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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100093g17.5105.mrna |
| Orig protein id | gnl|cribi|Naga_100093g17.5105 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002463.1 | supercontig | CM002463.1:407787..409989 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4372 ID=rna4372|Name=rna4372|organism=Nannochloropsis gaditana|type=mRNA|length=960bp
ATGTGGCGGCCACTTCCCTTGGTTGTCTTATTCTGGGCCTGGACCGCGTG
GGGTTTTTCCTCTCCGCTACTTCCTGACGCCCTTCTCGCGGCTCGCCCAC
GCAGCCGCGGCCCGCGACATGCCAGCGCGAGCTATGCGGGAAGGAAAAGC
ACGAGTCCTTTTACAATGATGGCGGTGGAGCTGAAGGTGAATGACCGTGT
CTGTGTTATAGGCTCAACAGGTGGTTGCGGGCAACTTATCACGGCTCGAT
TGGTCGACGAGGGGAGGTATCAAGTGAAGGCAGTTGGACGCAGTGAGGCG
AAGCTACGCGAGGTCTTGGGAGGCGAGAGCCCCAAACTTGAATTTGCCGA
AGCGGACTCCCGTGATATCGACTCCTTGTATGGCCCCTTAAGCGACGTAG
ACTGTGTCATCATTGCCACGGGCACCAGTGCTTTCCCTTCTCCCCGATGG
CGGGGGGGCAATACCCCAGACGCAGTTGACCGCAAAGGCGTTCAGAACAT
ACTAAAAGCTATCACGAGCAAACCTCGAAAGCGGACCGTGAAAAAAGTGG
TCTTTTTGAGCTCGGTGGGAGTGCTTCGCACCAAGCAGCTGCCCTATTCG
ATACTGAACGCATTTGGCGTGCTGGACGCAAAACGGGACAGCGAGGACCT
GCTCAGGCAGATGGCAGCCACCGAGGGCTTCGACATCTTGATCGTCCGGC
CCGGCCGGCTAGTGGGCGGCCCCTGGACGAACACGGACGTCTCGGCCCTG
CTCAAGGTGGAGGAGGGGGCACGGAAACGCGTCGTGGTGGAGCAAGGCGA
CTCCCTGGTCGGAGACGCCGCCAGGGTCTCGGTCGCGGAGCTGGTGGTCC
GGGCCTTGGGGCGGCCAGAGGCCATGGGCCGAGCACTCTGCGTAGTGAAC
GAGGAAGGCCCCCCTTTCTCGGAGGGGCAGTGGACTGCCTTGTTTGAGGG
CTTGGCTTGA back to topprotein sequence of rna4372 >rna4372-protein ID=rna4372-protein|Name=rna4372|organism=Nannochloropsis gaditana|type=polypeptide|length=288bp
MGTCPSASVFVLLLVLLVSISLTSVMAAAEPTLSRKEHLDAKRAFDRVKQ
HPVTDGDGPLIEYKAADGTMKTMTQADLQQRLQQQDAVLPQLNEDGSTLT
KSEEGKATLEELKTKDPYLSRMVEASQFALHRLQADGALDKEMRLKSLHT
VEEEGPEGTSTLDADHIKLHLRLVVEDETMHQEEVEVLLEGGDGHGALTH
AWRLVGEDKVAIALSFPEASPPASSWGWLSVLTGVINGERVLLTGREWSP
GMVWMLGGGFVCVAVGLTLVVTSAVGKKSGRGASRKGD back to topmRNA from alignment at CM002463.1:407787..409989+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4372 ID=rna4372|Name=rna4372|organism=Nannochloropsis gaditana|type=mRNA|length=2203bp|location=Sequence derived from alignment at CM002463.1:407787..409989+ (Nannochloropsis gaditana)
CTGGGGCTCGTCTCCCACTGTGCGAATGGGCGTGGGAATTGGGTGTGGGG
GATGCGGCAATGGGCTGAAAGTTCCGAGGGGTCGTCGCTTTTTCTTGCTc
acctcgctccttctcctgcgtcCCCTGAAGACTTGACTTACCGGCCACCT
TTTCTAATATTTGCCAGCGTGACCAAAGCCAATAAGGACTACACAGCTCT
TTGACGCACAATCGTACATCAGGAACCCATGGGAACATGCCCTAGCGCGT
CAGTCTTTGTTTTGTTGCTCGTGCTTCTTGTAAGCATCAGCCTCACTTCA
GGTACGGATCATAACATGTGTGAGCTTGACTTCAATCGTGCGAGCTTCAT
TTGCAACACATTTATACACATGCGCGCCTTCAGTAATGGCTGCGGCTGAG
CCCACTCTCTCTCGGAAGGAACATTTGGATGCTAAGAGGGCTTTTGACCG
GGTAAAGCAACACCCTGTGACGGACGGAGATGGGCCCCTCATTGAATACA
AGGCAGCAGACGGGACCATGAAAACCATGACACAGGTGAGCAAAGGCACA
GTCGTTCAATACAGGAAAGGATTCTACGCGTACTCTAGTACTCAGGAAGG
TCAATTCAATAGACGAGACCAGGGAATGTTACCCTTCCCACCCAGATCTC
ACCTTCCTTTTGTGTTCGATTGCCTAGGCCGACCTCCAGCAGCGtctgca
gcagcaagacgCCGTGCTCCCCCAGCTGAACGAGGACGGCAGCACACTGA
CCAAatcagaggaaggaaaagccaCGCTTGAGGAGGTGCGTGGCACGGTA
CATCTATTGGGGGGATGGATTGGAATCCTCAGGACATCGGAAAAAATAAG
AAGCcatcgaagggagggggaaaaggaattTCGCGCTCAGACATATCCCT
CCATACACAGCTGAAGACCAAGGACCCCTACTTGTCGCGCATGGTCGAGG
CCTCCCAGTTTGCATTGCACAGGTCCGTCTCCCATGTCTGATAAGGACGG
TGAAAGGCACCTGTTGTCCCTGTGCCGTTGTCACAGCTTTTAAAACAACA
CACACGACGATTCACTCATGCTTTACAGACTGCAAGCGGACGGGGCGCTG
GACAAAGAAATGCGGCTGAAGTCACTCCATactgtggaggaggagggacc
tgAGGTAAGGAGGCGCCCTCATACCGAAGCTGTCAACCCCGAGCACGCTC
TGCATAATCTTACTTTCGTTCATGCCTTGCTAGGGAACTTCTACGTTGGA
CGCGGACCATATCAAGCTCCATCTGCGTCTGGTGGTGGAAGATGAGACGA
TGCACCaggaagaggtcgaggtACGGCGTGGACgcgcgtgggaaggaagg
tgctTGCTTTCGCGCCTCACGAACCTACGAAATGACGCCGCCGCCCAATC
ACATGCCTTCTCATAGGTCTTGCtagagggcggggacggacATGGGGCGC
TGACACATGCCTGGCGACTTGTAGGTGAGGATAAAGTGGccatcgccctc
tccttccctgagGCATCGCCACCTGCGTCGTCCTGGGGATGGCTCTCGGT
GCTCACGGGCGTCATAAATGGCGAGCGTGTCCTGCTAACTGGCAGGGAGT
GGTCCCCAGGGATGGTTTGGATGCTGGGAGGCGGCTTTGTGTGCGTCGCG
GTTGGATTGACGTTGGTGGTCACGAGCGCCGTTGGCAAGAAGTCAGGCAG
GGGGGCCTCCCGAAAGGGGGATTGAAAGAATTCAAGTTGGCCCGGAATAT
AAAGATAATCAAGACCTAGAAATTGTAAGAAGAATAAATTGATCCCGGAG
GGCGCTactcgccgcctcctgcaagtgtctcctctccctttgtgGGGCTA
TCATTTCTCTTTCATACCTGCTGGGCATTATTGTATGCCTCATCATTACA
TTATTGACGGCTGCCTGAGGGAAAGACGCGTGTGCTTGAAATGTCACTGT
TGCTTGGGTGGGCGCTTGAGCAATCGTGAATGGAAGCGCTTTGGAATTGC
GTCAGGTTACCAGGATACATAAAGATATCAGAAGGAGTGTAGCATAGACG
TCATGACATTTGAAAAGTGGCAGCGAATCCGTAGCTAGGCAGCGTGGAAA
TGGAGCTGAAAGGTCAGCCTTCCAATATCTGCAAATCATCGGCAGAgctt
ctttctttgtttTGTGTGCGTTTACAACTATCAGGACACTGTACTTTTCA
TCC back to topCoding sequence (CDS) from alignment at CM002463.1:407787..409989+ >rna4372 ID=rna4372|Name=rna4372|organism=Nannochloropsis gaditana|type=CDS|length=6069bp|location=Sequence derived from alignment at CM002463.1:407787..409989+ (Nannochloropsis gaditana)
ATGGGAACATGCCCTAGCGCGTCAGTCTTTGTTTTGTTGCTCGTGCTTCT
TGTAAGCATCAGCCTCACTTCAGTAATGGCTGCGGCTGAGCCCACTCTCT
CTCGGAAGGAACATTTGGATGCTAAGAGGGCTTTTGACCGGGTAAAGCAA
CACCCTGTGACGGACGGAGATGGGCCCCTCATTGAATACAAGGCAGCAGA
CGGGACCATGAAAACCATGACACAGGCCGACCTCCAGCAGCGtctgcagc
agcaagacgCCGTGCTCCCCCAGCTGAACGAGGACGGCAGCACACTGACC
AAatcagaggaaggaaaagccaCGCTTGAGGAGCTGAAGACCAAGGACCC
CTACTTGTCGCGCATGGTCGAGGCCTCCCAGTTTGCATTGCACAGACTGC
AAGCGGACGGGGCGCTGGACAAAGAAATGCGGCTGAAGTCACTCCATact
gtggaggaggagggacctgAGGGAACTTCTACGTTGGACGCGGACCATAT
CAAGCTCCATCTGCGTCTGGTGGTGGAAGATGAGACGATGCACCaggaag
aggtcgagGTCTTGCtagagggcggggacggacATGGGGCGCTGACACAT
GCCTGGCGACTTGTAGGTGAGGATAAAGTGGccatcgccctctccttccc
tgagGCATCGCCACCTGCGTCGTCCTGGGGATGGCTCTCGGTGCTCACGG
GCGTCATAAATGGCGAGCGTGTCCTGCTAACTGGCAGGGAGTGGTCCCCA
GGGATGGTTTGGATGCTGGGAGGCGGCTTTGTGTGCGTCGCGGTTGGATT
GACGTTGGTGGTCACGAGCGCCGTTGGCAAGAAGTCAGGCAGGGGGGCCT
CCCGAAAGGGGGATTGAATGGGAACATGCCCTAGCGCGTCAGTCTTTGTT
TTGTTGCTCGTGCTTCTTGTAAGCATCAGCCTCACTTCAGTAATGGCTGC
GGCTGAGCCCACTCTCTCTCGGAAGGAACATTTGGATGCTAAGAGGGCTT
TTGACCGGGTAAAGCAACACCCTGTGACGGACGGAGATGGGCCCCTCATT
GAATACAAGGCAGCAGACGGGACCATGAAAACCATGACACAGGCCGACCT
CCAGCAGCGtctgcagcagcaagacgCCGTGCTCCCCCAGCTGAACGAGG
ACGGCAGCACACTGACCAAatcagaggaaggaaaagccaCGCTTGAGGAG
CTGAAGACCAAGGACCCCTACTTGTCGCGCATGGTCGAGGCCTCCCAGTT
TGCATTGCACAGACTGCAAGCGGACGGGGCGCTGGACAAAGAAATGCGGC
TGAAGTCACTCCATactgtggaggaggagggacctgAGGGAACTTCTACG
TTGGACGCGGACCATATCAAGCTCCATCTGCGTCTGGTGGTGGAAGATGA
GACGATGCACCaggaagaggtcgagGTCTTGCtagagggcggggacggac
ATGGGGCGCTGACACATGCCTGGCGACTTGTAGGTGAGGATAAAGTGGcc
atcgccctctccttccctgagGCATCGCCACCTGCGTCGTCCTGGGGATG
GCTCTCGGTGCTCACGGGCGTCATAAATGGCGAGCGTGTCCTGCTAACTG
GCAGGGAGTGGTCCCCAGGGATGGTTTGGATGCTGGGAGGCGGCTTTGTG
TGCGTCGCGGTTGGATTGACGTTGGTGGTCACGAGCGCCGTTGGCAAGAA
GTCAGGCAGGGGGGCCTCCCGAAAGGGGGATTGAATGGGAACATGCCCTA
GCGCGTCAGTCTTTGTTTTGTTGCTCGTGCTTCTTGTAAGCATCAGCCTC
ACTTCAGTAATGGCTGCGGCTGAGCCCACTCTCTCTCGGAAGGAACATTT
GGATGCTAAGAGGGCTTTTGACCGGGTAAAGCAACACCCTGTGACGGACG
GAGATGGGCCCCTCATTGAATACAAGGCAGCAGACGGGACCATGAAAACC
ATGACACAGGCCGACCTCCAGCAGCGtctgcagcagcaagacgCCGTGCT
CCCCCAGCTGAACGAGGACGGCAGCACACTGACCAAatcagaggaaggaa
aagccaCGCTTGAGGAGCTGAAGACCAAGGACCCCTACTTGTCGCGCATG
GTCGAGGCCTCCCAGTTTGCATTGCACAGACTGCAAGCGGACGGGGCGCT
GGACAAAGAAATGCGGCTGAAGTCACTCCATactgtggaggaggagggac
ctgAGGGAACTTCTACGTTGGACGCGGACCATATCAAGCTCCATCTGCGT
CTGGTGGTGGAAGATGAGACGATGCACCaggaagaggtcgagGTCTTGCt
agagggcggggacggacATGGGGCGCTGACACATGCCTGGCGACTTGTAG
GTGAGGATAAAGTGGccatcgccctctccttccctgagGCATCGCCACCT
GCGTCGTCCTGGGGATGGCTCTCGGTGCTCACGGGCGTCATAAATGGCGA
GCGTGTCCTGCTAACTGGCAGGGAGTGGTCCCCAGGGATGGTTTGGATGC
TGGGAGGCGGCTTTGTGTGCGTCGCGGTTGGATTGACGTTGGTGGTCACG
AGCGCCGTTGGCAAGAAGTCAGGCAGGGGGGCCTCCCGAAAGGGGGATTG
AATGGGAACATGCCCTAGCGCGTCAGTCTTTGTTTTGTTGCTCGTGCTTC
TTGTAAGCATCAGCCTCACTTCAGTAATGGCTGCGGCTGAGCCCACTCTC
TCTCGGAAGGAACATTTGGATGCTAAGAGGGCTTTTGACCGGGTAAAGCA
ACACCCTGTGACGGACGGAGATGGGCCCCTCATTGAATACAAGGCAGCAG
ACGGGACCATGAAAACCATGACACAGGCCGACCTCCAGCAGCGtctgcag
cagcaagacgCCGTGCTCCCCCAGCTGAACGAGGACGGCAGCACACTGAC
CAAatcagaggaaggaaaagccaCGCTTGAGGAGCTGAAGACCAAGGACC
CCTACTTGTCGCGCATGGTCGAGGCCTCCCAGTTTGCATTGCACAGACTG
CAAGCGGACGGGGCGCTGGACAAAGAAATGCGGCTGAAGTCACTCCATac
tgtggaggaggagggacctgAGGGAACTTCTACGTTGGACGCGGACCATA
TCAAGCTCCATCTGCGTCTGGTGGTGGAAGATGAGACGATGCACCaggaa
gaggtcgagGTCTTGCtagagggcggggacggacATGGGGCGCTGACACA
TGCCTGGCGACTTGTAGGTGAGGATAAAGTGGccatcgccctctccttcc
ctgagGCATCGCCACCTGCGTCGTCCTGGGGATGGCTCTCGGTGCTCACG
GGCGTCATAAATGGCGAGCGTGTCCTGCTAACTGGCAGGGAGTGGTCCCC
AGGGATGGTTTGGATGCTGGGAGGCGGCTTTGTGTGCGTCGCGGTTGGAT
TGACGTTGGTGGTCACGAGCGCCGTTGGCAAGAAGTCAGGCAGGGGGGCC
TCCCGAAAGGGGGATTGAATGGGAACATGCCCTAGCGCGTCAGTCTTTGT
TTTGTTGCTCGTGCTTCTTGTAAGCATCAGCCTCACTTCAGTAATGGCTG
CGGCTGAGCCCACTCTCTCTCGGAAGGAACATTTGGATGCTAAGAGGGCT
TTTGACCGGGTAAAGCAACACCCTGTGACGGACGGAGATGGGCCCCTCAT
TGAATACAAGGCAGCAGACGGGACCATGAAAACCATGACACAGGCCGACC
TCCAGCAGCGtctgcagcagcaagacgCCGTGCTCCCCCAGCTGAACGAG
GACGGCAGCACACTGACCAAatcagaggaaggaaaagccaCGCTTGAGGA
GCTGAAGACCAAGGACCCCTACTTGTCGCGCATGGTCGAGGCCTCCCAGT
TTGCATTGCACAGACTGCAAGCGGACGGGGCGCTGGACAAAGAAATGCGG
CTGAAGTCACTCCATactgtggaggaggagggacctgAGGGAACTTCTAC
GTTGGACGCGGACCATATCAAGCTCCATCTGCGTCTGGTGGTGGAAGATG
AGACGATGCACCaggaagaggtcgagGTCTTGCtagagggcggggacgga
cATGGGGCGCTGACACATGCCTGGCGACTTGTAGGTGAGGATAAAGTGGc
catcgccctctccttccctgagGCATCGCCACCTGCGTCGTCCTGGGGAT
GGCTCTCGGTGCTCACGGGCGTCATAAATGGCGAGCGTGTCCTGCTAACT
GGCAGGGAGTGGTCCCCAGGGATGGTTTGGATGCTGGGAGGCGGCTTTGT
GTGCGTCGCGGTTGGATTGACGTTGGTGGTCACGAGCGCCGTTGGCAAGA
AGTCAGGCAGGGGGGCCTCCCGAAAGGGGGATTGAATGGGAACATGCCCT
AGCGCGTCAGTCTTTGTTTTGTTGCTCGTGCTTCTTGTAAGCATCAGCCT
CACTTCAGTAATGGCTGCGGCTGAGCCCACTCTCTCTCGGAAGGAACATT
TGGATGCTAAGAGGGCTTTTGACCGGGTAAAGCAACACCCTGTGACGGAC
GGAGATGGGCCCCTCATTGAATACAAGGCAGCAGACGGGACCATGAAAAC
CATGACACAGGCCGACCTCCAGCAGCGtctgcagcagcaagacgCCGTGC
TCCCCCAGCTGAACGAGGACGGCAGCACACTGACCAAatcagaggaagga
aaagccaCGCTTGAGGAGCTGAAGACCAAGGACCCCTACTTGTCGCGCAT
GGTCGAGGCCTCCCAGTTTGCATTGCACAGACTGCAAGCGGACGGGGCGC
TGGACAAAGAAATGCGGCTGAAGTCACTCCATactgtggaggaggaggga
cctgAGGGAACTTCTACGTTGGACGCGGACCATATCAAGCTCCATCTGCG
TCTGGTGGTGGAAGATGAGACGATGCACCaggaagaggtcgagGTCTTGC
tagagggcggggacggacATGGGGCGCTGACACATGCCTGGCGACTTGTA
GGTGAGGATAAAGTGGccatcgccctctccttccctgagGCATCGCCACC
TGCGTCGTCCTGGGGATGGCTCTCGGTGCTCACGGGCGTCATAAATGGCG
AGCGTGTCCTGCTAACTGGCAGGGAGTGGTCCCCAGGGATGGTTTGGATG
CTGGGAGGCGGCTTTGTGTGCGTCGCGGTTGGATTGACGTTGGTGGTCAC
GAGCGCCGTTGGCAAGAAGTCAGGCAGGGGGGCCTCCCGAAAGGGGGATT
GAATGGGAACATGCCCTAGCGCGTCAGTCTTTGTTTTGTTGCTCGTGCTT
CTTGTAAGCATCAGCCTCACTTCAGTAATGGCTGCGGCTGAGCCCACTCT
CTCTCGGAAGGAACATTTGGATGCTAAGAGGGCTTTTGACCGGGTAAAGC
AACACCCTGTGACGGACGGAGATGGGCCCCTCATTGAATACAAGGCAGCA
GACGGGACCATGAAAACCATGACACAGGCCGACCTCCAGCAGCGtctgca
gcagcaagacgCCGTGCTCCCCCAGCTGAACGAGGACGGCAGCACACTGA
CCAAatcagaggaaggaaaagccaCGCTTGAGGAGCTGAAGACCAAGGAC
CCCTACTTGTCGCGCATGGTCGAGGCCTCCCAGTTTGCATTGCACAGACT
GCAAGCGGACGGGGCGCTGGACAAAGAAATGCGGCTGAAGTCACTCCATa
ctgtggaggaggagggacctgAGGGAACTTCTACGTTGGACGCGGACCAT
ATCAAGCTCCATCTGCGTCTGGTGGTGGAAGATGAGACGATGCACCagga
agaggtcgagGTCTTGCtagagggcggggacggacATGGGGCGCTGACAC
ATGCCTGGCGACTTGTAGGTGAGGATAAAGTGGccatcgccctctccttc
cctgagGCATCGCCACCTGCGTCGTCCTGGGGATGGCTCTCGGTGCTCAC
GGGCGTCATAAATGGCGAGCGTGTCCTGCTAACTGGCAGGGAGTGGTCCC
CAGGGATGGTTTGGATGCTGGGAGGCGGCTTTGTGTGCGTCGCGGTTGGA
TTGACGTTGGTGGTCACGAGCGCCGTTGGCAAGAAGTCAGGCAGGGGGGC
CTCCCGAAAGGGGGATTGA back to top
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