EWM26303.1, cds4359 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26303.1 vs. NCBI_GenBank
Match: gi|585108309|gb|EWM26303.1| (mitochondrial ribosomal protein l46 [Nannochloropsis gaditana]) HSP 1 Score: 718.383 bits (1853), Expect = 0.000e+0 Identity = 352/352 (100.00%), Postives = 352/352 (100.00%), Query Frame = 0 Query: 1 MLLCWLRQGLGDQRALFLGVRAVATLTTGTSAVPAPPARTTKRTLPECVASKRSFRTSAIRTSEADTAPSSPTPPSSSDKGKKGGLKPKKKKGKRPSSTAAYLQSRAAQLSRHEAAAKEANLPWRIVAASIVERHPIIMKEPEDWEAAYMEMQEEIAKHGKVFPPELNLMGQAAELDRSDDEVLPELPFKLAPRVTKADRLNDRTTLNRALAERLFLLIRGPVTRGRWDLPMAVLEGGGKGGDMKGLSMRKTHEATVRRFLGDKFEAYVPSNAPVGMHWRVPSEPSTGKTGGEQTYGDKVFFYRAQHLKGRGKVVGEGVEEFVWVTREEMGEYLPQASVEEKEYAELLTNIL 352 MLLCWLRQGLGDQRALFLGVRAVATLTTGTSAVPAPPARTTKRTLPECVASKRSFRTSAIRTSEADTAPSSPTPPSSSDKGKKGGLKPKKKKGKRPSSTAAYLQSRAAQLSRHEAAAKEANLPWRIVAASIVERHPIIMKEPEDWEAAYMEMQEEIAKHGKVFPPELNLMGQAAELDRSDDEVLPELPFKLAPRVTKADRLNDRTTLNRALAERLFLLIRGPVTRGRWDLPMAVLEGGGKGGDMKGLSMRKTHEATVRRFLGDKFEAYVPSNAPVGMHWRVPSEPSTGKTGGEQTYGDKVFFYRAQHLKGRGKVVGEGVEEFVWVTREEMGEYLPQASVEEKEYAELLTNIL Sbjct: 1 MLLCWLRQGLGDQRALFLGVRAVATLTTGTSAVPAPPARTTKRTLPECVASKRSFRTSAIRTSEADTAPSSPTPPSSSDKGKKGGLKPKKKKGKRPSSTAAYLQSRAAQLSRHEAAAKEANLPWRIVAASIVERHPIIMKEPEDWEAAYMEMQEEIAKHGKVFPPELNLMGQAAELDRSDDEVLPELPFKLAPRVTKADRLNDRTTLNRALAERLFLLIRGPVTRGRWDLPMAVLEGGGKGGDMKGLSMRKTHEATVRRFLGDKFEAYVPSNAPVGMHWRVPSEPSTGKTGGEQTYGDKVFFYRAQHLKGRGKVVGEGVEEFVWVTREEMGEYLPQASVEEKEYAELLTNIL 352
BLAST of EWM26303.1 vs. NCBI_GenBank
Match: gi|553182572|ref|XP_005853752.1| (hypothetical protein NGA_0453300 [Nannochloropsis gaditana CCMP526] >gi|422295313|gb|EKU22612.1| hypothetical protein NGA_0453300 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 714.916 bits (1844), Expect = 0.000e+0 Identity = 351/352 (99.72%), Postives = 351/352 (99.72%), Query Frame = 0 Query: 1 MLLCWLRQGLGDQRALFLGVRAVATLTTGTSAVPAPPARTTKRTLPECVASKRSFRTSAIRTSEADTAPSSPTPPSSSDKGKKGGLKPKKKKGKRPSSTAAYLQSRAAQLSRHEAAAKEANLPWRIVAASIVERHPIIMKEPEDWEAAYMEMQEEIAKHGKVFPPELNLMGQAAELDRSDDEVLPELPFKLAPRVTKADRLNDRTTLNRALAERLFLLIRGPVTRGRWDLPMAVLEGGGKGGDMKGLSMRKTHEATVRRFLGDKFEAYVPSNAPVGMHWRVPSEPSTGKTGGEQTYGDKVFFYRAQHLKGRGKVVGEGVEEFVWVTREEMGEYLPQASVEEKEYAELLTNIL 352 MLLCWLRQGLGDQRALFLGVRAVATLTTGTSAVPAPPARTTKRTLPECVASKRSFRTSAIRTSEADTAPSSPTPPSSS KGKKGGLKPKKKKGKRPSSTAAYLQSRAAQLSRHEAAAKEANLPWRIVAASIVERHPIIMKEPEDWEAAYMEMQEEIAKHGKVFPPELNLMGQAAELDRSDDEVLPELPFKLAPRVTKADRLNDRTTLNRALAERLFLLIRGPVTRGRWDLPMAVLEGGGKGGDMKGLSMRKTHEATVRRFLGDKFEAYVPSNAPVGMHWRVPSEPSTGKTGGEQTYGDKVFFYRAQHLKGRGKVVGEGVEEFVWVTREEMGEYLPQASVEEKEYAELLTNIL Sbjct: 1 MLLCWLRQGLGDQRALFLGVRAVATLTTGTSAVPAPPARTTKRTLPECVASKRSFRTSAIRTSEADTAPSSPTPPSSSGKGKKGGLKPKKKKGKRPSSTAAYLQSRAAQLSRHEAAAKEANLPWRIVAASIVERHPIIMKEPEDWEAAYMEMQEEIAKHGKVFPPELNLMGQAAELDRSDDEVLPELPFKLAPRVTKADRLNDRTTLNRALAERLFLLIRGPVTRGRWDLPMAVLEGGGKGGDMKGLSMRKTHEATVRRFLGDKFEAYVPSNAPVGMHWRVPSEPSTGKTGGEQTYGDKVFFYRAQHLKGRGKVVGEGVEEFVWVTREEMGEYLPQASVEEKEYAELLTNIL 352
BLAST of EWM26303.1 vs. NCBI_GenBank
Match: gi|298715507|emb|CBJ28077.1| (mitochondrial ribosomal protein L46 isoform 2 [Ectocarpus siliculosus]) HSP 1 Score: 131.724 bits (330), Expect = 4.788e-32 Identity = 92/276 (33.33%), Postives = 134/276 (48.55%), Query Frame = 0 Query: 76 SSSDKGKKGGLKPKKKKGKRP-------SSTAAYLQSRAAQLSRHEAAAKEANLPWRIVAASIVERHPIIMKEPEDWEAAYMEMQEEIAKHGKVFPPELNLMGQAAELDRSDDEVLPELPFKLAPRVTKADRLNDRTTLNRALAERLFLLIRGPVTRGRWDLPMAVLEGGGKGGDMKGLSMRKTHEATVRRFL----------GDKFEAYVPSNAPVGMHWRVPSEPSTGKTGGEQTYGDKVFFYRAQHLKGRGKVVGEGVEEFVWVTREEMGEYL 334 SSS+ KK ++ K +RP YL R + A L W I +A I+ER P+I++E DW+ + ++Q + A +G FP E+ E + ++VL + P LAPR T AD NDRTTL+RAL ERL L+++ P + W LP + E G ++R+T E T ++ L D + + N P G WR E G+ + +GDKVF R Q + G+ VV E +WVT+ E+GEYL Sbjct: 34 SSSNLTKKQQIEGFTIKDRRPPRPRVAKQKRKQYLAERKDAFEAEQEKATSLGLDWGIRSALILERLPVIVEEYTDWQRDFWDLQTKQAHYGAKFPAEMGFKYDD-EKSLTMEQVLEQSPVPLAPRRTPADESNDRTTLDRALDERLVLIVK-PRSGDEWRLPESAWEPGE--------TIRQTAERTAQQLLLKSATRKGQRDDVAQLHFVGNCPAGWFWRTADEEQGGQ---HEKFGDKVFINRVQLICGQPTVVKRQAAEHLWVTKHEIGEYL 296
BLAST of EWM26303.1 vs. NCBI_GenBank
Match: gi|224005451|ref|XP_002291686.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220972205|gb|EED90537.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 114.775 bits (286), Expect = 2.334e-25 Identity = 69/228 (30.26%), Postives = 116/228 (50.88%), Query Frame = 0 Query: 117 AKEANLPWRIVAASIVERHPIIMKEPEDWEAAYMEMQEEIAKHGKVFPPELNLMGQAA----ELDRSDDEVLPELPFKLAPRVTKADRLNDRTTLNRALAERLFLLIRGPVTRG-----RWDLPMAVLEGGGKGGDMKGLSMRKTHEATVRRFLGDKFEAYVPSNAPVGMHWRVPSEPSTGKTGGEQTYGDKVFFYRAQHLKG---RGKVVGEGVEEFVWVTREEMGE 332 AK+ N PWR+ A +VER P++ + WE YME+++ + GK +P E M ++ + + +E+L LPF APR T+AD + TL+R L ER+FL ++ R RW LP ++ D ++ + +G+ + + PSN P+ +++RV + S E YG+K+F++R Q G + G +E+ W+TR+E+ E Sbjct: 128 AKKQNQPWRVRVAVMVERLPVVTPDHPVWEMDYMELKDYLMTFGKEYPEETGFMMRSGREEDHVVETREEMLAGLPFTPAPRETEADHTGNIRTLDRQLKERVFLTLKTASERTASGIPRWTLPSTLVSNEETLLDAAKRAVADS--------VGEDLKLWCPSNTPMAVNYRVYNSKSLSSDFCENYYGEKIFYFRVQWDSGDVSESALEKNGEKEYGWLTRKEIVE 347
BLAST of EWM26303.1 vs. NCBI_GenBank
Match: gi|397572804|gb|EJK48412.1| (hypothetical protein THAOC_32790 [Thalassiosira oceanica]) HSP 1 Score: 112.849 bits (281), Expect = 1.201e-24 Identity = 69/222 (31.08%), Postives = 120/222 (54.05%), Query Frame = 0 Query: 117 AKEANLPWRIVAASIVERHPIIMKEPEDWEAAYMEMQEEIAKHGKVFPPELNLMGQ----AAELDRSDDEVLPELPFKLAPRVTKADRLNDRTTLNRALAERLFLLIR----GPVTRGRWDLPMAVLEGGGKGGDMKGLSMRKTHEATVRRFLGDKFEAYVPSNAPVGMHWRVPSEPSTGKTGGEQTYGDKVFFYRAQHLKGRGKVVGEGVEEFVWVTREEM 330 AK+ PWRI A +VER ++M + ED+E +M+++ + +GK +P E M + + SD+++L LPF APR T+AD + TL+R L ++FL ++ G RW LP A+ + + ++ +T E V +G+ + ++PSNAP+ +++RV ++ G +G+K+FFYR Q+ G +++ W+TREE+ Sbjct: 132 AKQEGKPWRIRVAVMVERPNVVMPDYEDYELEWMDLKNYLMSYGKQYPDETKFMFEPDKPEDHIIESDEDMLAGLPFVPAPRETEADASGNVKTLDRQLKTKVFLAVKSGAEGNRNGPRWTLPSAIPQ--------EDETLLQTAERAVSEAVGEDLQLWLPSNAPMTINYRVYNKNMAEDFRG-NYFGEKIFFYRLQYDSGDVDEEAMTADDYGWLTREEV 344
BLAST of EWM26303.1 vs. NCBI_GenBank
Match: gi|470461045|ref|XP_004341522.1| (hydrolase, NUDIX domain containing protein [Acanthamoeba castellanii str. Neff] >gi|440798368|gb|ELR19436.1| hydrolase, NUDIX domain containing protein [Acanthamoeba castellanii str. Neff]) HSP 1 Score: 102.834 bits (255), Expect = 2.463e-21 Identity = 85/283 (30.04%), Postives = 123/283 (43.46%), Query Frame = 0 Query: 101 AYLQSRAAQLSRHEAAAKEANLPWRIVAASIVERHPIIMKEPEDWEAAY------------------MEMQEEIAKHGKVF----------------------------PPELNLMGQAAELDRSDDEVLPELPFK---LAPRVTKADRLNDRTTLNRALAERLFLLIRGPVTRGRWDLPMAVLEGGGKGGDMKGLSMRKTHEATVRRFLGDKFEAYVPSNAPVGMHWRVPSEPSTGKTGGEQTYGDKVFFYRAQHLKGRGKVVGEGVEEFVWVTREEMGEYL 334 AYLQ R Q+ AA K WR+V V+R P+I+ P+ E Y +E+ EE + G E + + Q AE +E L ++ K L+PR+T AD NDR +LNRALA RL+L+++ P T W P +GG G +MR+ E +R +G K + + SNAP G + P + G +G KVFFY A+++ G + V +F WVTR+E+ EY Sbjct: 43 AYLQ-RLRQMEAEAAAGK----TWRLVGGIAVQRLPLIIPTPDPIEDQYEQFRFDRDNYFSINVERNLELMEEDRRKGSKISKTQKKKKEKKEGVSDAGPAGGKQKGGEQDEADSLYQKAEETAYREETLEDVRAKMERLSPRITAADLANDRKSLNRALASRLYLIVQKPRTEHAWQFP--------QGGRESGETMRQCCERELREEIGTKVKVHFWSNAPAGC-YSYPYPDNYSHNDGH--HGSKVFFYHAEYVSGEPHPDNKEVVDFAWVTRDELQEYF 309
BLAST of EWM26303.1 vs. NCBI_GenBank
Match: gi|325182496|emb|CCA16951.1| (conserved hypothetical protein [Albugo laibachii Nc14]) HSP 1 Score: 100.523 bits (249), Expect = 1.723e-20 Identity = 77/246 (31.30%), Postives = 118/246 (47.97%), Query Frame = 0 Query: 124 WRIVAASIVERHPIIMKEPEDWEAAYMEMQEEIAKHGKVFPP-----------ELNLMGQAAELDRSDDEVLPELPFKLAPRVTKADRLNDRTTLNRALAERLFLLIRGPVTRGR----WDLPMAVLEGGGKGGDMKGLSMRKTHEATVRRFLGDKFEAYVPSNAPVGMHWRVPSEPSTGKTGGEQTYGDKVFFYRAQHLKGRGKVV--GEGVEEFVWVTREEMGEYLPQASVEEKEYAELLTNIL 352 WRI+AA I+ R+PII +PEDW+ + +++ E + + P EL+ + + D E++ F LAPR+T+ D++ ++ +L+RALA + LL R P R W P G +G++MRK ++R G + E Y NAP+G + E K + G KVF Y+++ + G V +FVWVTREE+ EYL E E A + IL Sbjct: 100 WRIMAACILHRYPIIQPDPEDWQVDFDKVRYEKSLREDLRIPKGFWTVEPGTEELSPEEAPSPFEPDDPELIVGDGFHLAPRITEDDKIKNQKSLDRALASHVVLLTRQPQHLRRSPYDWFFPF--------GEFKEGVTMRKMAIRQLKRTCGKELEVYPIGNAPIGYVSFLHKE----KQSEDAFDGTKVFLYKSR-VMGEASVTLNASRASDFVWVTREELNEYL------EPELASYIYKIL 326
BLAST of EWM26303.1 vs. NCBI_GenBank
Match: gi|168000063|ref|XP_001752736.1| (predicted protein [Physcomitrella patens] >gi|162696267|gb|EDQ82607.1| predicted protein [Physcomitrella patens]) HSP 1 Score: 98.5969 bits (244), Expect = 2.995e-20 Identity = 73/226 (32.30%), Postives = 117/226 (51.77%), Query Frame = 0 Query: 125 RIVAASIVERHPIIMKE---PED-WEAAYMEMQEEIAKHGKVFPPELNLMGQAAELDRSDDEVLPELPFKLAPRVTKADRLNDRTTLNRALAERLFLLIRGPVTRG-----RWDLPMAVLEGGGKGGDMKGLSMRKTHEATVRRFLGDKFEAYVPSNAPVG-MHWRVPSEPSTGKTGGEQTYGDKVFFYRAQHLKGRGKVVGEGVEEFVWVTREEMGEYLPQASVE 340 +I+AA +VER P+++ + P D +E+ + +++ + +P E + E D E F+ AP VT+ADR NDR +LNRAL+ RL+LLIRG G W P V S+R E V+ F+ + + Y+ NAP G + +R+ SEPS K FF+++Q + G+ V G+ +++F WV++EE+ EYL + +E Sbjct: 56 KIIAAMVVERLPVVLPKSAPPVDTFESFSFDWRQQFRRE---YPQEFLDASSSREADEG------EADFEPAPTVTEADRTNDRRSLNRALSRRLYLLIRGIPYGGVKDSFVWHFPEKVYANED--------SLRMCAEEAVKPFVSNPTDLYLVGNAPCGHLTYRL-SEPSY-----------KRFFFKSQLIAGKVHVKGKKIKDFAWVSKEELPEYLDPSDLE 252
BLAST of EWM26303.1 vs. NCBI_GenBank
Match: gi|1210526082|dbj|GAX15000.1| (hypothetical protein FisN_12Lh304 [Fistulifera solaris]) HSP 1 Score: 99.3673 bits (246), Expect = 4.615e-20 Identity = 76/267 (28.46%), Postives = 129/267 (48.31%), Query Frame = 0 Query: 90 KKKGKRPSSTAAYLQSRAAQLSRHEAAAKEANLPWRIVAASIVERHPIIMKEPEDWEAAYMEMQEEIAKHGK-----VFPPELNLMGQAAELDRSDD--EVLPELP-FKLAPRVTKADRLNDRTTLNRALAERLFLLIRGPVTRGRWDLPMAVLEGGGKGGDMKGLSMRKTHEATVRRFLGDKFEAYVPSNAPVGMHWRVPSEPSTGKTGGEQTYGDKVFFYRAQHLKGRGKVVGEGVEEFVWVTREEMGEYLPQASVEEKEYAELL 348 K +G++ + ++ + E A++A L W+I A IVER +++ + E+WE + ++Q ++ + GK +FP Q L R+DD E L ++ F APR+T+AD+ D T R L ++L ++ T W P L+ D + R EA +G++ E + PSN PV + + + P T + EQ YG K FF + Q +G+ K + V +F W+ R E+ E + + + + Y LL Sbjct: 64 KPRGEKRNEFRSWFIQKKVNDEYMERKARQAGLGWKIHVAVIVERLNVVLPDQEEWEMEFEDLQNQLQQFGKDYPKGLFPSAAEHSAQETHLTRNDDILEYLEKVKGFTPAPRITEADKSGDVRTTGRKLKTSIYLTVQEDST---WKFPTVALKDDEMLLDA---AKRAIPEA-----VGEELEFWCPSNCPVAVE--MMAFP-TEQQQKEQQYGSKTFFIKVQFDEGKVKTGTQKVTDFAWLDRSEIVERVEKQNGDGAFYKYLL 316
BLAST of EWM26303.1 vs. NCBI_GenBank
Match: gi|308813091|ref|XP_003083852.1| (Mitochondrial ribosomal protein L17 (ISS) [Ostreococcus tauri] >gi|116055734|emb|CAL57819.1| Ribosomal protein L46 [Ostreococcus tauri] >gi|1199290253|gb|OUS45353.1| mitochondrial ribosomal protein L17 [Ostreococcus tauri]) HSP 1 Score: 97.4413 bits (241), Expect = 5.255e-20 Identity = 66/213 (30.99%), Postives = 103/213 (48.36%), Query Frame = 0 Query: 126 IVAASIVERHPIIMKEPEDWEAAYMEMQEEIAKHGKVFPPELNLMGQAAELDRSDDEVLPELP-FKLAPRVTKADRLNDRTTLNRALAERLFLLIRGPVTRGRWDLPMAVLEGGGKGGDMKGLSMRKTHEATVRRFLGDKFEAYVPSNAPVGMHWRVPSEPSTGKTGGEQTYGDKVFFYRAQHLKGRGKVVGEGVEEFVWVTREEMGEYLPQA 337 + + +VER P+++ EP WE Y+E + KV P+ + + ++ LP F APR T+ADR DR+T+ R L E LFL+++ G W P K G +MR+T E +++ F GD E +V NAP G + + G F+YR +++G ++ G+ VE WVT+EE+GEY + Sbjct: 59 LYGSMLVERIPVVIPEPPAWEREYLEWAQARRDKFKVKLPDEMVEAKG---------LIDNLPDFDAAPRETEADRTGDRSTMYRKLPEFLFLVLKD--KSGTWGFP--------KAPHTDGETMRQTAERSLKDFAGDSLECWVVGNAPQGHY---------------EEQGVTTFYYRGSYVEGELELQGDYVEH-AWVTKEELGEYFDDS 236 The following BLAST results are available for this feature:
BLAST of EWM26303.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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