rna437, rna437 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna437
Unique Name	rna437
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1074
Alignment location	CM002455.1:1081085..1082916 -

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Properties


Property Name	Value
Product	Nuclear protein DGCR14
Orig transcript id	gnl\|cribi\|Naga_100003g45.1828.mrna
Orig protein id	gnl\|cribi\|Naga_100003g45.1828
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:1081085..1082916 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100003g45	gene421	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna437	rna437-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30311.1	cds437	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:1081085..1082916-
coding sequence from alignment at CM002455.1:1081085..1082916-

mRNA sequence

>rna437 ID=rna437|Name=rna437|organism=Nannochloropsis gaditana|type=mRNA|length=1074bp
GTACTCACACCACAGTAAAAACGATGAAACCCACCAGTTTGCTCGTCCCG
AGCTCGCTCCTGCTTTTGAGCAGCAATCTCTTCGTGTCCTCTTTCGTCAT
TCAATTGCACACTTCATCGATAATAGGTGTAAGCGCTAAGTCCTCTTCCA
CCGGTAGTAGCAGCAGGAGCAGTACAAGGATGCTTGAGAAGATATACATT
GTAACGGGCTCCACTGATGGGATAGGCCAGCATACAGCCAGTAATTTAAT
CAATACCCCAGATGCCAAACTCTTGGTACACGGCCGCAATCCTGCCAAGG
TTGCTCAGACCGTACAACAGTTGAAATCAGTAAACCCCGGGGATATAGAT
GGCGTCGTGGCCGATCTGGCTTCATTTCAGGACATTCGACGACTGGCCAA
AGATTTGGAGGAGAAAATAGAAGCCGCATCTCCCGATGCCCCCGTGGTGC
TGATTAACAATGCGGGTGTGTTCGAGACCAGGCGTAAAGAAAGCCCGGAA
GGATTGGAAATGACCTTCGCCATCAACGTTGCTGCTCCATTTCTATTGAC
TGGCCTTCTTCTTCCTTTACTTCGGAGGAGAAAGAACAGTCGGATAATCA
ACATCTCCTCCATTTCCCAAGGGGGGAGCATACCATGGGACGACCTACAG
CTCGCACTTCCCGGGGCCTATACCGACCATCGAGCCTACTCGCTCAGCAA
ACTATGCATGGCTATGCTCAGTATGGAGCAGAGCAGCCGTTTCGGTTCCG
CTGAGTTTCCAATTGTGTGCTGCGACCCCGGTACGGTAAACACGAAGATG
CTGGAAGCGGGGTGGGGGATGTACGGGGTGGACGTGTCGGCTGCCAATGA
CGAGACCCTCCTGGCCCTCGCCCCATCCCTCGACAACGGGTCTTATTTTG
TCGGCAGGATGGCACGGAAAGCGAACGCAGAGGCTTACGACCCAAAGTCA
CGGGCACGGTTGTGGCAATACCTGGAGGAGGTGACGGGATTCGCGTACTG
AGACATGTCATGTCGACGCAAGCGCGAAGAGGGAAGGAATGGAACAACGA
ATTTTTGTGACAGGGCGGGAATTG

protein sequence of rna437

>rna437-protein ID=rna437-protein|Name=rna437|organism=Nannochloropsis gaditana|type=polypeptide|length=510bp
MEAVVARGAQGNDPLARDKNEKGRAAAKGGAQAIAKAYKRGLPTPSPLRR
MEDPCADHIMPSRSEKKSKTQNSLMLPPAVPPSRRRRKSPQVLDEDSFVD
AMGEIIERDFFPELPKLHRQMKWLQALESRQLRSLAEVQRLVLSGGSLEQ
IVSRADTGAGLGDSGHGLGSETPLSTAASSDAPTLPPLPLTLDQFLARFH
SEDDAAFDDLAERMREAHRRKYWWVYAHPQLETGKEKLYLLPNGEMMTEE
EQRRHVEAANAKPRLGDDRPNAPETWPIRAKNALMFGPGSLEENARVHER
GRDGATQPALLLEDDEANGTRPLLLAGNGGNARVGLAAKAPKRLVHSNTR
FHAGSLSWKGRDPSRALPLERPRSDASSSSAATSASAAQREVTEGFVPMT
PLLVPGAEGDVPIMTWGEVESTPLRVAEPFDYGSPVVPVESRGDALGSRQ
GFHIQPTGSRERVANALESQRGQTGGTGSRGTASGSWSTPSLEEGSSRTG
SKVTENLLNI

mRNA from alignment at CM002455.1:1081085..1082916-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna437 ID=rna437|Name=rna437|organism=Nannochloropsis gaditana|type=mRNA|length=1832bp|location=Sequence derived from alignment at CM002455.1:1081085..1082916- (Nannochloropsis gaditana)
ATGGAGGCTGTTGTGGCAAGAGGAGCGCAAGGAAATGATCCGCTGGCGCG
GGACAAGAATGAGAAGGGACGGGCCGCCGCCAAGGGAGGAGCTCAAGCAA
TCGCAAAGGCGTACAAGCGCGGTCTGCCAACACCAAGTCCTCTGCGGCGA
ATGGAGGATCCGTGTGCGGACCACATTATGCCCTCCCGGAGCGAGAAGAA
GAGCAAAACTCAGAATTCTCTCATGCTACCGCCAGCAGTTCCCCCGTCCC
GCAGGCGGCGCAAGAGTCCTCAGGTGCTAGACGAGGACTCCTTTGTGGAT
GCCATGGGGGAGATCATAGAACGAGATTTCTTCCCCGAACTACCCAAGCT
ACACCGGCAGATGAAGTGGCTGCAAGCCCTTGAAAGCCGTCAGTTGCGAA
GTCTGGCAGAGGTGCAGCGTCTGGTGCTGTCTGGCGGCTCTCTGGAACAG
ATTGTCTCCAGAGCAGATACCGGCGCCGGGCTGGGTGACAGTGGCCATGG
GTTGGGATCTGAGACCCCTCTATCGACAGCTGCGTCATCAGACGCCCCAA
CCTTACCGCCATTGCCTTTGACTCTGGACCAGTTTTTGGCCCGTTTCCAC
AGCGAGGACGACGCGGCCTTTGACGACCTGGCGGAACGCATGCGGGAGGC
GCACCGTCGGAAGTACTGGTGGGTGTACGCCCACCCACAGCTGGAAACAG
GAAAGGAGAAACTGTACCTGCTGCCCAACGGGGAGATGATGACCGAGGAA
GAACAGAGACGGCACGTAGAGGCGGCCAACGCCAAGCCCCGGCTCGGGGA
TGACCGGCCGAATGCCCCTGAGACTTGGCCTATACGGGCGAAGAACGCCT
TGATGTTCGGACCGGGGTCCCTGGAAGAGAACGCGCGGGTCCACGAGCGA
GGACGCGACGGAGCCACGCAGCCGGCCTTGCTGCTGGAGGACGACGAGGC
GAATGGAACGAGGCCCCTGCTCCTGGCGGGGAACGGGGGCAACGCGCGCG
TGGGCCTGGCAGCCAAGGCACCGAAACGACTAGTGCACAGTAACACACGC
TTTCATGCGGGCAGCTTGTCATGGAAAGGGAGGGATCCGTCGCGAGCCTT
GCCCTTGGAGCGCCCGCGCTCTGACGCGAGCAGCTCCTCGGCCGCCACGT
CGGCGTCTGCGGCGCAGCGGGAGGTGACGGAGGGTTTTGTGCCCATGACC
CCGCTCCTCGTCCCAGGGGCAGAGGGTGACGTGCCTATCATGACCTGGGG
GGAGGTGGAGAGCACGCCCTTGCGGGTGGCAGAGCCCTTTGATTACGGGA
GCCCCGTGGTCCCGGTGGAAAGCCGGGGCGATGCCTTGGGGTCGAGGCAA
GGCTTTCACATCCAACCCACCGGGTCGCGGGAGAGGGTAGCGAACGCCCT
GGAGTCCCAAGTGCGGAATCGGGCCAAGGCGGGGAAGAAGGAAGGCGGGA
AGGCGACGGGTGGCGTGACCAAGAGGAGCGGCAAGCGAGGCTTCCACTCC
CTGACGCCCGCAGCACAGAGCCTGGCGGCCAAACTGGCCGGTGCTGGCAA
GGGGGAGGCATTGGGGGGGGGAGCCTCGGTCCAGCTGCGGGCGTCGTACT
CGGCGAAAGGAGGAACGGGTTTAGCGGGGGGGGGGGGCGGACCCCCCGCC
TTGGCCAGCTCGGCAGCCATAGCGGCGTCACGCCCTCCCCCTTGCGGCCG
ATGTCAAAGCGGGGGCAGACGGGGGGGACTGGTTCTAGAGGTACCGCCTC
CGGGTCCTGGTCCACTCCGTCCTTGGAGGAGGGCAGCAGCCGGACCGGGA
GCAAGGTGACGGAGAACCTGCTGAACATATGA

Coding sequence (CDS) from alignment at CM002455.1:1081085..1082916-

>rna437 ID=rna437|Name=rna437|organism=Nannochloropsis gaditana|type=CDS|length=3066bp|location=Sequence derived from alignment at CM002455.1:1081085..1082916- (Nannochloropsis gaditana)
CGGGGGCAGACGGGGGGGACTGGTTCTAGAGGTACCGCCTCCGGGTCCTG
GTCCACTCCGTCCTTGGAGGAGGGCAGCAGCCGGACCGGGAGCAAGGTGA
CGGAGAACCTGCTGAACATATGAATGGAGGCTGTTGTGGCAAGAGGAGCG
CAAGGAAATGATCCGCTGGCGCGGGACAAGAATGAGAAGGGACGGGCCGC
CGCCAAGGGAGGAGCTCAAGCAATCGCAAAGGCGTACAAGCGCGGTCTGC
CAACACCAAGTCCTCTGCGGCGAATGGAGGATCCGTGTGCGGACCACATT
ATGCCCTCCCGGAGCGAGAAGAAGAGCAAAACTCAGAATTCTCTCATGCT
ACCGCCAGCAGTTCCCCCGTCCCGCAGGCGGCGCAAGAGTCCTCAGGTGC
TAGACGAGGACTCCTTTGTGGATGCCATGGGGGAGATCATAGAACGAGAT
TTCTTCCCCGAACTACCCAAGCTACACCGGCAGATGAAGTGGCTGCAAGC
CCTTGAAAGCCGTCAGTTGCGAAGTCTGGCAGAGGTGCAGCGTCTGGTGC
TGTCTGGCGGCTCTCTGGAACAGATTGTCTCCAGAGCAGATACCGGCGCC
GGGCTGGGTGACAGTGGCCATGGGTTGGGATCTGAGACCCCTCTATCGAC
AGCTGCGTCATCAGACGCCCCAACCTTACCGCCATTGCCTTTGACTCTGG
ACCAGTTTTTGGCCCGTTTCCACAGCGAGGACGACGCGGCCTTTGACGAC
CTGGCGGAACGCATGCGGGAGGCGCACCGTCGGAAGTACTGGTGGGTGTA
CGCCCACCCACAGCTGGAAACAGGAAAGGAGAAACTGTACCTGCTGCCCA
ACGGGGAGATGATGACCGAGGAAGAACAGAGACGGCACGTAGAGGCGGCC
AACGCCAAGCCCCGGCTCGGGGATGACCGGCCGAATGCCCCTGAGACTTG
GCCTATACGGGCGAAGAACGCCTTGATGTTCGGACCGGGGTCCCTGGAAG
AGAACGCGCGGGTCCACGAGCGAGGACGCGACGGAGCCACGCAGCCGGCC
TTGCTGCTGGAGGACGACGAGGCGAATGGAACGAGGCCCCTGCTCCTGGC
GGGGAACGGGGGCAACGCGCGCGTGGGCCTGGCAGCCAAGGCACCGAAAC
GACTAGTGCACAGTAACACACGCTTTCATGCGGGCAGCTTGTCATGGAAA
GGGAGGGATCCGTCGCGAGCCTTGCCCTTGGAGCGCCCGCGCTCTGACGC
GAGCAGCTCCTCGGCCGCCACGTCGGCGTCTGCGGCGCAGCGGGAGGTGA
CGGAGGGTTTTGTGCCCATGACCCCGCTCCTCGTCCCAGGGGCAGAGGGT
GACGTGCCTATCATGACCTGGGGGGAGGTGGAGAGCACGCCCTTGCGGGT
GGCAGAGCCCTTTGATTACGGGAGCCCCGTGGTCCCGGTGGAAAGCCGGG
GCGATGCCTTGGGGTCGAGGCAAGGCTTTCACATCCAACCCACCGGGTCG
CGGGAGAGGGTAGCGAACGCCCTGGAGTCCCAACGGGGGCAGACGGGGGG
GACTGGTTCTAGAGGTACCGCCTCCGGGTCCTGGTCCACTCCGTCCTTGG
AGGAGGGCAGCAGCCGGACCGGGAGCAAGGTGACGGAGAACCTGCTGAAC
ATATGAATGGAGGCTGTTGTGGCAAGAGGAGCGCAAGGAAATGATCCGCT
GGCGCGGGACAAGAATGAGAAGGGACGGGCCGCCGCCAAGGGAGGAGCTC
AAGCAATCGCAAAGGCGTACAAGCGCGGTCTGCCAACACCAAGTCCTCTG
CGGCGAATGGAGGATCCGTGTGCGGACCACATTATGCCCTCCCGGAGCGA
GAAGAAGAGCAAAACTCAGAATTCTCTCATGCTACCGCCAGCAGTTCCCC
CGTCCCGCAGGCGGCGCAAGAGTCCTCAGGTGCTAGACGAGGACTCCTTT
GTGGATGCCATGGGGGAGATCATAGAACGAGATTTCTTCCCCGAACTACC
CAAGCTACACCGGCAGATGAAGTGGCTGCAAGCCCTTGAAAGCCGTCAGT
TGCGAAGTCTGGCAGAGGTGCAGCGTCTGGTGCTGTCTGGCGGCTCTCTG
GAACAGATTGTCTCCAGAGCAGATACCGGCGCCGGGCTGGGTGACAGTGG
CCATGGGTTGGGATCTGAGACCCCTCTATCGACAGCTGCGTCATCAGACG
CCCCAACCTTACCGCCATTGCCTTTGACTCTGGACCAGTTTTTGGCCCGT
TTCCACAGCGAGGACGACGCGGCCTTTGACGACCTGGCGGAACGCATGCG
GGAGGCGCACCGTCGGAAGTACTGGTGGGTGTACGCCCACCCACAGCTGG
AAACAGGAAAGGAGAAACTGTACCTGCTGCCCAACGGGGAGATGATGACC
GAGGAAGAACAGAGACGGCACGTAGAGGCGGCCAACGCCAAGCCCCGGCT
CGGGGATGACCGGCCGAATGCCCCTGAGACTTGGCCTATACGGGCGAAGA
ACGCCTTGATGTTCGGACCGGGGTCCCTGGAAGAGAACGCGCGGGTCCAC
GAGCGAGGACGCGACGGAGCCACGCAGCCGGCCTTGCTGCTGGAGGACGA
CGAGGCGAATGGAACGAGGCCCCTGCTCCTGGCGGGGAACGGGGGCAACG
CGCGCGTGGGCCTGGCAGCCAAGGCACCGAAACGACTAGTGCACAGTAAC
ACACGCTTTCATGCGGGCAGCTTGTCATGGAAAGGGAGGGATCCGTCGCG
AGCCTTGCCCTTGGAGCGCCCGCGCTCTGACGCGAGCAGCTCCTCGGCCG
CCACGTCGGCGTCTGCGGCGCAGCGGGAGGTGACGGAGGGTTTTGTGCCC
ATGACCCCGCTCCTCGTCCCAGGGGCAGAGGGTGACGTGCCTATCATGAC
CTGGGGGGAGGTGGAGAGCACGCCCTTGCGGGTGGCAGAGCCCTTTGATT
ACGGGAGCCCCGTGGTCCCGGTGGAAAGCCGGGGCGATGCCTTGGGGTCG
AGGCAAGGCTTTCACATCCAACCCACCGGGTCGCGGGAGAGGGTAGCGAA
CGCCCTGGAGTCCCAA

Synonyms

Publications