rna4387, rna4387 (mRNA) Nannochloropsis gaditana

Overview
Namerna4387
Unique Namerna4387
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2793
Alignment locationCM002463.1:456672..457461 +

Link to JBrowse

Properties
Property NameValue
Productatp-binding cassette superfamily
Orig transcript idgnl|cribi|Naga_102427g1.8501.mrna
Orig protein idgnl|cribi|Naga_102427g1.8501
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:456672..457461 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102427g1gene4231Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4387rna4387-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26296.1cds4377Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4387 ID=rna4387|Name=rna4387|organism=Nannochloropsis gaditana|type=mRNA|length=2793bp
ATGTGGGCCACGTTCTGGAGACAGTTCTCGGTTCTAACATGGAAGAACTT
CCTCCTGCGGCGAAAGAACATGGTTTCTTCACTGGTCGAGATAATGGTAC
CCGTGGCCCTTATTTTTGGTATGCTTGCAATTTACAACACGGTCAAACCT
CAACAAGTGCTCGAAATAGTGCCCGGTGACACGCGTTCGACGAGTTTTGA
TCATTTCTACGCAATCAACGGTAACCCACAATGTACTGGCTATGATTCCA
ACATCTTCTGGCGATGTCCTCTGAGGGAGGACTGCGAGCCTAGCATGTGC
GACAAGTTGGTGTTTGCGGTAGCTCCGTCCTCCAACACTGATGCAGCAGC
AGCCGAAGCTGCCAATGCCCTGCAGCTCCGTGTGCAAGACTTGACAAACT
CCAGCGTGTCGACACTACTTTTCCCTTCGGAGGCAGACTTGGATGCATAC
ATTGCTCAACCGGACTACGCTGTCAACACGACCCTAAAAAATATCGGCGT
GGCAGTTGTCTTCGATTCAGGTGCCCCCAACTGGCACTACCATTTGCGCG
TGAACCGGACCGTGAATGAAGGGTATACCTACAATCTTCCGCCGACCACG
CTGAGCACAGATAGCCTCTTAAAGAACCCGAATGACCGGCCTAAGGCATG
CTCGCGATGCATAGCACAGTATCTAGAGACTTGGTACTACTCAGGGGCGC
TAGCAGTGCAAAATCTGGTAGATTCATTCATCATCTCGCAAGCCGCCGGC
GCACCACGGAAGCTAACAGCCGCCGTGGTCAACTTTCCATCCCCTGGCTA
CACCGAAGCAGGATTTTGGGGCCAGGTGCAGTCCTTCTTCCCCTTGCTCA
TGATTTTAGCCATATTGTACACCGTCACAAATGTGGTGCGGAGTTTGGTT
ACTGAGAAAGAGGCTCGCATTCGGGAGGGTATGCGAATGATGGCCTTGAC
GGACTCGGCACTGTATGCGAGCTGGGTGTTCCATTTTGCTACGACCTTTA
CCATCATCGCGGCCCTGATCGTGCTGGTGGGGGGCAAACTTTTTCAGCAT
TCGGACAAGGGATTGGTGTTTGCGTTCTTTCTGCTCTTCTTCTTTGCAAC
GATGGCGTTCGCGTTTTGGATGTCGACATTTTTCAGCAAGAGCAAGACGG
CGGCGAGCTTGGGCATCATGCCTTACTTCGCTGGTTATTTTCTGACGATG
GCCTTGAAGCCTGCCTCGGGCCGCAGCGTGAAGCTACTGGCTTCCTTGCA
CCCTGCAGCGGCGTTTGCACTGGGTATTAGTGCTTTCACTGAGTATGAGG
ACGCACAGCAAGGCGTGACGCTGTTCACATTTGCAACCTCCGCGAACGGG
AACTTTGCTTTCTCGGATGCGTTGGGCATGCTACTGGTGGACGTCTTTGT
GTATGCTTTTCTGTTTTGGTATTTTGAGAAGGTTTGGCCGAACGAGGTTG
GAATGCGTTTGCCACCGTATTTTTTGTGTATGCCATCATACTGGAACTCT
TGCCTTGGTATTGGTAGAGGCGAGGTAAGGCCCTTACACGAGGGAATAAG
CAACTCTTCCGGAGAGCTAAAGCAAGAATCGGGGCCCGACGTGGAGCGTG
TGCCCGACACCTTGGCGCAGCAAATCAAAGAAGGGAAGTGCATCTGTATA
CGGGACATGTGCAAGACGTTCTCGACCAACACGGGGCCCAAGCATGCGGT
GGACCACCTGAACCTGACCATGTACTCCGGGCAGATCACGGCTTTGTTGG
GTCACAATGGCGCAGGCAAGTCAACAACGATCGGTATTTTGACGGGGCTG
ACGGCTCCGACATCAGGCGTGGCGATCATCAACGGCATGGACGTGTCGCA
AGACATGCAAAGCATCCGGCACAGCTTAGGAGTGTGTCCGCAGCACGACG
TGTTGTTTGCGGACCTGACGGTGGAGGAGCATCTGACGCTTTTTGCGAAT
TTCAAGGGCATGCAACGATCGGAAGTTCAAGCTGCAGTGACTAGCATGAT
TGCGGAGGTCGGCTTGACAGAGAAGCGCAAGGTAGCGAGCAAGAACTTAT
CGGGAGGCATGAAGCGAAAGTTGAGTCTCGGCATAGCTTTTATAGGAGGC
AGCAAAGTGGTGATCTTGGACGAGCCCACGTCAGGCATCGATGCGTATTC
TCGGCGCTTTGTCTGGAATGTAATTCGCAAGTATAAGGAAGGCCGCACAA
TCATTTTGACGACGCATTTCTTGGAAGAGGCTGACCTGCTTGGCGATCGT
ATCGCGATCATGGCGAAAGGCAAGTTGCGTGCATGTGGTTCTTCTCTCTT
TCTGAAGAACAATTTCGGAGTGGGCTACAATCTGACTATCGAGAAGAAAG
CTGCAGCAGATGCGACGCGCATTCAACGGTACGTGCAAAACAAGGTGCAA
GACGCGAAGGTGTTGAGCTGTGTAGGTGCAGAGATCTCTTTTCAGTTGCC
TCGAAACAGTGCGGAAGACTTCAAGGCGCTGTTTGAAGGCTTGGACAATC
ATCAGGAGGCTTTAGGTTTGGAGCACTATGGTGTCTCAGTAACGACGCTG
GAGGAGGTGTTCATCCGTGTGACGCGAGGGGATGAGATCGACGTGGAAGC
CAAGGCTGCAATCTCCGTGCGCCGCAACAGTTTGGAAGAACGTCGGAGAA
GCTTGGAAGAGTCGCGCCGGCTTAGAAATAGCTTATCTTGTACTTTTGAT
GAGAGGGGATCACATGATGAGAGTCATAAGGGACTGGGCGCTGCTTGTCA
AAAAGATATATCTTCTGGAGATATGTGGAGAAATTACGCATAG
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protein sequence of rna4387

>rna4387-protein ID=rna4387-protein|Name=rna4387|organism=Nannochloropsis gaditana|type=polypeptide|length=246bp
MLNFMCGLILAMITMIMTFIPTTRDVALKLVYLFRLAPPFAAGNGLLNVV
FTDFFSSLDQKQYTPYSLNIAGYSMIYMSVETVVYFVLVLWVEYLIRRPT
VSKLLEGGSSSMAAKDCSGKDEAVLEEENRVRREATIDTMKAGGDVVVIK
DMTKTYRGGKLAVRGMSLGIPNGECFGLLGVNGAGKTTTLSILTAEFPPS
SGQVWLGGYDIADNPEVVRRLVGYCPQFDALFDLLTGQEHLELYAR
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mRNA from alignment at CM002463.1:456672..457461+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4387 ID=rna4387|Name=rna4387|organism=Nannochloropsis gaditana|type=mRNA|length=790bp|location=Sequence derived from alignment at CM002463.1:456672..457461+ (Nannochloropsis gaditana)
ATGTTGAACTTCATGTGTGGTCTCATCCTTGCTATGATAACCATGATAAT
GACATTTATTCCGACGACCCGCGATGTGGCTTTGAAATTGGTGTATCTTT
TCAGGCTCGCTCCGCCATTCGCTGCAGGAAATGGGCTCTTGAATGTCGTC
TTCACGGACTTCTTTTCGTCGCTGGATCAGAAACAATACACACCATACTC
GTTGAACATCGCCGGGTACTCTATGATCTACATGAGTGTGGAGACTGTAG
TATATTTCGTCCTGGTCTTGTGGGTCGAGTACTTGATCCGTCGTCCTACC
GTATCGAAGCTTTTAGAGGGCGGCTCTTCGTCGATGGCTGCAAAGGACTG
CTCTGGAAAAGACGAAgccgtgctggaggaggagaatcgcGTGCGTCGCG
AGGCAACGATAGACACAatgaaagcgggaggggatgTCGTGGTGATCAAG
GACATGACCAAGACGTATCGTGGCGGGAAACTAGCTGTGAGGGGCATGTC
TCTTGGCATCCCTAATGGGGAGTGCTTCGGTCTGCTTGGTGTGAACGGTG
CAGGCAAAACGACCACGCTGAGCATTCTGACAGCTGAGTTCCCGCCGTCG
TCAGGGCAGGTGTGGCTTGGCGGGTACGACATCGCCGACAATCCGGAAGT
GGTTCGCCGCCTGGTAGGGTACTGTCCTCAGTTCGACGCTCTTTTCGATC
TGCTGACTGGTCAGGAGCATTTGGAGCTGTACGCCCGTGTGAAGGGGTTG
AGCGAGGCGCAAGTGAAGACGGTGGTAGCGCGGAAAGTAA
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Coding sequence (CDS) from alignment at CM002463.1:456672..457461+

>rna4387 ID=rna4387|Name=rna4387|organism=Nannochloropsis gaditana|type=CDS|length=1482bp|location=Sequence derived from alignment at CM002463.1:456672..457461+ (Nannochloropsis gaditana)
ATGTTGAACTTCATGTGTGGTCTCATCCTTGCTATGATAACCATGATAAT
GACATTTATTCCGACGACCCGCGATGTGGCTTTGAAATTGGTGTATCTTT
TCAGGCTCGCTCCGCCATTCGCTGCAGGAAATGGGCTCTTGAATGTCGTC
TTCACGGACTTCTTTTCGTCGCTGGATCAGAAACAATACACACCATACTC
GTTGAACATCGCCGGGTACTCTATGATCTACATGAGTGTGGAGACTGTAG
TATATTTCGTCCTGGTCTTGTGGGTCGAGTACTTGATCCGTCGTCCTACC
GTATCGAAGCTTTTAGAGGGCGGCTCTTCGTCGATGGCTGCAAAGGACTG
CTCTGGAAAAGACGAAgccgtgctggaggaggagaatcgcGTGCGTCGCG
AGGCAACGATAGACACAatgaaagcgggaggggatgTCGTGGTGATCAAG
GACATGACCAAGACGTATCGTGGCGGGAAACTAGCTGTGAGGGGCATGTC
TCTTGGCATCCCTAATGGGGAGTGCTTCGGTCTGCTTGGTGTGAACGGTG
CAGGCAAAACGACCACGCTGAGCATTCTGACAGCTGAGTTCCCGCCGTCG
TCAGGGCAGGTGTGGCTTGGCGGGTACGACATCGCCGACAATCCGGAAGT
GGTTCGCCGCCTGGTAGGGTACTGTCCTCAGTTCGACGCTCTTTTCGATC
TGCTGACTGGTCAGGAGCATTTGGAGCTGTACGCCCGTTAAATGTTGAAC
TTCATGTGTGGTCTCATCCTTGCTATGATAACCATGATAATGACATTTAT
TCCGACGACCCGCGATGTGGCTTTGAAATTGGTGTATCTTTTCAGGCTCG
CTCCGCCATTCGCTGCAGGAAATGGGCTCTTGAATGTCGTCTTCACGGAC
TTCTTTTCGTCGCTGGATCAGAAACAATACACACCATACTCGTTGAACAT
CGCCGGGTACTCTATGATCTACATGAGTGTGGAGACTGTAGTATATTTCG
TCCTGGTCTTGTGGGTCGAGTACTTGATCCGTCGTCCTACCGTATCGAAG
CTTTTAGAGGGCGGCTCTTCGTCGATGGCTGCAAAGGACTGCTCTGGAAA
AGACGAAgccgtgctggaggaggagaatcgcGTGCGTCGCGAGGCAACGA
TAGACACAatgaaagcgggaggggatgTCGTGGTGATCAAGGACATGACC
AAGACGTATCGTGGCGGGAAACTAGCTGTGAGGGGCATGTCTCTTGGCAT
CCCTAATGGGGAGTGCTTCGGTCTGCTTGGTGTGAACGGTGCAGGCAAAA
CGACCACGCTGAGCATTCTGACAGCTGAGTTCCCGCCGTCGTCAGGGCAG
GTGTGGCTTGGCGGGTACGACATCGCCGACAATCCGGAAGTGGTTCGCCG
CCTGGTAGGGTACTGTCCTCAGTTCGACGCTCTTTTCGATCTGCTGACTG
GTCAGGAGCATTTGGAGCTGTACGCCCGTTAA
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Synonyms
Publications