EWM26308.1, cds4362 (CDS) Nannochloropsis gaditana

Overview
NameEWM26308.1
Unique Namecds4362
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:408015..408087 +
Alignment locationCM002463.1:408170..408321 +
Alignment locationCM002463.1:408464..408571 +
Alignment locationCM002463.1:408697..408758 +
Alignment locationCM002463.1:408865..408940 +
Alignment locationCM002463.1:409020..409106 +
Alignment locationCM002463.1:409203..409511 +

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Properties
Property NameValue
Protein idEWM26308.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100093g17.5105.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:408015..408087 +
CM002463.1supercontigCM002463.1:408170..408321 +
CM002463.1supercontigCM002463.1:408464..408571 +
CM002463.1supercontigCM002463.1:408697..408758 +
CM002463.1supercontigCM002463.1:408865..408940 +
CM002463.1supercontigCM002463.1:409020..409106 +
CM002463.1supercontigCM002463.1:409203..409511 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM26308.1 vs. NCBI_GenBank
Match: gi|585108314|gb|EWM26308.1| (hypothetical protein Naga_100093g17 [Nannochloropsis gaditana])

HSP 1 Score: 580.482 bits (1495), Expect = 0.000e+0
Identity = 288/288 (100.00%), Postives = 288/288 (100.00%), Query Frame = 0 
Query:    1 MGTCPSASVFVLLLVLLVSISLTSVMAAAEPTLSRKEHLDAKRAFDRVKQHPVTDGDGPLIEYKAADGTMKTMTQADLQQRLQQQDAVLPQLNEDGSTLTKSEEGKATLEELKTKDPYLSRMVEASQFALHRLQADGALDKEMRLKSLHTVEEEGPEGTSTLDADHIKLHLRLVVEDETMHQEEVEVLLEGGDGHGALTHAWRLVGEDKVAIALSFPEASPPASSWGWLSVLTGVINGERVLLTGREWSPGMVWMLGGGFVCVAVGLTLVVTSAVGKKSGRGASRKGD 288
            MGTCPSASVFVLLLVLLVSISLTSVMAAAEPTLSRKEHLDAKRAFDRVKQHPVTDGDGPLIEYKAADGTMKTMTQADLQQRLQQQDAVLPQLNEDGSTLTKSEEGKATLEELKTKDPYLSRMVEASQFALHRLQADGALDKEMRLKSLHTVEEEGPEGTSTLDADHIKLHLRLVVEDETMHQEEVEVLLEGGDGHGALTHAWRLVGEDKVAIALSFPEASPPASSWGWLSVLTGVINGERVLLTGREWSPGMVWMLGGGFVCVAVGLTLVVTSAVGKKSGRGASRKGD
Sbjct:    1 MGTCPSASVFVLLLVLLVSISLTSVMAAAEPTLSRKEHLDAKRAFDRVKQHPVTDGDGPLIEYKAADGTMKTMTQADLQQRLQQQDAVLPQLNEDGSTLTKSEEGKATLEELKTKDPYLSRMVEASQFALHRLQADGALDKEMRLKSLHTVEEEGPEGTSTLDADHIKLHLRLVVEDETMHQEEVEVLLEGGDGHGALTHAWRLVGEDKVAIALSFPEASPPASSWGWLSVLTGVINGERVLLTGREWSPGMVWMLGGGFVCVAVGLTLVVTSAVGKKSGRGASRKGD 288
[Close]
BLAST of EWM26308.1 vs. NCBI_GenBank
Match: gi|553182560|ref|XP_005853749.1| (hypothetical protein NGA_0132502 [Nannochloropsis gaditana CCMP526] >gi|422295310|gb|EKU22609.1| hypothetical protein NGA_0132502 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 575.089 bits (1481), Expect = 0.000e+0
Identity = 288/292 (98.63%), Postives = 288/292 (98.63%), Query Frame = 0 
Query:    1 MGTCPSASVFVLLLVLLVSISLTSVMAAAEPTLSRKEHLDAKRAFDRVKQHPVTDGDGPLIEYKAADGTMKTMTQADLQQRLQQQDAVLPQLNEDGSTLTKSEEGKATLEE----LKTKDPYLSRMVEASQFALHRLQADGALDKEMRLKSLHTVEEEGPEGTSTLDADHIKLHLRLVVEDETMHQEEVEVLLEGGDGHGALTHAWRLVGEDKVAIALSFPEASPPASSWGWLSVLTGVINGERVLLTGREWSPGMVWMLGGGFVCVAVGLTLVVTSAVGKKSGRGASRKGD 288
            MGTCPSASVFVLLLVLLVSISLTSVMAAAEPTLSRKEHLDAKRAFDRVKQHPVTDGDGPLIEYKAADGTMKTMTQADLQQRLQQQDAVLPQLNEDGSTLTKSEEGKATLEE    LKTKDPYLSRMVEASQFALHRLQADGALDKEMRLKSLHTVEEEGPEGTSTLDADHIKLHLRLVVEDETMHQEEVEVLLEGGDGHGALTHAWRLVGEDKVAIALSFPEASPPASSWGWLSVLTGVINGERVLLTGREWSPGMVWMLGGGFVCVAVGLTLVVTSAVGKKSGRGASRKGD
Sbjct:    1 MGTCPSASVFVLLLVLLVSISLTSVMAAAEPTLSRKEHLDAKRAFDRVKQHPVTDGDGPLIEYKAADGTMKTMTQADLQQRLQQQDAVLPQLNEDGSTLTKSEEGKATLEEVRGTLKTKDPYLSRMVEASQFALHRLQADGALDKEMRLKSLHTVEEEGPEGTSTLDADHIKLHLRLVVEDETMHQEEVEVLLEGGDGHGALTHAWRLVGEDKVAIALSFPEASPPASSWGWLSVLTGVINGERVLLTGREWSPGMVWMLGGGFVCVAVGLTLVVTSAVGKKSGRGASRKGD 292
The following BLAST results are available for this feature:
BLAST of EWM26308.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585108314|gb|EWM26308.1|0.000e+0100.00hypothetical protein Naga_100093g17 [Nannochlorops... [more]
gi|553182560|ref|XP_005853749.1|0.000e+098.63hypothetical protein NGA_0132502 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4372rna4372Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications