rna4376, rna4376 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4376
Unique Name	rna4376
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2943
Alignment location	CM002463.1:420386..422684 +

Link to JBrowse

Properties


Property Name	Value
Product	26s proteasome non-atpase regulatory
Orig transcript id	gnl\|cribi\|Naga_100093g13.5094.mrna
Orig protein id	gnl\|cribi\|Naga_100093g13.5094
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:420386..422684 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100093g13	gene4220	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4376	rna4376-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26297.1	cds4366	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:420386..422684+
coding sequence from alignment at CM002463.1:420386..422684+

mRNA sequence

>rna4376 ID=rna4376|Name=rna4376|organism=Nannochloropsis gaditana|type=mRNA|length=2943bp
GGATGTAGTCCCCGTTGCGTGTCCATTCACTGTTATCCACGCATATTATA
GTGGTCTCCAGGGGCATGCTCGCACTAGTCTACCCGCCTAGAAGCAGTAG
AAGCAACGGACAGCTGTTGGAAACAGATGGACAAAAATGAGTCCCAGCGT
CTTATGGACCAGCCCTCTATCATAAACTCATATGAAATGCGCAACGCTCC
CAAGGCGTGTGTGCATATTGCGCTACCGCTTGCTGAGACTCCGCTCAAAA
GGGGGGACCATGCTCGGGCCTCGAACCAGAAAGCGAGCTTCTTCGGAATT
CCGTCGAGGGAACACATGCTCATGGACTTAACATATATGGACGGCCTTAC
CGTGCCCTTACGAGCGACTTGAGAGGGTTTACAGCCCTCGAAGGGTGGTT
TCCATCACAAACCTTCGTGTATCGACGGTGCGCATGTCGACGGATGGAAA
AAGTCCTTGTCAGAGGTGCTTGGTCGAAAAAGTGCTTATTGCCTTGAGGT
CTGTTTGATAAGCCGGAGCGTACTTTTTACGTTTTTCTGGCATTTCTTCT
GCCTCTTTGTTGCCCGTTTTTTTCAAATATTGTCGTTGCGACACAAAACA
CCACTGCATCATTACCTTCATGATAATGCATGTTCGCACATAGGCGGTAA
TGGTGCGTCGAAAACTATCCGGACCGACGGGCGTGCTTCTATCGGTGATC
GCTACGATCCCGTCCCTGCTTTTGTTCACCAGCACTGTCACGACCAATGC
CCTGCCCAATGGACTGGGACTGACTCCTGCTATGGGTTTTAATACTTGGA
ACCGGTTTCACTGCGACATTGACGAGGCCATGGTGAAAGAAACGGCCCGA
CTTTTGATCGACACAGGCTTACGGGACCTGGGCTACGTCTTCGTGAACTT
GGATGACTGCTGGATGGCAAGAAATCGAAGCGCAGAAGGTGGCTTGGTGG
AGGACCCCGTCAAGTTTCCGTCGGGTATCAAAGGGTTGGGGGACTACTTG
CACGCGTTGGGGTTCAAATTTGGCATCTACAGCAGCGCCGGCTCCGCGAC
CTGTGAGGGGTTTCCGGCGTCCTTGGGGATGGAGGGAAGGGACGCCGAAA
CCTGGTCGGAATGGGGAGTGGACTACTTGAAATATGACAATTGCCACACA
GACGGGACGTCGCCCCAAGAGCGGTACCCGCCCATGCGCGACGCCCTGAA
TGCCACCGGCAGACCCGTCCTCTATTCCATGTGCGAATGGGGCCTGGACA
ATCCGGGCGCATGGGCGCCGGCGGTGTCGAACCTGTGGCGGACCACGCCG
GATATCCGGGACGAATGGTCCTCGGTGATGGAGATCGTGGAGATCAATGG
GCGTCGATGGCGGTACGCGGGTCCGGGGGGGTTCAACGACCCGGACATGT
TGGAGGTGGGGAACGGAGGCATGGGGCTGGAGGAGTACCGGGCGCACATG
TCTCTGTGGTGCGTGATGAAGGCGCCGCTTCTGATCGGCTGTGACTTGCG
GGGGGCAACTATGGACGTGCTGGCCTTGCTCGGAAACGAGGAGGTGATTG
CGGTCAATCAGGACCCGCTCGGGGTGCAAGCGCGGCGAGTGTGGAGCTCT
GGCTCGGGAGGGGGAAGGGGGGTGGGAAAGGGAGGGAGCCCGGGAAGCCC
TTTCCCTGCTATTGTCGTGCCCTGTGCACTGGCGCCGGAAAAAGGCGAAG
ACGCCGTCTGGTGGATCCTGGAGCCGGCGGGCCTCGCGGAGGTGGCGGAG
GGGGGGGGGGGGGCGCGAGGACCTTCGGACTCCGGGGGGGGAGCAGAGCT
CGTTTCAGTGCGCTCGGTGGGTAGTGGAGGGGGGAAGGGTACAGTCCAGT
ATTGCCTGGCCGTCAAGGAGGGCCTGGGGGGCCATGGCCGGGTGGAAGGG
GAGGAAATCACGCGCGTGATGAGGTTGAGATGGGAGGGGGACAGCATGGA
GGAAGGAGTCAGGAAGAAAGAGGCCTCGGTCACGGGAGGACGGCAAGACG
TAGCCCAGGAAGACGACGCAGACGCCGGCATGCCGCTGTCTAGCGTCGGT
TTGCGCGTGACGCTCGCTCCTTGTCTGGGCCCCGCCCCTTTCTCCCTTTT
CGAGCGCACAGGGAAGGAGCAGCTGTGGCGGCGGAAAGGCTCCTTGCTGA
TGCCTGAATCGGCCCCCCACCTCTGTTTGGGCGTGATTCGGAGCAACCAG
GACCCACTGCGGACGGGGCTCGCGGTCGAGCTGGCTCCTTGCAATGCCAG
CCTCCCCCGGCAGCAGTGGGAGACGGAGGCCGGGCCGGGGTCGCTCAGAG
CAGAAGGGATGGGTACTCCGGGTGCGGAGGAATCTAAAGCAGCTTGGTTC
GGGGGGGAAGAGCCCTTGCGTTCTTCCTCCGTTTGGGCCCCGCCTGTGGG
GGGACTGGGCTCGTCCTCGCCTCAGCTTCTCGTCAACGCTTTCCAACACC
AGTGCCTAGCGCCCGAGACCGACGCCCCCGCCGGTGCTCAAGAAATTTGG
ATTGGGCCGCTTTCCGGTGGTGCCTTTGTGCTCCTTCTCTTCAATCGGAG
CACGGTCTCCGCTCGCATATCGGCGCTTTGGCGTGACTTGGGCCTCGGGC
TGGAGGAGGGCAGCTACGAAGCGCGGGATCTCTGGGCCCGACGGACCCTG
CCGCCCGCATCGGTGGCCGATGGGATCAGGGACTGGGAGGTCCCAGGACA
CGGAGCAGCCATGTTCAAGCTCTCGCCCAAGCCCGCTCTGTAGGTGTGAT
GGTTGAAAGCACGGAGTATCTTGGGGAGGGGTCCTTTCTCGAAGCAAGCG
TGCGTGGTGAAGACTGAGAAAAGATACGTGACAAACAAATGAAGAATGTG
AGGGCATGTCAATGTTGGGGATCTTTGTGGATAGGAATTGTAGAGAAAAT
TGAACGATAAAAGTAGACAAAAAAGTACACGGTCATATGCAGG

protein sequence of rna4376

>rna4376-protein ID=rna4376-protein|Name=rna4376|organism=Nannochloropsis gaditana|type=polypeptide|length=413bp
MPLETTIICVDNSEWTRNGDYIPTRFEAQHDAVNLVTGAKTQQNPESTVG
VLTMAGRGVELLVSPTDDIGKLLSCLHSVRMGGRVDMAGAVQVAQLALKH
RRNKNGSQRVVVFVCSPVEADAKTLVKVGKQLKKNGIAVDVVSLGEIEEN
QEKLQEFVEATNSNSNSHLVSIPAGFLPSDVLVTSPIIHGGEEGSEGAGM
GAGAGGGGAGFGGTSGLGDFGGVDAQSDPALAMALRVSYEEERARQEAAA
KAAAATEGENEGEAKGMAMETEAGASSSGTAAAAAASMGGEVDEEEEALL
KQALAMSMADSGSSSSLENKGKTAASGTGSGETAGAGQGEGAPMDMEDED
AAYQLALKMSMEEEGGGAGGGIYGCDHGHGSRGRSIVGCPRSAHIRGSGV
CDEPAGLVGRSRS

mRNA from alignment at CM002463.1:420386..422684+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4376 ID=rna4376|Name=rna4376|organism=Nannochloropsis gaditana|type=mRNA|length=2299bp|location=Sequence derived from alignment at CM002463.1:420386..422684+ (Nannochloropsis gaditana)
GCAATAAGCACTTTTTCGACCAAGCACCTCTGACAAGGACTTTTTCCATC
CGTCGACATGCGCACCGTCGATACACGAAGGTTTGTGATGGAAACCACCC
TTCGAGGGCTGTAAACCCTCTCAAGTCGCTCGTAAGGGCACGGTAAGGCC
GTCCATATATGTTAAGTCCATGAGCATGTGTTCCCTCGACGGAATTCCGA
AGAAGCTCGCTTTCTGGTTCGAGGCCCGAGCATGGTCCCCCCTTTTGAGC
GGAGTCTCAGCAAGCGGTAGCGCAATATGCACACACGCCTTGGGAGCGTT
GCGCATTTCATATGAGTTTATGATAGAGGGCTGGTCCATAAGACGCTGGG
ACTCATTTTTGTCCATCTGTTTCCAACAGCTGTCCGTTGCTTCTACTGCT
TCTAGGCGGGTAGACTAGTGCGAGCATGCCCCTGGAGACCACTATAATAT
GCGTGGATAACAGTGAATGGACACGCAACGGGGACTACATCCCGACACGT
TTTGAGGCGCAACACGACGCGGTCAACCTGGTGACGGGCGCCAAGACACA
GCAAAACCCGGAGAGCACCGTGGGGGTTCTGACCATGGCCGGGCGGGGTG
TCGAGCTCCTCGTTTCTCCCACGGACGACATTGGGAAGCTCCTGTCCTGC
CTTCATAGTGtcaggatgggaggaagggtcgaCATGGCGGGCGCGGTACA
AGTGGCGCAGCTGGCTTTAAAACACAGACGAAATAAGAACGGGAGCCAGC
GCGTGGTAGTCTTTGTCTGCAGCCCCGTGGAGGCCGACGCGAAGACATTG
GTCAAGGTGGGCAAGCAGCTTAAAAAGAATGGGATTGCTGTAGACGTGGT
GAGCCTGGGGGAGATCGAAGAGAACCAGGAGAAGCTGCAGGAGTTCGTGG
AGGCGACCAATAGCAACAGCAACTCCCACCTGGTTTCCATCCCGGCGGgt
ttcctcccgtccgacGTTCTTGTCACCTCCCCTATCATCcacggcgggga
agaaggcagcgAGGGCGCTGGGATGGGTGCaggtgcggggggaggcgggg
cgggtTTCGGTGGAACTTCGGGACTCGGAGACTTTGGAGGCGTGGACGCG
CAGAGCGATCCGGCCTTGGCCATGGCCCTGCGAGTCTCCtacgaagagga
gcgggcgcggcaggaggcggcagcaaaggcggcggcggcgacagaggggg
aaaacgagggggaggcgaaggtagggacggggcgggcgtggattaggcga
ccggggggggaacaCACGGGCTGtaagggggggatgggggggtaCTTATC
TTCCCATTCACTTGGTTGCTGACGCCTCTTCTTGGATgtatttttccttt
tcaggGAATGGCGATGGAGACCGAGGCAGGCGCGTCGTCCTCGGgaaccg
ccgccgccgccgctgcgtCCATGGGCGGGgaagtggacgaggaggaggag
gccttgtTGAAGCAGGCGCTTGCCATGTCGATGGCAGACTCGGGAAGCAG
CTCCAGTCTGGAGAAtaaggggaagacggctgCGAGTGGCACCGGGAGCG
GAGAGACTGCCGGGgcaggacaaggggaaggggcccCGATGGATatggag
gatgaagatgcCGCGTACCAACTCGCCTTGAAGATgtccatggaggaaga
gggaggaggcgccgggggggggatctACGGGTGCGACCACGGGCACggaa
gcagggggagaaGCATCGTCGGCTGCCCCCGCAGCGCCCACATTCGCGGA
TCCGGAGTTTGTGATGAACCTGCTGGGCTCGTTGGAAGGAGTCGATCCTA
ACGACCCCACCATCCGCGCCACCCTGGAGTCGATGGGGATCAAGCCGCCG
GGAActgaggagaggaaggatggagaaggcggagggggctcGAAGtgaag
ggtggagggggaaagggtcTGATGAAGAGTGGGACACTGTGTAAAAACCC
ACGGGGCCTAGAGAAGAGAGGAGTCGGGCGACCGAGTCTTTGACAGGCAA
CTTTCAGGAGATAGAGTCCCATGGCTTACAAGGGTAGAGGCGTATCAGCG
GGGAGATGTACAACAATTGTGTACGTTCCAAAGCGTAGTGCTCATAATGG
AAAAAGACCAGCGTGACGGAGCGAGGGATGAGTCAAATTAAAAGGCCCAT
TGTAGattgcttttcctttccgtaGCCATTGATGCCACGTCCCAGGCAGG
GTCCTTACATGACGAGCCAAGGCTTGACACCTTCTGAAACTGAAAGTCTC
AATTAAATGCCGGGCATGAGGAAAAAACAAATTTGATATCAGAGTGATA

Coding sequence (CDS) from alignment at CM002463.1:420386..422684+

>rna4376 ID=rna4376|Name=rna4376|organism=Nannochloropsis gaditana|type=CDS|length=2484bp|location=Sequence derived from alignment at CM002463.1:420386..422684+ (Nannochloropsis gaditana)
ATGCCCCTGGAGACCACTATAATATGCGTGGATAACAGTGAATGGACACG
CAACGGGGACTACATCCCGACACGTTTTGAGGCGCAACACGACGCGGTCA
ACCTGGTGACGGGCGCCAAGACACAGCAAAACCCGGAGAGCACCGTGGGG
GTTCTGACCATGGCCGGGCGGGGTGTCGAGCTCCTCGTTTCTCCCACGGA
CGACATTGGGAAGCTCCTGTCCTGCCTTCATAGTGtcaggatgggaggaa
gggtcgaCATGGCGGGCGCGGTACAAGTGGCGCAGCTGGCTTTAAAACAC
AGACGAAATAAGAACGGGAGCCAGCGCGTGGTAGTCTTTGTCTGCAGCCC
CGTGGAGGCCGACGCGAAGACATTGGTCAAGGTGGGCAAGCAGCTTAAAA
AGAATGGGATTGCTGTAGACGTGGTGAGCCTGGGGGAGATCGAAGAGAAC
CAGGAGAAGCTGCAGGAGTTCGTGGAGGCGACCAATAGCAACAGCAACTC
CCACCTGGTTTCCATCCCGGCGGgtttcctcccgtccgacGTTCTTGTCA
CCTCCCCTATCATCcacggcggggaagaaggcagcgAGGGCGCTGGGATG
GGTGCaggtgcggggggaggcggggcgggtTTCGGTGGAACTTCGGGACT
CGGAGACTTTGGAGGCGTGGACGCGCAGAGCGATCCGGCCTTGGCCATGG
CCCTGCGAGTCTCCtacgaagaggagcgggcgcggcaggaggcggcagca
aaggcggcggcggcgacagagggggaaaacgagggggaggcgaaggGAAT
GGCGATGGAGACCGAGGCAGGCGCGTCGTCCTCGGgaaccgccgccgccg
ccgctgcgtCCATGGGCGGGgaagtggacgaggaggaggaggccttgtTG
AAGCAGGCGCTTGCCATGTCGATGGCAGACTCGGGAAGCAGCTCCAGTCT
GGAGAAtaaggggaagacggctgCGAGTGGCACCGGGAGCGGAGAGACTG
CCGGGgcaggacaaggggaaggggcccCGATGGATatggaggatgaagat
gcCGCGTACCAACTCGCCTTGAAGATgtccatggaggaagagggaggagg
cgccgggggggggatctACGGGTGCGACCACGGGCACggaagcaggggga
gaaGCATCGTCGGCTGCCCCCGCAGCGCCCACATTCGCGGATCCGGAGTT
TGTGATGAACCTGCTGGGCTCGTTGGAAGGAGTCGATCCTAAATGCCCCT
GGAGACCACTATAATATGCGTGGATAACAGTGAATGGACACGCAACGGGG
ACTACATCCCGACACGTTTTGAGGCGCAACACGACGCGGTCAACCTGGTG
ACGGGCGCCAAGACACAGCAAAACCCGGAGAGCACCGTGGGGGTTCTGAC
CATGGCCGGGCGGGGTGTCGAGCTCCTCGTTTCTCCCACGGACGACATTG
GGAAGCTCCTGTCCTGCCTTCATAGTGtcaggatgggaggaagggtcgaC
ATGGCGGGCGCGGTACAAGTGGCGCAGCTGGCTTTAAAACACAGACGAAA
TAAGAACGGGAGCCAGCGCGTGGTAGTCTTTGTCTGCAGCCCCGTGGAGG
CCGACGCGAAGACATTGGTCAAGGTGGGCAAGCAGCTTAAAAAGAATGGG
ATTGCTGTAGACGTGGTGAGCCTGGGGGAGATCGAAGAGAACCAGGAGAA
GCTGCAGGAGTTCGTGGAGGCGACCAATAGCAACAGCAACTCCCACCTGG
TTTCCATCCCGGCGGgtttcctcccgtccgacGTTCTTGTCACCTCCCCT
ATCATCcacggcggggaagaaggcagcgAGGGCGCTGGGATGGGTGCagg
tgcggggggaggcggggcgggtTTCGGTGGAACTTCGGGACTCGGAGACT
TTGGAGGCGTGGACGCGCAGAGCGATCCGGCCTTGGCCATGGCCCTGCGA
GTCTCCtacgaagaggagcgggcgcggcaggaggcggcagcaaaggcggc
ggcggcgacagagggggaaaacgagggggaggcgaaggGAATGGCGATGG
AGACCGAGGCAGGCGCGTCGTCCTCGGgaaccgccgccgccgccgctgcg
tCCATGGGCGGGgaagtggacgaggaggaggaggccttgtTGAAGCAGGC
GCTTGCCATGTCGATGGCAGACTCGGGAAGCAGCTCCAGTCTGGAGAAta
aggggaagacggctgCGAGTGGCACCGGGAGCGGAGAGACTGCCGGGgca
ggacaaggggaaggggcccCGATGGATatggaggatgaagatgcCGCGTA
CCAACTCGCCTTGAAGATgtccatggaggaagagggaggaggcgccgggg
gggggatctACGGGTGCGACCACGGGCACggaagcagggggagaaGCATC
GTCGGCTGCCCCCGCAGCGCCCACATTCGCGGATCCGGAGTTTGTGATGA
ACCTGCTGGGCTCGTTGGAAGGAGTCGATCCTAA

Synonyms

Publications