|
|
Properties
| Property Name | Value |
|---|
| Product | u2 small nuclear auxiliary small |
| Orig transcript id | gnl|cribi|Naga_100078g8.7005.mrna |
| Orig protein id | gnl|cribi|Naga_100078g8.7005 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002463.1 | supercontig | CM002463.1:380869..382440 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4360 ID=rna4360|Name=rna4360|organism=Nannochloropsis gaditana|type=mRNA|length=2420bp
AACAAAACGCCCCGCTGCAAACACCCACAAGCACGTGACTATATCCTTTT
CTCGAAGCGAAACCTGCTTCATTCAACTCAGCCAGAGCCTTTACCCTGTC
CCATCACGCATGCATGCAAATGCAGGCATCGACTTGTTTCCTAGTTATTC
CATACTTGTGCACTGTGCGTTTCCACGGCGTGATCGACTCCTCGATCATC
AGCGACAGAGCAGACCTCCCGTGCAAGACCATCTATTGGATCATTTTCCC
ACCCATCCCGGCATTGCCAGGTTATGCGGAAAGCATCGACGACTGCAATA
CGGCTTGCTGCGCCGGTAAGCTCGGGTAAGCCAGCGACTTTTTTCCGGCC
GCGCTTTGCTCGTGTTTTATCGCCATCGTCATATTTGTCCGCCTGCTCTT
TCACACGGGTAAGTCCGCTTTTGGTGCCCGTCCTGTCATGATCGGGTCTA
AAGCGTCGATATGGGAAGATATTTCTCATCTTGTTGGCTAATTGAATCTT
GATTATCTCATTTTCTGATCCTTGTCGTCGTGCCGGACACATTCTATCCC
CTGCCCCCTCCCAGCAGCAGCGCGCCTTGTGTTCCCCTCCGTCTTCCTCT
TCTTCCGTCCCGCATACTGCGCTCTCATTATCATCCAGCATTTACGATCA
TCACGGTCCTCACTCCAGCACGAATGGAAACTCCTCAACAGCCATCTCCC
TTGCCGGTGCCGTCGCTGCTATCCTGACTCTGACCGCCCTCACTCCCTCC
CGTCAAGACGCTGGCACTTTTGATGCCCGGCCGCCTGCGCGTCCCCAACG
GGTAAAGTACTCTTTGTCCACATACTCGGGCAATGAATTCATCGAGGACC
GGCACGAAATTCGGGAGATCGTGGGCGGGGACATCTTTTGCGGCGTCTTT
GATGGGCATGGGGGATGGCAGGTGGCCGAGTATGCCTCCGTGCACCTGAG
CAAGAATCTGGAGATCGAGTTGGCGAACATGGGCCACCGCACCGAGTCGG
AGCAGGTGATTAAAGCCTTGGTTCGAGCTTTCGAACGGACAGACCGGGGC
GTCATCCACAAGGTGCACCACGCCTTCGAAATTGGCTTGGGCCATGTAGC
CAAGGTCGGTGCCTGCGCGCTGGCGGTGCTGATCAAGGGCCACCACCTGT
ACGTGGCCAACGCGGGGGACTGCAGGGCTGTGATTGGGAAGCGGTCGCCC
CCGCCCAAGGAGAAAGCGGCCGGTGGAAAGCGGGGAAAGAAAGCGTCCCC
TGTCAGCGGGACTGGCCGAGGCGGAGACTACCACGCCGTGGCTCTCAGCG
AGGACCACAACGCCAAACTCCCCAAGGAAGCTTCGGCGTTGGCACAAGCG
CACCCCGGGGAGCCCGACATTGTCAAGTGCAAGCACGCCAACGCGTGCTA
CGTGAAAGGCCGGCTGCAGCCCACCAGGGCTTTGGGGGACGCTTACCTGA
AGTACTCGGAATTCAACGGGCGGCCCAACCGCTCAGACTCGAGCGCAGGC
CGGTACATTCCCCCGCCCTATACGCCGCCTTACATCACAGCGACGCCGGA
GGTGCGTGTATATGAAGACATTTTGGACGACCCAAGTGCGGAGTTTGTCA
TCCTTGCCTCGGATGGCGTCTGGGACCTGTGCTCGAACGAGGAGGCCGTG
CGTTTCGTGGGACGAGCCATCGCGGACGGGGACTCCATGCACGTAAGCCA
GCGCTTGATCGCGCACGCCCTTCAGTGTCGCGCCAAGGACTTGGGGATGA
CGGTGGAGGAACTCAGGGCCCTGCCCCCGGGGAAATCGCGCCGGTCCAAG
CACGACGATATGACTGCCCTGGTCGTCATGCTACAGGGTGGGGCGGCGGG
GGTGGAGCCTGAATGCGCGGCAGCCAATCCACAGGACGGCAAGGTAGACA
CCAGCATCGATCCGACCATACCACCGGAAGAGTGGGGAGAGGGGGGAACC
GCGATGGGGTAAGAGGGAACATCAGGAGTCGAGAAGTTAGGGGAGCACGT
GTCAACGCCCGGATAAAGTACGTGCGGAATTTTTGGTGAAAGTTGACGCA
GGCATGTTGAGGCGTCACGACGCCTTGAGGGTGGCTCCATTATGTGAAAG
GCAAGTGCAGAGATGCCCACAAAAAGCAAACTCGTTAAGTAAATTGATAC
TCTGCTTCTTTTTTGGCAATCTGATTTTTGTTGTCCAAGAAAGCAGCCAT
GCCATATCTGTTGAAAATGATGAAGCTGGTTCGCCAACAATGATGCGGAC
CTGCCACCTTTCCACGCAAGACTCGAATTGTCTCGCCCGAGCCGGTGAAC
ACCATGTATATGCCAACAGGATTTACAAAAACTCGCGTGACCCTAGAAGA
CTGTTAATGTCATGAGCAAATGGCAAGTGATATATCGAAAAGGGTCATAG
GAAAAGAAGAGATCATTTCC back to topprotein sequence of rna4360 >rna4360-protein ID=rna4360-protein|Name=rna4360|organism=Nannochloropsis gaditana|type=polypeptide|length=366bp
MSYYGRGGSGDDYGRDRGYRGGRDRGDRGGYYEDRRGGDRRNDRRGPRED
GGRNWRDRHLGNSKGGAEHLARIHGTEEDKVNCPFYFKIGACRHGERCSR
KHNKPPFSQTLLLKHMYKNPASALFTAPARGERAAPQGANDATNQAGLDD
FEDFFEEVYEELAKFGEVEGMHVCDNLGEHMIGNVYAKYADEEEADEARQ
ALNGRFYAGRVLEVEFSPVTDFREARCRQYDEGQCTYGPYCNFLHVKTIS
RALRRDLERQARRRREPRGRGGMDVGGLGSRRPRALLPEMHTRIVILMRR
ESIRVIVVYCVRDSPPTSNGILCPPRQANLRACISLLSRLSMSIALFLFN
RYFLPSTYVWIGTLLR back to topmRNA from alignment at CM002463.1:380869..382440- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4360 ID=rna4360|Name=rna4360|organism=Nannochloropsis gaditana|type=mRNA|length=1572bp|location=Sequence derived from alignment at CM002463.1:380869..382440- (Nannochloropsis gaditana)
ATGAGCTACTACGGGCGCGGAGGGAGCGGCGACGATTATGGTCGTGATCG
CGGGTACCGAGGTGGACGTGATCGTGGTGACCGAGGAGGCTACTATGAAG
ACCGTCGAGGTGGAGACAGACGCAATGATCGACGCGGTAAGTTCTGTAGG
CGGGTGGAGGAATCATATGGGGTGTGCGATGTGTAGATGTTTGTCCGGAC
GAAATGAGTCGTAAAATCGAAAAATCTGCCGAAAGGCGCCATGCTCCTCC
ATCATATGTAGTTTCCTCATCGGATTTTGCTCCTAAATCGCCCACAAACC
TAGGCCCTCGCGAGGATGGCGGGCGCAATTGGCGCGACCGCCACCTAGGA
AATTCCAAGGGGGGGGCAGAGCATTTGGCCCGGATTCATGGCACGGAAGA
GGACAAAGTGAATTGCCCTTTTTACTTCAAAATTGGGGCATGTCGGCACG
GAGAGCGGTGCTCGCGGAAGCACAACAAGCCTCCCTTCTCTCAGACTTTG
TTGTTGAAGCATATGTACAAGAATCCGGCCTCAGCACTCTTTACGGCTCC
AGCGCGGGGAGAAAGGGCCGCCCCCCAAGGTGCGAATGATGCGACGAACC
AAGCGGGCCTGGATGACTTCGAAGATTTTTTTGAAGAAGTGTACGAGGAG
CTGGCAAAGTTCGGGGAGGTGGAAGGTATGCACGTCTGCGACAATCTGGG
CGAGCACATGATCGGAAACGTGTACGCCAAGTACGCAGACGAGGAAGAGG
CAGACGAGGCCCGACAAGCCTTGAACGGGCGGTTTTACGCCGGCCGGGTC
CTGGAGGTGGAGTTCTCGCCCGTGACGGACTTTCGAGAGGCGCGCTGCCG
CCAGTATGACGAGGGGCAGTGCACGTACGGGCCCTATTGCAACTTCTTGC
ACGTAAAGACCATTTCAAGGGCGCTGCGTCGAGACCTTGAACGGCAAGCG
CGGCGTAGGCGGGAACGTAAGCGGAGCCGGTCGGAGGACCGGAGGAGTAG
GAGCTCAGAGAGGGGCCATAGGCGGGAGGTGGGGGAGGAGGAGGAGGACA
GGGGGGAGGATGACGACTTGCCGAAGGAGGACAGGGCGGGGAAGGAGGAA
AGGGAGAAGGACGGGAGGGAGGAGGAAGAGAGGGAGGGGGAGGCGGGGGG
GAGAAATGGGGAGGGGGCGGGAGGGCAGGTGCACGAGGAGGAAGGAGCGG
GGGGCGCGGAGGGCATGTAGGGAGAAGACTCAGTCGGGCATGCACCCGGC
CTACGGGAAGCACAACTAAGCGAGAGGGAGAGGCGGCATGGACGTGGGGG
GGCTAGGTAGCCGCAGGCCTCGAGCCCTTTTGCCGGAGATGCACACAAGA
ATCGTGATCCTGATGCGCCGCGAAAGCATACGTGTGATCGTGGTGTATTG
CGTGAGAGATTCGCCGCCAACAAGCAATGGGATCCTATGCCCGCCCCGAC
AAGCGAACCTCAGAGCGTGCATCAGTCTCCTTTCGCGCCTGTCGATGAGT
ATTGCCCTGTTTCTTTTTAATCGTTACTTCCTTCCTAGCACGTACGTATG
GATTGGTACACTCCTACGGTAA back to topCoding sequence (CDS) from alignment at CM002463.1:380869..382440- >rna4360 ID=rna4360|Name=rna4360|organism=Nannochloropsis gaditana|type=CDS|length=3303bp|location=Sequence derived from alignment at CM002463.1:380869..382440- (Nannochloropsis gaditana)
CGAGAGGGAGAGGCGGCATGGACGTGGGGGGGCTAGGTAGCCGCAGGCCT
CGAGCCCTTTTGCCGGAGATGCACACAAGAATCGTGATCCTGATGCGCCG
CGAAAGCATACGTGTGATCGTGGTGTATTGCGTGAGAGATTCGCCGCCAA
CAAGCAATGGGATCCTATGCCCGCCCCGACAAGCGAACCTCAGAGCGTGC
ATCAGTCTCCTTTCGCGCCTGTCGATGAGTATTGCCCTGTTTCTTTTTAA
TCGTTACTTCCTTCCTAGCACGTACGTATGGATTGGTACACTCCTACGGT
AAGCCCTCGCGAGGATGGCGGGCGCAATTGGCGCGACCGCCACCTAGGAA
ATTCCAAGGGGGGGGCAGAGCATTTGGCCCGGATTCATGGCACGGAAGAG
GACAAAGTGAATTGCCCTTTTTACTTCAAAATTGGGGCATGTCGGCACGG
AGAGCGGTGCTCGCGGAAGCACAACAAGCCTCCCTTCTCTCAGACTTTGT
TGTTGAAGCATATGTACAAGAATCCGGCCTCAGCACTCTTTACGGCTCCA
GCGCGGGGAGAAAGGGCCGCCCCCCAAGGTGCGAATGATGCGACGAACCA
AGCGGGCCTGGATGACTTCGAAGATTTTTTTGAAGAAGTGTACGAGGAGC
TGGCAAAGTTCGGGGAGGTGGAAGGTATGCACGTCTGCGACAATCTGGGC
GAGCACATGATCGGAAACGTGTACGCCAAGTACGCAGACGAGGAAGAGGC
AGACGAGGCCCGACAAGCCTTGAACGGGCGGTTTTACGCCGGCCGGGTCC
TGGAGGTGGAGTTCTCGCCCGTGACGGACTTTCGAGAGGCGCGCTGCCGC
CAGTATGACGAGGGGCAGTGCACGTACGGGCCCTATTGCAACTTCTTGCA
CGTAAAGACCATTTCAAGGGCGCTGCGTCGAGACCTTGAACGGCAAGCGC
GGCGTAGGCGGGAACATGAGCTACTACGGGCGCGGAGGGAGCGGCGACGA
TTATGGTCGTGATCGCGGGTACCGAGGTGGACGTGATCGTGGTGACCGAG
GAGGCTACTATGAAGACCGTCGAGGTGGAGACAGACGCAATGATCGACGC
GCGAGAGGGAGAGGCGGCATGGACGTGGGGGGGCTAGGTAGCCGCAGGCC
TCGAGCCCTTTTGCCGGAGATGCACACAAGAATCGTGATCCTGATGCGCC
GCGAAAGCATACGTGTGATCGTGGTGTATTGCGTGAGAGATTCGCCGCCA
ACAAGCAATGGGATCCTATGCCCGCCCCGACAAGCGAACCTCAGAGCGTG
CATCAGTCTCCTTTCGCGCCTGTCGATGAGTATTGCCCTGTTTCTTTTTA
ATCGTTACTTCCTTCCTAGCACGTACGTATGGATTGGTACACTCCTACGG
TAAGCCCTCGCGAGGATGGCGGGCGCAATTGGCGCGACCGCCACCTAGGA
AATTCCAAGGGGGGGGCAGAGCATTTGGCCCGGATTCATGGCACGGAAGA
GGACAAAGTGAATTGCCCTTTTTACTTCAAAATTGGGGCATGTCGGCACG
GAGAGCGGTGCTCGCGGAAGCACAACAAGCCTCCCTTCTCTCAGACTTTG
TTGTTGAAGCATATGTACAAGAATCCGGCCTCAGCACTCTTTACGGCTCC
AGCGCGGGGAGAAAGGGCCGCCCCCCAAGGTGCGAATGATGCGACGAACC
AAGCGGGCCTGGATGACTTCGAAGATTTTTTTGAAGAAGTGTACGAGGAG
CTGGCAAAGTTCGGGGAGGTGGAAGGTATGCACGTCTGCGACAATCTGGG
CGAGCACATGATCGGAAACGTGTACGCCAAGTACGCAGACGAGGAAGAGG
CAGACGAGGCCCGACAAGCCTTGAACGGGCGGTTTTACGCCGGCCGGGTC
CTGGAGGTGGAGTTCTCGCCCGTGACGGACTTTCGAGAGGCGCGCTGCCG
CCAGTATGACGAGGGGCAGTGCACGTACGGGCCCTATTGCAACTTCTTGC
ACGTAAAGACCATTTCAAGGGCGCTGCGTCGAGACCTTGAACGGCAAGCG
CGGCGTAGGCGGGAACATGAGCTACTACGGGCGCGGAGGGAGCGGCGACG
ATTATGGTCGTGATCGCGGGTACCGAGGTGGACGTGATCGTGGTGACCGA
GGAGGCTACTATGAAGACCGTCGAGGTGGAGACAGACGCAATGATCGACG
CGCGAGAGGGAGAGGCGGCATGGACGTGGGGGGGCTAGGTAGCCGCAGGC
CTCGAGCCCTTTTGCCGGAGATGCACACAAGAATCGTGATCCTGATGCGC
CGCGAAAGCATACGTGTGATCGTGGTGTATTGCGTGAGAGATTCGCCGCC
AACAAGCAATGGGATCCTATGCCCGCCCCGACAAGCGAACCTCAGAGCGT
GCATCAGTCTCCTTTCGCGCCTGTCGATGAGTATTGCCCTGTTTCTTTTT
AATCGTTACTTCCTTCCTAGCACGTACGTATGGATTGGTACACTCCTACG
GTAAGCCCTCGCGAGGATGGCGGGCGCAATTGGCGCGACCGCCACCTAGG
AAATTCCAAGGGGGGGGCAGAGCATTTGGCCCGGATTCATGGCACGGAAG
AGGACAAAGTGAATTGCCCTTTTTACTTCAAAATTGGGGCATGTCGGCAC
GGAGAGCGGTGCTCGCGGAAGCACAACAAGCCTCCCTTCTCTCAGACTTT
GTTGTTGAAGCATATGTACAAGAATCCGGCCTCAGCACTCTTTACGGCTC
CAGCGCGGGGAGAAAGGGCCGCCCCCCAAGGTGCGAATGATGCGACGAAC
CAAGCGGGCCTGGATGACTTCGAAGATTTTTTTGAAGAAGTGTACGAGGA
GCTGGCAAAGTTCGGGGAGGTGGAAGGTATGCACGTCTGCGACAATCTGG
GCGAGCACATGATCGGAAACGTGTACGCCAAGTACGCAGACGAGGAAGAG
GCAGACGAGGCCCGACAAGCCTTGAACGGGCGGTTTTACGCCGGCCGGGT
CCTGGAGGTGGAGTTCTCGCCCGTGACGGACTTTCGAGAGGCGCGCTGCC
GCCAGTATGACGAGGGGCAGTGCACGTACGGGCCCTATTGCAACTTCTTG
CACGTAAAGACCATTTCAAGGGCGCTGCGTCGAGACCTTGAACGGCAAGC
GCGGCGTAGGCGGGAACATGAGCTACTACGGGCGCGGAGGGAGCGGCGAC
GATTATGGTCGTGATCGCGGGTACCGAGGTGGACGTGATCGTGGTGACCG
AGGAGGCTACTATGAAGACCGTCGAGGTGGAGACAGACGCAATGATCGAC
GCG back to top
|