rna4364, rna4364 (mRNA) Nannochloropsis gaditana

Overview
Namerna4364
Unique Namerna4364
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length983
Alignment locationCM002463.1:388869..390513 +

Link to JBrowse

Properties
Property NameValue
ProductWD40 repeat containing protein
Orig transcript idgnl|cribi|Naga_100078g4.6995.mrna
Orig protein idgnl|cribi|Naga_100078g4.6995
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:388869..390513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100078g4gene4208Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4364rna4364-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26320.1cds4354Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4364 ID=rna4364|Name=rna4364|organism=Nannochloropsis gaditana|type=mRNA|length=983bp
CGTAGAACAGGGCACGCAGGCCATGGGTAAGGTTGTAAGGGACCTTTACT
ATCGAAAGGCGAAGGAGGTCGGCTTTCGGGCCCGCAGCGCGTTCAAACTC
CTGCAGCTGGATGAGGAGTTCGGTCTTTTCAGGAATGTACAGAAGGCCGT
CGATCTGTGTGCCGCACCCGGGAGTTGGAGTCAGGTTTTAGCCACGCGTT
TATATCCTGACAGTGCCTTCACTGATGACAAAGGTGGTGAAAGAGAGCGA
GTAATTGCTGTGGATCTGCAAGAAATGGCGCCGATCCCAGGTGTGCGTCA
ATTGCAGGGAGACATTACGTCTCAGGCCACAGCCGACACAATCATCGGGC
ACTTTGAGGGGCAAAGGGTCGATTTAGTTGTCTGCGACGGTGCCCCTGAC
GTGACGGGTTTGCACGATATGGATGAATTTTTACAAGCCCAGCTAATATT
CGGAGCGCTTGCCATTACGACGCACGTCCTTGCTTCGGGGGGGAAGTTCG
TCGCGAAGGTCTTCCGGGGCCGCGACTTGACCTTGTTGGCGGCTCAGCTG
CGTCTCTTCTTTGAAAGCATAACGGTTGCCAAGCCAGCGAGTAGTCGTAT
CAACTCTAGTGAATGTTTTGTCGTGTGCGAGGGGTTCCAGGGGCCTATAC
CTGCGCATGGTTACATCCCTGAGATGGTCACTCCCACATTGGGACAAGGC
AGTCGAGACCAGGCGGCTCAGACGGAGAAGGATGCGCAAAGGGACGAAGA
GGAAGATTCTGGGGAGAATCGAGCACTGAAAATTGCGGTCAGGTGTTACG
TGGAACAGGGGGACTTGTCCGGTTTCCCAATGCCTGGTATACCGGCTGAT
GTGTCTAAAGATAGATAGATGCGCATTGAAAAGGAATACACTTGGTGTAT
ACACGCACAAACGGCTGCCTTTTTGGGCAGAGAGAGATGCCCATTACTTC
ATGGTCTTCTGGGTCCAGCAAAGGGGCAACTTC
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protein sequence of rna4364

>rna4364-protein ID=rna4364-protein|Name=rna4364|organism=Nannochloropsis gaditana|type=polypeptide|length=466bp
MSSPSLSCSRKIPSCTGVGTHPTLPSIRGRITALKTRQPRIMPPETLFPM
GYHHTGPMHRSFARGPLNGAGEMCDASDRPLLCLSLSKDEEELVVGSADH
ALYAYNLQTCKPTRKLYSKAHGHIDWVTCVVHMDNGQVLSGGGDGKICVW
PPSRLSPSSFPLKHNEDGAYKRPACPNRLTHCQDLDGHASSVSKILPVPE
SDMAFSGSYDGLIKLWNLTSKQALTFDAEGRSTKSNWSFGKNGVASDHSL
SRCGTLDPVLDFAFDTEQKQLMSGTRKGNCKVWDLHTAKQIGTVRAAHRG
PVTCLTRWSASIMVTGGQDGVVKVWDTRRGMPLVTQAVCCHVNPVQGTSS
AVSCLEKTGGLLATGGADKRVCLLDPRRNFQTLHVFDHHQAPIYTLRYAI
SAESPVLFSGAGDGTVHCVNLLSNAVLYGLHPTWGPVRALATTTHLQADK
KLVAAGEDGKVVIFRF
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mRNA from alignment at CM002463.1:388869..390513+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4364 ID=rna4364|Name=rna4364|organism=Nannochloropsis gaditana|type=mRNA|length=1645bp|location=Sequence derived from alignment at CM002463.1:388869..390513+ (Nannochloropsis gaditana)
CCCACCCATTATTCTACAGGGAAATACAAGCTGCATAGTACTTTACGCTG
ATGGTGGGAAAGAGATcatgtcttctccttctttaaGCTGCTCCAGAAAG
ATTCCATCCTGCACAGGTGTCGGCACACACCCCACGCTCCCCTCTATACG
TGGTCGGATCACCGCCTTGAAGACACGCCAGCCACGTATCATGCCTCCAG
AGACATTATTTCCGATGGGATACCATCACACAGGGCCGATGCACCGAAGT
TTTGCTCGTGGACCTTTAAATGGGGCGGGTGAAATGTGCGACGCCAGCGA
CCGCCCACTCCTCTGTTTGAGCTTATcaaaagacgaagaggaattGGTGG
TAGGAAGTGCGGACCATGCCCTGTATGCATATAATCTCCAGACATGCAAG
CCTACGCGTAAGCTGTACTCTAAGGCTCATGGGCACATCGATTGGGTCAC
CTGCGTGGTGCACATGGACAATGGCCAAGTGCTGTCCGGCGGGGGTGACG
GGAAAATATGCGTgtggcctccttctcgcttgTCGCCTTCATCTTTTCCG
CTGAAACATAATGAGGACGGCGCTTATAAGCGACCGGCTTGCCCAAATAG
GCTCACTCATTGTCAGGATTTGGACGGACACGCGAGTTCAGTCAGTAAAA
TATTGCCAGTGCCGGAATCGGACATGGCTTTCTCCGGGAGTTATGACGGC
TTGATCAAGTTGTGGAATCTAACCTCCAAGCAAGCCTTAACATTCGATGC
GGAAGGTAGGTCTACTAAAAGCAATTGGAGCTTTGGTAAAAATGGGGTCG
CCAGTGACCACAGCCTGAGTAGATGTGGGACCTTGGATCCCGTTCTCGAC
TTCGCCTTTGACACTGAACAGAAGCAGCTGATGAGCGGCACGCGGAAGGG
AAATTGTAAGGTATGGGATTTACATACAGCCAAGCAAATTGGGACTGTGA
GAGCTGCCCACCGCGGTCCTGTAACGTGCCTGACCCGGTGGTCGGCCTCG
ATAATGGTCACGGGGGGACAGGACGGCGTGGTCAAGGTCTGGGATACACG
GCGGGGGATGCCTCTGGTCACACAAGCTGTCTGCTGCCACGTCAATCCTG
TGCAAGGCACTTCAAGCGCAGTGTCGTGCTTGGAAAAGACGGGTGGTCTG
TTGGCGACGGGCGGGGCCGACAAGCGTGTGTGCCTTTTGGATCCTCGGAG
AAATTTCCAGACCCTTCATGTCTTTGATCATCATCAGGCTCCAATTTATA
CCTTAAGATACGCAATTTCGGCGGAAAGTCCCGTTCTATTCAGCGGCGCA
GGCGACGGGACCGTCCACTGTGTGAATTTGCTTTCGAATGCTGTGCTCTA
CGGGCTGCATCCGACATGGGGGCCTGTCCGGGCTCTGGCCACTACAACCC
ACCTGCAGGCAGACAAAAAGCTCGTGGcggccggggaggacggtAAGGTT
GTGATATTTAGATTCTAATCCATTTCTATCTAGGGACTGGTAAAGGAAGA
ATTGCACTTGTGCAGATTAATTTTGTGCAGGAAACGCAGAAAGTTTGTGG
AAAATTACAGCACGATGACTACAAGTGTGAATACCTCAGCATGTAAATAT
ATAGAGAATTCACCACTCATGCCTCTGGAGACATTACAACATTGA
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Coding sequence (CDS) from alignment at CM002463.1:388869..390513+

>rna4364 ID=rna4364|Name=rna4364|organism=Nannochloropsis gaditana|type=CDS|length=1401bp|location=Sequence derived from alignment at CM002463.1:388869..390513+ (Nannochloropsis gaditana)
atgtcttctccttctttaaGCTGCTCCAGAAAGATTCCATCCTGCACAGG
TGTCGGCACACACCCCACGCTCCCCTCTATACGTGGTCGGATCACCGCCT
TGAAGACACGCCAGCCACGTATCATGCCTCCAGAGACATTATTTCCGATG
GGATACCATCACACAGGGCCGATGCACCGAAGTTTTGCTCGTGGACCTTT
AAATGGGGCGGGTGAAATGTGCGACGCCAGCGACCGCCCACTCCTCTGTT
TGAGCTTATcaaaagacgaagaggaattGGTGGTAGGAAGTGCGGACCAT
GCCCTGTATGCATATAATCTCCAGACATGCAAGCCTACGCGTAAGCTGTA
CTCTAAGGCTCATGGGCACATCGATTGGGTCACCTGCGTGGTGCACATGG
ACAATGGCCAAGTGCTGTCCGGCGGGGGTGACGGGAAAATATGCGTgtgg
cctccttctcgcttgTCGCCTTCATCTTTTCCGCTGAAACATAATGAGGA
CGGCGCTTATAAGCGACCGGCTTGCCCAAATAGGCTCACTCATTGTCAGG
ATTTGGACGGACACGCGAGTTCAGTCAGTAAAATATTGCCAGTGCCGGAA
TCGGACATGGCTTTCTCCGGGAGTTATGACGGCTTGATCAAGTTGTGGAA
TCTAACCTCCAAGCAAGCCTTAACATTCGATGCGGAAGGTAGGTCTACTA
AAAGCAATTGGAGCTTTGGTAAAAATGGGGTCGCCAGTGACCACAGCCTG
AGTAGATGTGGGACCTTGGATCCCGTTCTCGACTTCGCCTTTGACACTGA
ACAGAAGCAGCTGATGAGCGGCACGCGGAAGGGAAATTGTAAGGTATGGG
ATTTACATACAGCCAAGCAAATTGGGACTGTGAGAGCTGCCCACCGCGGT
CCTGTAACGTGCCTGACCCGGTGGTCGGCCTCGATAATGGTCACGGGGGG
ACAGGACGGCGTGGTCAAGGTCTGGGATACACGGCGGGGGATGCCTCTGG
TCACACAAGCTGTCTGCTGCCACGTCAATCCTGTGCAAGGCACTTCAAGC
GCAGTGTCGTGCTTGGAAAAGACGGGTGGTCTGTTGGCGACGGGCGGGGC
CGACAAGCGTGTGTGCCTTTTGGATCCTCGGAGAAATTTCCAGACCCTTC
ATGTCTTTGATCATCATCAGGCTCCAATTTATACCTTAAGATACGCAATT
TCGGCGGAAAGTCCCGTTCTATTCAGCGGCGCAGGCGACGGGACCGTCCA
CTGTGTGAATTTGCTTTCGAATGCTGTGCTCTACGGGCTGCATCCGACAT
GGGGGCCTGTCCGGGCTCTGGCCACTACAACCCACCTGCAGGCAGACAAA
AAGCTCGTGGcggccggggaggacggtAAGGTTGTGATATTTAGATTCTA
A
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Synonyms
Publications