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Properties
| Property Name | Value |
|---|
| Product | mitochondrial ribosomal protein l46 |
| Orig transcript id | gnl|cribi|Naga_100093g20.5100.mrna |
| Orig protein id | gnl|cribi|Naga_100093g20.5100 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002463.1 | supercontig | CM002463.1:404347..405634 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4369 ID=rna4369|Name=rna4369|organism=Nannochloropsis gaditana|type=mRNA|length=2804bp
ACCCACACCAAGCCTGGACTCGTACAAAACCATACCGACACGATTTGTGC
CCTATGACTTCTCATCTCTCACTCTCGTTCACTTTAAATTTCTCGCACAG
CCGACCGCAGTCGCTATGGACGCGCATTTGGCAAATCAAGGCTCACATCG
AGGATAGGAAATCACACCATCATGTCGGCAGCACCTCCCCAGAGTCTTGC
TCAGCCTCAGCTGATAAAACAGAGCGAAGTGGTCCGACTGCTGGGCCTTC
TCAATGTACGTTGCATGTCGAGGAATATTCCATGTGTGATCATGCCTTTT
GTCATCGCACTTTTTTGACGGTGGAATTCAAACTTCACCTCTTCCTTTGT
CCTTCTCTTTCTTCTCTGTTCCGCCCAATCTGATGTGCGCGCACATTTGC
TAGCATTGGATGCATGGATCCAGACAATCTAGGGATTCTTTTAAAGAGAG
CCATGACTCATCAGCTCCCGACCTTCCTTTTTCCCCCTTGGGCCCCATTC
CAGGACGAGACAGCCTCCGTTGAGAAGAGTATACAGGCCTTTGAGGGCGA
CTTCCCGGCCCCGGACCGCTTTCGAATCGGTTGCGGCCTGTGCATATTTT
TACAAGACCAGCTTCTGAGCCGGTCGCAGCGCCTACTTGCCTTTGCCTTA
CTTGCCCGCATGCACCGAAACCACCCGAAAGGCAGCGTGGGCAACCCCTT
CCTCCCCTTTTTCCTGGCCGCGTTTGAGCAAGGTCCTGGGAGTGGAGGCG
CGGCGGGGGACGATACTGCGGCCTTGGACATGGCCGAGAAAATATTCGTG
GCGGAGCTGTTGCTCAATCCATCGGGCGCAAACGTTGTATTTGAGGACAC
TCCTCACCTCTTGCTGGCTCGGCTCCGGCAACGACAAGCGAAAGAAAATG
TGGAGGTGCTCCAGAAACGTCTGGTCCCGGCGTTGATGGCCTTGAAGTCT
TCGTACATCGATACCCCCGAGGCCAAGGAAGCCATGCAAGGGTTGCGGGG
CCTTGGGGTGTGGCCGCACGTTCGAGACCCGGTGGGCGGTCGGGAGGGGG
GCGTCGGGGTGCCGGGAGGGATGGAGGAGTTCAAAGGCGGGGCGGGGGCG
TCGGAGCCCGCACAGCATGTGCAGCGGTACGCGATGCCTGGGGTCTCCCT
TTACGACCTGGGTCTGGAGGGAGAGGAGGACATGGCTGCCCTGTCGCTGC
ACAGCTTTGAGCCCGCTTTCGTGCGGCCCCCGCCCCCGGTCTTGGGCGTG
GCAGAGACGGAATGGATCTGGTTGAACCCGGACTACGCCTCCAAATTGAT
GTGGGACGCGGCCATGGGGGAGGATGACGGAAAAGGCGCGGAGGTGAGGG
AGGTGATGGCGAAAGCCTTCCGGGGGCCGTTGGTTCCACAACAGCAGCAA
CAGGTCTTACGGGAGCTGGAAGGAGACGCGCGCCTGATCCATTACTGTGG
TTTGACGCCGCAGAAACTACCAGAGCTGGTGGAGAACAATCCGATGATCG
CGATCGAGTGCCTACTCAAGCTCATGTCCTCGGTCCACAAGAACGAGTAC
CTGTCCGCCCTCGTGAACATGGAGATGTCGCTTCATTCGATGGAAGTGGT
CAACCGGCTTACCACCGTGGTGCCTTTGCCCACGGAATTCATCCACTTGT
ACATCAGCAACTGCATCTCCTCCTGCGAGAACATCAAGGACAAGTACATG
CAAAACCGACTCGTCCGGCTCGTCTGCGTGTTCCTGCAGTCCCTCATCCG
AAACAAGATCATACACGTCCAAGACCTCTACATCGAAGTCCAGGCCTTTT
GCATCGAGTTCTCCAGGATCAGGGAGGCAGCGGGGCTCTTCCGGCTGCTC
AAGACATTGGAATAAAAGGGGGAGGGTAATGTTTGGAAAATGCCACACCA
AGGAAAAGAAAAAGACGACCCGGAAGATAGCCTCCGACGGTTCTGGCAGC
ACCTTTGCTTAATCTCGCGAGCGGTGCATCCAGTGCTGCCCCTTTATGCT
TTGAGTCAGACCTGACTGCGGGTTCGTCTACGTGCTACCTACCTCCCCCC
CCTCTTCTACAATATGTTCGTCAGCAACTCGGCATATTCCTTCTCTTCCA
CCGACGCCTGGGGCAAGTACTCGCCCATCTCCTCCCTCGTTACCCACACG
AATTCCTCCACTCCCTCTCCCACGACTTTGCCCCGCCCTTTCAGGTGCTG
TGCCCTGTAAAAGAAGACCTTGTCGCCACGGCCATGGGCAAGTCCCACCT
TCCCCGCGTCACGGGTCCTCGGATCAGGAGGAACAGACGTTCTGCCAAGG
CACGATTTAGCGTCGTCCGGTCGTTGAGACGGTCCGCCTTCGTCACCCTG
GGGGCGAGCTTGAAAGGGAGCTCGGGCAGGACTTCGTCGTCGGATCGATC
GAGCTCAGCGGCTTGGCCCATCAGATTCAGCTCCGGGGGAAAGACCTGCC
CAAGGAGTGGAGCAGGAAGAGAATGCGTGGACATCATGCCAAGTCGGCCG
GCAAAGGGGCCGTAGTGCGTGCACGAGGGTCAGAAAATGCTTCGCTCCAA
TGTCTCTTTCCCTACCTTGCCATGCTTTGCGATCTCCTCTTGCATTTCCA
TGTACGCAGCCTCCCAGTCCTCGGGTTCTTTCATGATGATGGGATGACGT
TCCACAATACTGCGGCATATGAAAGGTAGAAGAGGAGAATAAAGTCGAGG
AACCATGAATTTCAAGCCACCCCCCATGCCAAAAGAGACACGCCCGAAGG
GTAAAGAAGTCCACGCACCTTGCAGCCACGATGCGCCACGGCAAATTGGC
TTCT back to topprotein sequence of rna4369 >rna4369-protein ID=rna4369-protein|Name=rna4369|organism=Nannochloropsis gaditana|type=polypeptide|length=352bp
MLLCWLRQGLGDQRALFLGVRAVATLTTGTSAVPAPPARTTKRTLPECVA
SKRSFRTSAIRTSEADTAPSSPTPPSSSDKGKKGGLKPKKKKGKRPSSTA
AYLQSRAAQLSRHEAAAKEANLPWRIVAASIVERHPIIMKEPEDWEAAYM
EMQEEIAKHGKVFPPELNLMGQAAELDRSDDEVLPELPFKLAPRVTKADR
LNDRTTLNRALAERLFLLIRGPVTRGRWDLPMAVLEGGGKGGDMKGLSMR
KTHEATVRRFLGDKFEAYVPSNAPVGMHWRVPSEPSTGKTGGEQTYGDKV
FFYRAQHLKGRGKVVGEGVEEFVWVTREEMGEYLPQASVEEKEYAELLTN
IL back to topmRNA from alignment at CM002463.1:404347..405634- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4369 ID=rna4369|Name=rna4369|organism=Nannochloropsis gaditana|type=mRNA|length=1288bp|location=Sequence derived from alignment at CM002463.1:404347..405634- (Nannochloropsis gaditana)
ATGCTTCTATGTTGGCTGAGACAGGGACTAGGGGACCAGAGGGCATTATT
TCTGGGTGTGAGAGCGGTTGCCACCCTCACCACAGGAACATCAGCCGTTC
CAGCACCACCAGCAAGAACTACAAAAAGGACACTACCAGAATGTGTGGCA
TCAAAAAGAAGCTTTAGAACATCCGCAATAAGGACATCTGAAGCCGATAC
AGCCCCATCCTCCCCAACTCCACCTTCATCGTCTGACAAAGGAAAAAAAG
GAGGCCTCAAACCCAAAAAAAAGAAAGGGAAACGGCCTTCATCAACGGCA
GCATACTTGCAGTCGCGCGCGGCGCAGTTGTCAAGGCACGAAGCTGCTGC
TAAAGAAGCCAATTTGCCGTGGCGCATCGTGGCTGCAAGGTGCGTGGACT
TCTTTACCCTTCGGGCGTGTCTCTTTTGGCATGGGGGGTGGCTTGAAATT
CATGGTTCCTCGACTTTATTCTCCTCTTCTACCTTTCATATGCCGCAGTA
TTGTGGAACGTCATCCCATCATCATGAAAGAACCCGAGGACTGGGAGGCT
GCGTACATGGAAATGCAAGAGGAGATCGCAAAGCATGGCAAGGTAGGGAA
AGAGACATTGGAGCGAAGCATTTTCTGACCCTCGTGCACGCACTACGGCC
CCTTTGCCGGCCGACTTGGCATGATGTCCACGCATTCTCTTCCTGCTCCA
CTCCTTGGGCAGGTCTTTCCCCCGGAGCTGAATCTGATGGGCCAAGCCGC
TGAGCTCGATCGATCCGACGACGAAGTCCTGCCCGAGCTCCCTTTCAAGC
TCGCCCCCAGGGTGACGAAGGCGGACCGTCTCAACGACCGGACGACGCTA
AATCGTGCCTTGGCAGAACGTCTGTTCCTCCTGATCCGAGGACCCGTGAC
GCGGGGAAGGTGGGACTTGCCCATGGCCGTCTTGGAGGGCGGGGGAAAGG
GCGGGGACATGAAGGGGCTATCCATGAGAAAGACGCACGAGGCAACGGTC
AGAAGATTTTTGGGGGATAAATTCGAGGCTTATGTGCCGTCCAACGCCCC
CGTGGGCATGCACTGGCGGGTTCCTTCCGAGCCGAGCACTGGGAAGACAG
GAGGGGAGCAGACTTACGGCGACAAGGTCTTCTTTTACAGGGCACAGCAC
CTGAAAGGGCGGGGCAAAGTCGTGGGAGAGGGAGTGGAGGAATTCGTGTG
GGTAACGAGGGAGGAGATGGGCGAGTACTTGCCCCAGGCGTCGGTGGAAG
AGAAGGAATATGCCGAGTTGCTGACGAACATATTGTAG back to topCoding sequence (CDS) from alignment at CM002463.1:404347..405634- >rna4369 ID=rna4369|Name=rna4369|organism=Nannochloropsis gaditana|type=CDS|length=3177bp|location=Sequence derived from alignment at CM002463.1:404347..405634- (Nannochloropsis gaditana)
GTCTTTCCCCCGGAGCTGAATCTGATGGGCCAAGCCGCTGAGCTCGATCG
ATCCGACGACGAAGTCCTGCCCGAGCTCCCTTTCAAGCTCGCCCCCAGGG
TGACGAAGGCGGACCGTCTCAACGACCGGACGACGCTAAATCGTGCCTTG
GCAGAACGTCTGTTCCTCCTGATCCGAGGACCCGTGACGCGGGGAAGGTG
GGACTTGCCCATGGCCGTCTTGGAGGGCGGGGGAAAGGGCGGGGACATGA
AGGGGCTATCCATGAGAAAGACGCACGAGGCAACGGTCAGAAGATTTTTG
GGGGATAAATTCGAGGCTTATGTGCCGTCCAACGCCCCCGTGGGCATGCA
CTGGCGGGTTCCTTCCGAGCCGAGCACTGGGAAGACAGGAGGGGAGCAGA
CTTACGGCGACAAGGTCTTCTTTTACAGGGCACAGCACCTGAAAGGGCGG
GGCAAAGTCGTGGGAGAGGGAGTGGAGGAATTCGTGTGGGTAACGAGGGA
GGAGATGGGCGAGTACTTGCCCCAGGCGTCGGTGGAAGAGAAGGAATATG
CCGAGTTGCTGACGAACATATTGTAGTATTGTGGAACGTCATCCCATCAT
CATGAAAGAACCCGAGGACTGGGAGGCTGCGTACATGGAAATGCAAGAGG
AGATCGCAAAGCATGGCAAGATGCTTCTATGTTGGCTGAGACAGGGACTA
GGGGACCAGAGGGCATTATTTCTGGGTGTGAGAGCGGTTGCCACCCTCAC
CACAGGAACATCAGCCGTTCCAGCACCACCAGCAAGAACTACAAAAAGGA
CACTACCAGAATGTGTGGCATCAAAAAGAAGCTTTAGAACATCCGCAATA
AGGACATCTGAAGCCGATACAGCCCCATCCTCCCCAACTCCACCTTCATC
GTCTGACAAAGGAAAAAAAGGAGGCCTCAAACCCAAAAAAAAGAAAGGGA
AACGGCCTTCATCAACGGCAGCATACTTGCAGTCGCGCGCGGCGCAGTTG
TCAAGGCACGAAGCTGCTGCTAAAGAAGCCAATTTGCCGTGGCGCATCGT
GGCTGCAAGGTCTTTCCCCCGGAGCTGAATCTGATGGGCCAAGCCGCTGA
GCTCGATCGATCCGACGACGAAGTCCTGCCCGAGCTCCCTTTCAAGCTCG
CCCCCAGGGTGACGAAGGCGGACCGTCTCAACGACCGGACGACGCTAAAT
CGTGCCTTGGCAGAACGTCTGTTCCTCCTGATCCGAGGACCCGTGACGCG
GGGAAGGTGGGACTTGCCCATGGCCGTCTTGGAGGGCGGGGGAAAGGGCG
GGGACATGAAGGGGCTATCCATGAGAAAGACGCACGAGGCAACGGTCAGA
AGATTTTTGGGGGATAAATTCGAGGCTTATGTGCCGTCCAACGCCCCCGT
GGGCATGCACTGGCGGGTTCCTTCCGAGCCGAGCACTGGGAAGACAGGAG
GGGAGCAGACTTACGGCGACAAGGTCTTCTTTTACAGGGCACAGCACCTG
AAAGGGCGGGGCAAAGTCGTGGGAGAGGGAGTGGAGGAATTCGTGTGGGT
AACGAGGGAGGAGATGGGCGAGTACTTGCCCCAGGCGTCGGTGGAAGAGA
AGGAATATGCCGAGTTGCTGACGAACATATTGTAGTATTGTGGAACGTCA
TCCCATCATCATGAAAGAACCCGAGGACTGGGAGGCTGCGTACATGGAAA
TGCAAGAGGAGATCGCAAAGCATGGCAAGATGCTTCTATGTTGGCTGAGA
CAGGGACTAGGGGACCAGAGGGCATTATTTCTGGGTGTGAGAGCGGTTGC
CACCCTCACCACAGGAACATCAGCCGTTCCAGCACCACCAGCAAGAACTA
CAAAAAGGACACTACCAGAATGTGTGGCATCAAAAAGAAGCTTTAGAACA
TCCGCAATAAGGACATCTGAAGCCGATACAGCCCCATCCTCCCCAACTCC
ACCTTCATCGTCTGACAAAGGAAAAAAAGGAGGCCTCAAACCCAAAAAAA
AGAAAGGGAAACGGCCTTCATCAACGGCAGCATACTTGCAGTCGCGCGCG
GCGCAGTTGTCAAGGCACGAAGCTGCTGCTAAAGAAGCCAATTTGCCGTG
GCGCATCGTGGCTGCAAGGTCTTTCCCCCGGAGCTGAATCTGATGGGCCA
AGCCGCTGAGCTCGATCGATCCGACGACGAAGTCCTGCCCGAGCTCCCTT
TCAAGCTCGCCCCCAGGGTGACGAAGGCGGACCGTCTCAACGACCGGACG
ACGCTAAATCGTGCCTTGGCAGAACGTCTGTTCCTCCTGATCCGAGGACC
CGTGACGCGGGGAAGGTGGGACTTGCCCATGGCCGTCTTGGAGGGCGGGG
GAAAGGGCGGGGACATGAAGGGGCTATCCATGAGAAAGACGCACGAGGCA
ACGGTCAGAAGATTTTTGGGGGATAAATTCGAGGCTTATGTGCCGTCCAA
CGCCCCCGTGGGCATGCACTGGCGGGTTCCTTCCGAGCCGAGCACTGGGA
AGACAGGAGGGGAGCAGACTTACGGCGACAAGGTCTTCTTTTACAGGGCA
CAGCACCTGAAAGGGCGGGGCAAAGTCGTGGGAGAGGGAGTGGAGGAATT
CGTGTGGGTAACGAGGGAGGAGATGGGCGAGTACTTGCCCCAGGCGTCGG
TGGAAGAGAAGGAATATGCCGAGTTGCTGACGAACATATTGTAGTATTGT
GGAACGTCATCCCATCATCATGAAAGAACCCGAGGACTGGGAGGCTGCGT
ACATGGAAATGCAAGAGGAGATCGCAAAGCATGGCAAGATGCTTCTATGT
TGGCTGAGACAGGGACTAGGGGACCAGAGGGCATTATTTCTGGGTGTGAG
AGCGGTTGCCACCCTCACCACAGGAACATCAGCCGTTCCAGCACCACCAG
CAAGAACTACAAAAAGGACACTACCAGAATGTGTGGCATCAAAAAGAAGC
TTTAGAACATCCGCAATAAGGACATCTGAAGCCGATACAGCCCCATCCTC
CCCAACTCCACCTTCATCGTCTGACAAAGGAAAAAAAGGAGGCCTCAAAC
CCAAAAAAAAGAAAGGGAAACGGCCTTCATCAACGGCAGCATACTTGCAG
TCGCGCGCGGCGCAGTTGTCAAGGCACGAAGCTGCTGCTAAAGAAGCCAA
TTTGCCGTGGCGCATCGTGGCTGCAAG back to top
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