EWM26303.1, cds4359 (CDS) Nannochloropsis gaditana

Overview
NameEWM26303.1
Unique Namecds4359
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:405246..405634 -
Alignment locationCM002463.1:405043..405136 -
Alignment locationCM002463.1:404347..404922 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26303.1
Productmitochondrial ribosomal protein l46
Orig transcript idgnl|cribi|Naga_100093g20.5100.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:405246..405634 -
CM002463.1supercontigCM002463.1:405043..405136 -
CM002463.1supercontigCM002463.1:404347..404922 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
Homology
BLAST of EWM26303.1 vs. NCBI_GenBank
Match: gi|585108309|gb|EWM26303.1| (mitochondrial ribosomal protein l46 [Nannochloropsis gaditana])

HSP 1 Score: 718.383 bits (1853), Expect = 0.000e+0
Identity = 352/352 (100.00%), Postives = 352/352 (100.00%), Query Frame = 0
Query:    1 MLLCWLRQGLGDQRALFLGVRAVATLTTGTSAVPAPPARTTKRTLPECVASKRSFRTSAIRTSEADTAPSSPTPPSSSDKGKKGGLKPKKKKGKRPSSTAAYLQSRAAQLSRHEAAAKEANLPWRIVAASIVERHPIIMKEPEDWEAAYMEMQEEIAKHGKVFPPELNLMGQAAELDRSDDEVLPELPFKLAPRVTKADRLNDRTTLNRALAERLFLLIRGPVTRGRWDLPMAVLEGGGKGGDMKGLSMRKTHEATVRRFLGDKFEAYVPSNAPVGMHWRVPSEPSTGKTGGEQTYGDKVFFYRAQHLKGRGKVVGEGVEEFVWVTREEMGEYLPQASVEEKEYAELLTNIL 352
            MLLCWLRQGLGDQRALFLGVRAVATLTTGTSAVPAPPARTTKRTLPECVASKRSFRTSAIRTSEADTAPSSPTPPSSSDKGKKGGLKPKKKKGKRPSSTAAYLQSRAAQLSRHEAAAKEANLPWRIVAASIVERHPIIMKEPEDWEAAYMEMQEEIAKHGKVFPPELNLMGQAAELDRSDDEVLPELPFKLAPRVTKADRLNDRTTLNRALAERLFLLIRGPVTRGRWDLPMAVLEGGGKGGDMKGLSMRKTHEATVRRFLGDKFEAYVPSNAPVGMHWRVPSEPSTGKTGGEQTYGDKVFFYRAQHLKGRGKVVGEGVEEFVWVTREEMGEYLPQASVEEKEYAELLTNIL
Sbjct:    1 MLLCWLRQGLGDQRALFLGVRAVATLTTGTSAVPAPPARTTKRTLPECVASKRSFRTSAIRTSEADTAPSSPTPPSSSDKGKKGGLKPKKKKGKRPSSTAAYLQSRAAQLSRHEAAAKEANLPWRIVAASIVERHPIIMKEPEDWEAAYMEMQEEIAKHGKVFPPELNLMGQAAELDRSDDEVLPELPFKLAPRVTKADRLNDRTTLNRALAERLFLLIRGPVTRGRWDLPMAVLEGGGKGGDMKGLSMRKTHEATVRRFLGDKFEAYVPSNAPVGMHWRVPSEPSTGKTGGEQTYGDKVFFYRAQHLKGRGKVVGEGVEEFVWVTREEMGEYLPQASVEEKEYAELLTNIL 352          
BLAST of EWM26303.1 vs. NCBI_GenBank
Match: gi|553182572|ref|XP_005853752.1| (hypothetical protein NGA_0453300 [Nannochloropsis gaditana CCMP526] >gi|422295313|gb|EKU22612.1| hypothetical protein NGA_0453300 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 714.916 bits (1844), Expect = 0.000e+0
Identity = 351/352 (99.72%), Postives = 351/352 (99.72%), Query Frame = 0
Query:    1 MLLCWLRQGLGDQRALFLGVRAVATLTTGTSAVPAPPARTTKRTLPECVASKRSFRTSAIRTSEADTAPSSPTPPSSSDKGKKGGLKPKKKKGKRPSSTAAYLQSRAAQLSRHEAAAKEANLPWRIVAASIVERHPIIMKEPEDWEAAYMEMQEEIAKHGKVFPPELNLMGQAAELDRSDDEVLPELPFKLAPRVTKADRLNDRTTLNRALAERLFLLIRGPVTRGRWDLPMAVLEGGGKGGDMKGLSMRKTHEATVRRFLGDKFEAYVPSNAPVGMHWRVPSEPSTGKTGGEQTYGDKVFFYRAQHLKGRGKVVGEGVEEFVWVTREEMGEYLPQASVEEKEYAELLTNIL 352
            MLLCWLRQGLGDQRALFLGVRAVATLTTGTSAVPAPPARTTKRTLPECVASKRSFRTSAIRTSEADTAPSSPTPPSSS KGKKGGLKPKKKKGKRPSSTAAYLQSRAAQLSRHEAAAKEANLPWRIVAASIVERHPIIMKEPEDWEAAYMEMQEEIAKHGKVFPPELNLMGQAAELDRSDDEVLPELPFKLAPRVTKADRLNDRTTLNRALAERLFLLIRGPVTRGRWDLPMAVLEGGGKGGDMKGLSMRKTHEATVRRFLGDKFEAYVPSNAPVGMHWRVPSEPSTGKTGGEQTYGDKVFFYRAQHLKGRGKVVGEGVEEFVWVTREEMGEYLPQASVEEKEYAELLTNIL
Sbjct:    1 MLLCWLRQGLGDQRALFLGVRAVATLTTGTSAVPAPPARTTKRTLPECVASKRSFRTSAIRTSEADTAPSSPTPPSSSGKGKKGGLKPKKKKGKRPSSTAAYLQSRAAQLSRHEAAAKEANLPWRIVAASIVERHPIIMKEPEDWEAAYMEMQEEIAKHGKVFPPELNLMGQAAELDRSDDEVLPELPFKLAPRVTKADRLNDRTTLNRALAERLFLLIRGPVTRGRWDLPMAVLEGGGKGGDMKGLSMRKTHEATVRRFLGDKFEAYVPSNAPVGMHWRVPSEPSTGKTGGEQTYGDKVFFYRAQHLKGRGKVVGEGVEEFVWVTREEMGEYLPQASVEEKEYAELLTNIL 352          
BLAST of EWM26303.1 vs. NCBI_GenBank
Match: gi|298715507|emb|CBJ28077.1| (mitochondrial ribosomal protein L46 isoform 2 [Ectocarpus siliculosus])

HSP 1 Score: 131.724 bits (330), Expect = 4.788e-32
Identity = 92/276 (33.33%), Postives = 134/276 (48.55%), Query Frame = 0
Query:   76 SSSDKGKKGGLKPKKKKGKRP-------SSTAAYLQSRAAQLSRHEAAAKEANLPWRIVAASIVERHPIIMKEPEDWEAAYMEMQEEIAKHGKVFPPELNLMGQAAELDRSDDEVLPELPFKLAPRVTKADRLNDRTTLNRALAERLFLLIRGPVTRGRWDLPMAVLEGGGKGGDMKGLSMRKTHEATVRRFL----------GDKFEAYVPSNAPVGMHWRVPSEPSTGKTGGEQTYGDKVFFYRAQHLKGRGKVVGEGVEEFVWVTREEMGEYL 334
            SSS+  KK  ++    K +RP            YL  R       +  A    L W I +A I+ER P+I++E  DW+  + ++Q + A +G  FP E+       E   + ++VL + P  LAPR T AD  NDRTTL+RAL ERL L+++ P +   W LP +  E G         ++R+T E T ++ L           D  + +   N P G  WR   E   G+    + +GDKVF  R Q + G+  VV     E +WVT+ E+GEYL
Sbjct:   34 SSSNLTKKQQIEGFTIKDRRPPRPRVAKQKRKQYLAERKDAFEAEQEKATSLGLDWGIRSALILERLPVIVEEYTDWQRDFWDLQTKQAHYGAKFPAEMGFKYDD-EKSLTMEQVLEQSPVPLAPRRTPADESNDRTTLDRALDERLVLIVK-PRSGDEWRLPESAWEPGE--------TIRQTAERTAQQLLLKSATRKGQRDDVAQLHFVGNCPAGWFWRTADEEQGGQ---HEKFGDKVFINRVQLICGQPTVVKRQAAEHLWVTKHEIGEYL 296          
BLAST of EWM26303.1 vs. NCBI_GenBank
Match: gi|224005451|ref|XP_002291686.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220972205|gb|EED90537.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 114.775 bits (286), Expect = 2.334e-25
Identity = 69/228 (30.26%), Postives = 116/228 (50.88%), Query Frame = 0
Query:  117 AKEANLPWRIVAASIVERHPIIMKEPEDWEAAYMEMQEEIAKHGKVFPPELNLMGQAA----ELDRSDDEVLPELPFKLAPRVTKADRLNDRTTLNRALAERLFLLIRGPVTRG-----RWDLPMAVLEGGGKGGDMKGLSMRKTHEATVRRFLGDKFEAYVPSNAPVGMHWRVPSEPSTGKTGGEQTYGDKVFFYRAQHLKG---RGKVVGEGVEEFVWVTREEMGE 332
            AK+ N PWR+  A +VER P++  +   WE  YME+++ +   GK +P E   M ++      +  + +E+L  LPF  APR T+AD   +  TL+R L ER+FL ++    R      RW LP  ++       D    ++  +        +G+  + + PSN P+ +++RV +  S      E  YG+K+F++R Q   G      +   G +E+ W+TR+E+ E
Sbjct:  128 AKKQNQPWRVRVAVMVERLPVVTPDHPVWEMDYMELKDYLMTFGKEYPEETGFMMRSGREEDHVVETREEMLAGLPFTPAPRETEADHTGNIRTLDRQLKERVFLTLKTASERTASGIPRWTLPSTLVSNEETLLDAAKRAVADS--------VGEDLKLWCPSNTPMAVNYRVYNSKSLSSDFCENYYGEKIFYFRVQWDSGDVSESALEKNGEKEYGWLTRKEIVE 347          
BLAST of EWM26303.1 vs. NCBI_GenBank
Match: gi|397572804|gb|EJK48412.1| (hypothetical protein THAOC_32790 [Thalassiosira oceanica])

HSP 1 Score: 112.849 bits (281), Expect = 1.201e-24
Identity = 69/222 (31.08%), Postives = 120/222 (54.05%), Query Frame = 0
Query:  117 AKEANLPWRIVAASIVERHPIIMKEPEDWEAAYMEMQEEIAKHGKVFPPELNLMGQ----AAELDRSDDEVLPELPFKLAPRVTKADRLNDRTTLNRALAERLFLLIR----GPVTRGRWDLPMAVLEGGGKGGDMKGLSMRKTHEATVRRFLGDKFEAYVPSNAPVGMHWRVPSEPSTGKTGGEQTYGDKVFFYRAQHLKGRGKVVGEGVEEFVWVTREEM 330
            AK+   PWRI  A +VER  ++M + ED+E  +M+++  +  +GK +P E   M +       +  SD+++L  LPF  APR T+AD   +  TL+R L  ++FL ++    G     RW LP A+ +        +  ++ +T E  V   +G+  + ++PSNAP+ +++RV ++       G   +G+K+FFYR Q+  G         +++ W+TREE+
Sbjct:  132 AKQEGKPWRIRVAVMVERPNVVMPDYEDYELEWMDLKNYLMSYGKQYPDETKFMFEPDKPEDHIIESDEDMLAGLPFVPAPRETEADASGNVKTLDRQLKTKVFLAVKSGAEGNRNGPRWTLPSAIPQ--------EDETLLQTAERAVSEAVGEDLQLWLPSNAPMTINYRVYNKNMAEDFRG-NYFGEKIFFYRLQYDSGDVDEEAMTADDYGWLTREEV 344          
BLAST of EWM26303.1 vs. NCBI_GenBank
Match: gi|470461045|ref|XP_004341522.1| (hydrolase, NUDIX domain containing protein [Acanthamoeba castellanii str. Neff] >gi|440798368|gb|ELR19436.1| hydrolase, NUDIX domain containing protein [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 102.834 bits (255), Expect = 2.463e-21
Identity = 85/283 (30.04%), Postives = 123/283 (43.46%), Query Frame = 0
Query:  101 AYLQSRAAQLSRHEAAAKEANLPWRIVAASIVERHPIIMKEPEDWEAAY------------------MEMQEEIAKHGKVF----------------------------PPELNLMGQAAELDRSDDEVLPELPFK---LAPRVTKADRLNDRTTLNRALAERLFLLIRGPVTRGRWDLPMAVLEGGGKGGDMKGLSMRKTHEATVRRFLGDKFEAYVPSNAPVGMHWRVPSEPSTGKTGGEQTYGDKVFFYRAQHLKGRGKVVGEGVEEFVWVTREEMGEYL 334
            AYLQ R  Q+    AA K     WR+V    V+R P+I+  P+  E  Y                  +E+ EE  + G                                 E + + Q AE     +E L ++  K   L+PR+T AD  NDR +LNRALA RL+L+++ P T   W  P        +GG   G +MR+  E  +R  +G K + +  SNAP G  +  P   +     G   +G KVFFY A+++ G      + V +F WVTR+E+ EY 
Sbjct:   43 AYLQ-RLRQMEAEAAAGK----TWRLVGGIAVQRLPLIIPTPDPIEDQYEQFRFDRDNYFSINVERNLELMEEDRRKGSKISKTQKKKKEKKEGVSDAGPAGGKQKGGEQDEADSLYQKAEETAYREETLEDVRAKMERLSPRITAADLANDRKSLNRALASRLYLIVQKPRTEHAWQFP--------QGGRESGETMRQCCERELREEIGTKVKVHFWSNAPAGC-YSYPYPDNYSHNDGH--HGSKVFFYHAEYVSGEPHPDNKEVVDFAWVTRDELQEYF 309          
BLAST of EWM26303.1 vs. NCBI_GenBank
Match: gi|325182496|emb|CCA16951.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 100.523 bits (249), Expect = 1.723e-20
Identity = 77/246 (31.30%), Postives = 118/246 (47.97%), Query Frame = 0
Query:  124 WRIVAASIVERHPIIMKEPEDWEAAYMEMQEEIAKHGKVFPP-----------ELNLMGQAAELDRSDDEVLPELPFKLAPRVTKADRLNDRTTLNRALAERLFLLIRGPVTRGR----WDLPMAVLEGGGKGGDMKGLSMRKTHEATVRRFLGDKFEAYVPSNAPVGMHWRVPSEPSTGKTGGEQTYGDKVFFYRAQHLKGRGKVV--GEGVEEFVWVTREEMGEYLPQASVEEKEYAELLTNIL 352
            WRI+AA I+ R+PII  +PEDW+  + +++ E +    +  P           EL+     +  +  D E++    F LAPR+T+ D++ ++ +L+RALA  + LL R P    R    W  P         G   +G++MRK     ++R  G + E Y   NAP+G    +  E    K   +   G KVF Y+++ + G   V        +FVWVTREE+ EYL      E E A  +  IL
Sbjct:  100 WRIMAACILHRYPIIQPDPEDWQVDFDKVRYEKSLREDLRIPKGFWTVEPGTEELSPEEAPSPFEPDDPELIVGDGFHLAPRITEDDKIKNQKSLDRALASHVVLLTRQPQHLRRSPYDWFFPF--------GEFKEGVTMRKMAIRQLKRTCGKELEVYPIGNAPIGYVSFLHKE----KQSEDAFDGTKVFLYKSR-VMGEASVTLNASRASDFVWVTREELNEYL------EPELASYIYKIL 326          
BLAST of EWM26303.1 vs. NCBI_GenBank
Match: gi|168000063|ref|XP_001752736.1| (predicted protein [Physcomitrella patens] >gi|162696267|gb|EDQ82607.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 98.5969 bits (244), Expect = 2.995e-20
Identity = 73/226 (32.30%), Postives = 117/226 (51.77%), Query Frame = 0
Query:  125 RIVAASIVERHPIIMKE---PED-WEAAYMEMQEEIAKHGKVFPPELNLMGQAAELDRSDDEVLPELPFKLAPRVTKADRLNDRTTLNRALAERLFLLIRGPVTRG-----RWDLPMAVLEGGGKGGDMKGLSMRKTHEATVRRFLGDKFEAYVPSNAPVG-MHWRVPSEPSTGKTGGEQTYGDKVFFYRAQHLKGRGKVVGEGVEEFVWVTREEMGEYLPQASVE 340
            +I+AA +VER P+++ +   P D +E+   + +++  +    +P E      + E D        E  F+ AP VT+ADR NDR +LNRAL+ RL+LLIRG    G      W  P  V             S+R   E  V+ F+ +  + Y+  NAP G + +R+ SEPS            K FF+++Q + G+  V G+ +++F WV++EE+ EYL  + +E
Sbjct:   56 KIIAAMVVERLPVVLPKSAPPVDTFESFSFDWRQQFRRE---YPQEFLDASSSREADEG------EADFEPAPTVTEADRTNDRRSLNRALSRRLYLLIRGIPYGGVKDSFVWHFPEKVYANED--------SLRMCAEEAVKPFVSNPTDLYLVGNAPCGHLTYRL-SEPSY-----------KRFFFKSQLIAGKVHVKGKKIKDFAWVSKEELPEYLDPSDLE 252          
BLAST of EWM26303.1 vs. NCBI_GenBank
Match: gi|1210526082|dbj|GAX15000.1| (hypothetical protein FisN_12Lh304 [Fistulifera solaris])

HSP 1 Score: 99.3673 bits (246), Expect = 4.615e-20
Identity = 76/267 (28.46%), Postives = 129/267 (48.31%), Query Frame = 0
Query:   90 KKKGKRPSSTAAYLQSRAAQLSRHEAAAKEANLPWRIVAASIVERHPIIMKEPEDWEAAYMEMQEEIAKHGK-----VFPPELNLMGQAAELDRSDD--EVLPELP-FKLAPRVTKADRLNDRTTLNRALAERLFLLIRGPVTRGRWDLPMAVLEGGGKGGDMKGLSMRKTHEATVRRFLGDKFEAYVPSNAPVGMHWRVPSEPSTGKTGGEQTYGDKVFFYRAQHLKGRGKVVGEGVEEFVWVTREEMGEYLPQASVEEKEYAELL 348
            K +G++ +   ++   +       E  A++A L W+I  A IVER  +++ + E+WE  + ++Q ++ + GK     +FP       Q   L R+DD  E L ++  F  APR+T+AD+  D  T  R L   ++L ++   T   W  P   L+      D    + R   EA     +G++ E + PSN PV +   + + P T +   EQ YG K FF + Q  +G+ K   + V +F W+ R E+ E + + + +   Y  LL
Sbjct:   64 KPRGEKRNEFRSWFIQKKVNDEYMERKARQAGLGWKIHVAVIVERLNVVLPDQEEWEMEFEDLQNQLQQFGKDYPKGLFPSAAEHSAQETHLTRNDDILEYLEKVKGFTPAPRITEADKSGDVRTTGRKLKTSIYLTVQEDST---WKFPTVALKDDEMLLDA---AKRAIPEA-----VGEELEFWCPSNCPVAVE--MMAFP-TEQQQKEQQYGSKTFFIKVQFDEGKVKTGTQKVTDFAWLDRSEIVERVEKQNGDGAFYKYLL 316          
BLAST of EWM26303.1 vs. NCBI_GenBank
Match: gi|308813091|ref|XP_003083852.1| (Mitochondrial ribosomal protein L17 (ISS) [Ostreococcus tauri] >gi|116055734|emb|CAL57819.1| Ribosomal protein L46 [Ostreococcus tauri] >gi|1199290253|gb|OUS45353.1| mitochondrial ribosomal protein L17 [Ostreococcus tauri])

HSP 1 Score: 97.4413 bits (241), Expect = 5.255e-20
Identity = 66/213 (30.99%), Postives = 103/213 (48.36%), Query Frame = 0
Query:  126 IVAASIVERHPIIMKEPEDWEAAYMEMQEEIAKHGKVFPPELNLMGQAAELDRSDDEVLPELP-FKLAPRVTKADRLNDRTTLNRALAERLFLLIRGPVTRGRWDLPMAVLEGGGKGGDMKGLSMRKTHEATVRRFLGDKFEAYVPSNAPVGMHWRVPSEPSTGKTGGEQTYGDKVFFYRAQHLKGRGKVVGEGVEEFVWVTREEMGEYLPQA 337
            +  + +VER P+++ EP  WE  Y+E  +      KV  P+  +  +          ++  LP F  APR T+ADR  DR+T+ R L E LFL+++     G W  P        K     G +MR+T E +++ F GD  E +V  NAP G +               +  G   F+YR  +++G  ++ G+ VE   WVT+EE+GEY   +
Sbjct:   59 LYGSMLVERIPVVIPEPPAWEREYLEWAQARRDKFKVKLPDEMVEAKG---------LIDNLPDFDAAPRETEADRTGDRSTMYRKLPEFLFLVLKD--KSGTWGFP--------KAPHTDGETMRQTAERSLKDFAGDSLECWVVGNAPQGHY---------------EEQGVTTFYYRGSYVEGELELQGDYVEH-AWVTKEELGEYFDDS 236          
The following BLAST results are available for this feature:
BLAST of EWM26303.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108309|gb|EWM26303.1|0.000e+0100.00mitochondrial ribosomal protein l46 [Nannochlorops... [more]
gi|553182572|ref|XP_005853752.1|0.000e+099.72hypothetical protein NGA_0453300 [Nannochloropsis ... [more]
gi|298715507|emb|CBJ28077.1|4.788e-3233.33mitochondrial ribosomal protein L46 isoform 2 [Ect... [more]
gi|224005451|ref|XP_002291686.1|2.334e-2530.26predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|397572804|gb|EJK48412.1|1.201e-2431.08hypothetical protein THAOC_32790 [Thalassiosira oc... [more]
gi|470461045|ref|XP_004341522.1|2.463e-2130.04hydrolase, NUDIX domain containing protein [Acanth... [more]
gi|325182496|emb|CCA16951.1|1.723e-2031.30conserved hypothetical protein [Albugo laibachii N... [more]
gi|168000063|ref|XP_001752736.1|2.995e-2032.30predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|1210526082|dbj|GAX15000.1|4.615e-2028.46hypothetical protein FisN_12Lh304 [Fistulifera sol... [more]
gi|308813091|ref|XP_003083852.1|5.255e-2030.99Mitochondrial ribosomal protein L17 (ISS) [Ostreoc... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4369rna4369Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications