGECFGLLGVNGAGKTTTLSILTAEFPPSSGQVWLGGYDIADNPEVVRRLVG
Sbjct: 1 MLNFMCGLILAMITMIMTFIPTTRDVALKLVYLFRLAPPFAAGNGLLNVVFTDFFSSLDQKQYTPYSLNIAGYSMIYMSVETVVYFVLVLWVEYLIRRPTVSKLLEGGSSSMAAKDCSGKDEAVLEEENRVRREATIDTMKAGGDVVVIKDMTKTYRGGKLAVRGMSLGIPNGECFGLLGVNGAGKTTTLSILTAEFPPSSGQVWLGGYDIADNPEVVRRLVG 223
BLAST of EWM26294.1 vs. NCBI_GenBank
Match: gi|553179804|ref|XP_005852765.1| (antibiotic transport system ATP-binding protein, partial [Nannochloropsis gaditana CCMP526] >gi|422295768|gb|EKU23067.1| antibiotic transport system ATP-binding protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 453.751 bits (1166), Expect = 2.056e-150 Identity = 222/223 (99.55%), Postives = 223/223 (100.00%), Query Frame = 0
Query: 1 MLNFMCGVVLVTLTVMMTFIPITRDVALKLVYLFRLAPPFAAGNGLLNVVFTDFFSSLDQKQYTPYSLNIAGYSMIYMSVETVVYFVLVLWVEYLIRRPTVSKLLEGGSSSMAAKDCSGKDEAVLEEEDRVRREATIDTMKAGGDVVVIKDMTKTYRGGKLAVRGMSLGIPNGECFGLLGVNGAGKTTTLSILTAEFPPSSGQVWLGGYDIADNPEVVRRLVG 223
MLNFMCGVVLVTLTVMMTFIPITRDVALKLVYLFRLAPPFAAGNGLLNVVFTDFFSSLDQKQYTPYSLNIAGYSMIYMSVETVVYFVLVLWVEYLIRRPTVSKLLEGGSSSMAAKDCSGKDEAVLEEE+RVRREATIDTMKAGGDVVVIKDMTKTYRGGKLAVRGMSLGIPNGECFGLLGVNGAGKTTTLSILTAEFPPSSGQVWLGGYDIADNPEVVRRLVG
Sbjct: 425 MLNFMCGVVLVTLTVMMTFIPITRDVALKLVYLFRLAPPFAAGNGLLNVVFTDFFSSLDQKQYTPYSLNIAGYSMIYMSVETVVYFVLVLWVEYLIRRPTVSKLLEGGSSSMAAKDCSGKDEAVLEEENRVRREATIDTMKAGGDVVVIKDMTKTYRGGKLAVRGMSLGIPNGECFGLLGVNGAGKTTTLSILTAEFPPSSGQVWLGGYDIADNPEVVRRLVG 647
BLAST of EWM26294.1 vs. NCBI_GenBank
Match: gi|1214679822|gb|OWY99345.1| (ABC transporter, partial [Phytophthora megakarya]) HSP 1 Score: 158.303 bits (399), Expect = 6.815e-41 Identity = 84/225 (37.33%), Postives = 131/225 (58.22%), Query Frame = 0
Query: 1 MLNFMCGVVLVTLTVMMTFIPITRDVALKLVYLFRLAPPFAAGNGLLNVVFTDF--FSSLDQKQYTPYSLNIAGYSMIYMSVETVVYFVLVLWVEYLIRRPTVSKLLEGGSSSMAAKDCSGKDEAVLEEEDRVRREATIDTMKAGGDVVVIKDMTKTYRGGKLAVRGMSLGIPNGECFGLLGVNGAGKTTTLSILTAEFPPSSGQVWLGGYDIADNPEVVRRLVG 223
M+NF+ GVVL+ + ++ I T+DV LV+ +RL+P F G GLLN+V + D+ + +P+S ++ G+ MIY+ V ++Y +L + ++Y + P V + G + +DEA E+ D V+ + +A D+V + + K Y GGK+AVR +S G+ GECFG LG+NGAGKTTT+ +LT + P+ G LGG+DI VRR +G
Sbjct: 276 MINFIIGVVLMVVAFILDVIESTKDVNAVLVFFWRLSPLFNLGYGLLNLVLNELTTIRESDESKTSPFSPDLMGWEMIYLFVTAILYGLLAVGIDYAMTFPKVKDWMSGNDNV--------QDEAYEEDVDVVKEAQRVANGEADSDIVKLASLRKVYHGGKVAVRNLSFGLKRGECFGFLGINGAGKTTTMKMLTGDELPTHGTATLGGFDILTQQIEVRRQIG 492
BLAST of EWM26294.1 vs. NCBI_GenBank
Match: gi|298711718|emb|CBJ32765.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 157.532 bits (397), Expect = 1.813e-40 Identity = 92/235 (39.15%), Postives = 136/235 (57.87%), Query Frame = 0
Query: 3 NFMCGVVL-VTLTVMMTFIPITRDVALKLVYLFRLAPPFAAGNGLLNVVFTDFFSSLDQKQYTPYSLNIAGYSMIYMSVETVVYFVLVLWVEYLIRRPTVSKLLEGGSSSMAAKDCSGK-------DEAVLEEEDRVRREATIDTMKAGG---DVVVIKDMTKTYR---GGKLAVRGMSLGIPNGECFGLLGVNGAGKTTTLSILTAEFPPSSGQVWLGGYDIADNPEVVRRLVG 223
N++ G++L + T+M F DV + + R+ P FA G+GL+N+ F +FF LD K YT S+ I G +++YM++ V++ L+L E R L G ++ GK DE ++E+ R A +D + GG DVV +K + K Y G K+AV+ SLGIP GECFGLLG+NGAGK++TL+IL+ E PP++G +L G+D+ NPE + RLVG
Sbjct: 1397 NWITGLILPIATTIMSLFEGAVSDVGRGMAAVLRIVPSFALGDGLMNMSFMEFFGFLDDKDYTALSMRITGNALLYMAICGVIFLGLLLVTE---RASAGGSALSGLCGRLSVGRSLGKLTPRQLGDEDEIDEDVR----AEMDRVAGGGADNDVVKVKGLRKVYPASGGAKVAVKSTSLGIPRGECFGLLGINGAGKSSTLAILSGELPPTTGSAYLSGFDVGKNPEEIHRLVG 1624 HSP 2 Score: 65.4698 bits (158), Expect = 1.279e-8 Identity = 40/106 (37.74%), Postives = 59/106 (55.66%), Query Frame = 0
Query: 125 LEEEDRVRREATIDTMK---AGGDVVVIKDMTKTYR----GGKLAVRGMSLGIPNGECFGLLGVNGAGKTTTLSILTAEFPPSSGQVWLGGYDIADNPEVVRRLVG 223
E E R E D ++ AGG+ V I+ +TK Y+ G KLAV + L + +G+ LLG NGAGKTTT+ +LT P +SG ++ G D+ + +R +G
Sbjct: 648 FESEGRDSVEPVEDELRSQVAGGECVAIRGLTKEYKNSTGGSKLAVDKLDLTMYSGQITALLGHNGAGKTTTIGMLTGMIPVTSGSAFVAGRDVKTDMVSIRNSLG 753
BLAST of EWM26294.1 vs. NCBI_GenBank
Match: gi|695400574|ref|XP_009522550.1| (ABC transporter lipid export ABCA family [Phytophthora sojae] >gi|348680017|gb|EGZ19833.1| ABC transporter lipid export ABCA family [Phytophthora sojae]) HSP 1 Score: 157.532 bits (397), Expect = 2.038e-40 Identity = 84/225 (37.33%), Postives = 131/225 (58.22%), Query Frame = 0
Query: 1 MLNFMCGVVLVTLTVMMTFIPITRDVALKLVYLFRLAPPFAAGNGLLNVVFTDF--FSSLDQKQYTPYSLNIAGYSMIYMSVETVVYFVLVLWVEYLIRRPTVSKLLEGGSSSMAAKDCSGKDEAVLEEEDRVRREATIDTMKAGGDVVVIKDMTKTYRGGKLAVRGMSLGIPNGECFGLLGVNGAGKTTTLSILTAEFPPSSGQVWLGGYDIADNPEVVRRLVG 223
M+NF+ GVVL+ + ++ I T+DV LV+ +R +P F G GLLN+V + D+ + +P+S ++ G+ MIY+ V ++Y +L + ++Y + P V + G + + DE E+ D V+ + +A GD+V + + K YRGGK+AVR +S G+ GECFG LG+NGAGKTTT+ +LT + P+ G LGG+DI VRR +G
Sbjct: 1434 MINFVLGVVLMVVAFILDVIESTKDVNAVLVFFWRFSPLFNLGYGLLNLVLNELTTIRESDETKSSPFSTDLMGWEMIYLFVTAILYGLLAVGIDYAMTFPKVKDWMSGSDNVV--------DEPYEEDVDVVKEAERVANGEADGDIVKLAGLRKVYRGGKVAVRNLSFGLKRGECFGFLGINGAGKTTTMKMLTGDELPTHGTATLGGFDILTQQIDVRRQIG 1650
BLAST of EWM26294.1 vs. NCBI_GenBank
Match: gi|953496985|emb|CEG41294.1| (atp-binding cassette superfamily [Plasmopara halstedii]) HSP 1 Score: 156.762 bits (395), Expect = 3.703e-40 Identity = 84/225 (37.33%), Postives = 132/225 (58.67%), Query Frame = 0
Query: 1 MLNFMCGVVLVTLTVMMTFIPITRDVALKLVYLFRLAPPFAAGNGLLNVVFTDF--FSSLDQKQYTPYSLNIAGYSMIYMSVETVVYFVLVLWVEYLIRRPTVSKLLEGGSSSMAAKDCSGKDEAVLEEEDRVRREATIDTMKAGGDVVVIKDMTKTYRGGKLAVRGMSLGIPNGECFGLLGVNGAGKTTTLSILTAEFPPSSGQVWLGGYDIADNPEVVRRLVG 223
M+NF+ GVVL+ + ++ I TRD LV+++RL+P F G GLLN+V + D+ +P+S I G+ MIY+ + ++Y +L + ++Y + P V + G S + DE ++ D + + + +A GD++ + ++ K YRGGK+AVR +S G+ GECFG LG+NGAGKTTT+ +LT + P+SG LGG+DI VRR +G
Sbjct: 1424 MINFITGVVLMIASFILDVIDSTRDTNAMLVFVWRLSPLFDLGYGLLNLVLHEITTIRESDETPTSPFSTQIMGWEMIYLFLTAILYGLLAVGIDYAMTFPMVKDWMSGRSET--------NDEEYEDDVDVEKEAQRVASGEADGDIIKLANLRKVYRGGKVAVRNLSFGLMQGECFGFLGINGAGKTTTMKMLTGDELPTSGTATLGGFDILTQQIEVRRQIG 1640
BLAST of EWM26294.1 vs. NCBI_GenBank
Match: gi|1214696899|gb|OWZ10303.1| (ABC transporter [Phytophthora megakarya]) HSP 1 Score: 155.221 bits (391), Expect = 1.108e-39 Identity = 90/225 (40.00%), Postives = 132/225 (58.67%), Query Frame = 0
Query: 1 MLNFMCGVVLVTLTVMMTFIPITRDVALKLVYLFRLAPPFAAGNGLLNVVFTD--FFSSLDQKQYTPYSLNIAGYSMIYMSVETVVYFVLVLWVEYLIRRPTVSKLLEGGSSSMAAKDCSGKDEAVLEEEDRVRREATIDTMKAGGDVVVIKDMTKTYRGGKLAVRGMSLGIPNGECFGLLGVNGAGKTTTLSILTAEFPPSSGQVWLGGYDIADNPEVVRRLVG 223
M+NF+ GVVL+ ++ +M+ I T DV LV+++RL+P F G GLL + D + ++ +P+S +I G+ + Y+ V +VY VL ++++Y P V + G S A D E V +E DRV + A GD V + + K Y GGK+AVR +S G+ GECFG LG+NGAGKTTT+ +LT + PPSSG LGG++I + VRR +G
Sbjct: 1362 MINFVIGVVLMIVSFIMSVIGSTSDVDSVLVFIWRLSPLFNLGMGLLQLTLNDITYIRYTKDEKTSPFSGDIMGFELAYLLVTAIVYMVLAVYLDYSKTFPKVKNEIAGIDDSTLAID-----EDVKKEADRVVYR--VANGGADGDAVKLMGLRKVYPGGKVAVRDLSFGLQRGECFGFLGINGAGKTTTMKMLTGDVPPSSGTATLGGFNILNEQIEVRRQIG 1579
BLAST of EWM26294.1 vs. NCBI_GenBank
Match: gi|673039491|ref|XP_008873706.1| (hypothetical protein H310_09422 [Aphanomyces invadans] >gi|574470487|gb|ETV97497.1| hypothetical protein H310_09422 [Aphanomyces invadans]) HSP 1 Score: 153.295 bits (386), Expect = 6.290e-39 Identity = 81/227 (35.68%), Postives = 135/227 (59.47%), Query Frame = 0
Query: 1 MLNFMCGVVLVTLTVMMTFIPITRDVALKLVYLFRLAPPFAAGNGLLNVVFTDFFSSLDQKQYTP----YSLNIAGYSMIYMSVETVVYFVLVLWVEYLIRRPTVSKLLEGGSSSMAAKDCSGKDEAVLEEEDRVRREATIDTMKAGGDVVVIKDMTKTYRGGKLAVRGMSLGIPNGECFGLLGVNGAGKTTTLSILTAEFPPSSGQVWLGGYDIADNPEVVRRLVG 223
M+N + GVVL+T+++++ + T+++ L +++RL+P F GNGL ++ ++ + Y P + + G+ + Y++VE VV+ +L + ++Y + P++ + KD + D +ED V E+ I + A D VV+K++ K Y+GGK+ + MSL +P GECFG LG+NGAGKT+T+ ILT + PS GQ LGG+DI + VRRL+G
Sbjct: 1389 MINMILGVVLMTVSIVLDIVQSTQELNKSLKFIWRLSPLFNVGNGLNSLAIFTIRATFSRDGYVPGLTAFDTKVVGWEVTYLAVEAVVFPLLAIGIDYALSFPSIK--------AAVMKDPTVVDAPYDVDEDVVAEESRIASGAADKDAVVMKNLRKVYKGGKVGIVQMSLALPKGECFGYLGINGAGKTSTMKILTGDVLPSKGQALLGGFDILTHQLEVRRLIG 1607 HSP 2 Score: 60.077 bits (144), Expect = 8.827e-7 Identity = 49/181 (27.07%), Postives = 86/181 (47.51%), Query Frame = 0
Query: 63 YTPYSLNIAGYSMIYMSVETVVYFVLVLWVEYLIRRP---------TVS-----KLLEGGSSSMAAKDCSGKDEAVLEEEDRVRREAT---IDTMKAGGDVVVIKDMTKTYR---GGKLAVRGMSLGIPNGECFGLLGVNGAGKTTTLSILTAEFPPSSGQVWLGGYDIADNPEVVRRLVG 223
+ PY+ ++ +M+ + V+Y VL L++E ++ + VS K+L G+ + K+ D LE E + + GD + IK++ K + G K++V+GM+L + + LLG NGAGKTT +S+LT P ++G + G + N +R +G
Sbjct: 594 HEPYANFRFSTALAFMAFDIVLYTVLGLYLERVVPKDYGVPEPWYFPVSMQYWRKVLRTGAVRVQDKEHVRDDVGALEGHANDTIEVVGPDLRQQEVTGDALQIKNLRKEFAVPGGIKVSVKGMNLTMYKNQITCLLGHNGAGKTTLISMLTGMLPATTGDATIHGLSLKHNLAEIRHSLG 774 The following BLAST results are available for this feature:
BLAST of EWM26294.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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