EWM26330.1, cds4350 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26330.1 vs. NCBI_GenBank
Match: gi|585108337|gb|EWM26330.1| (u2 small nuclear auxiliary small [Nannochloropsis gaditana]) HSP 1 Score: 748.429 bits (1931), Expect = 0.000e+0 Identity = 366/366 (100.00%), Postives = 366/366 (100.00%), Query Frame = 0
Query: 1 MSYYGRGGSGDDYGRDRGYRGGRDRGDRGGYYEDRRGGDRRNDRRGPREDGGRNWRDRHLGNSKGGAEHLARIHGTEEDKVNCPFYFKIGACRHGERCSRKHNKPPFSQTLLLKHMYKNPASALFTAPARGERAAPQGANDATNQAGLDDFEDFFEEVYEELAKFGEVEGMHVCDNLGEHMIGNVYAKYADEEEADEARQALNGRFYAGRVLEVEFSPVTDFREARCRQYDEGQCTYGPYCNFLHVKTISRALRRDLERQARRRREPRGRGGMDVGGLGSRRPRALLPEMHTRIVILMRRESIRVIVVYCVRDSPPTSNGILCPPRQANLRACISLLSRLSMSIALFLFNRYFLPSTYVWIGTLLR 366
MSYYGRGGSGDDYGRDRGYRGGRDRGDRGGYYEDRRGGDRRNDRRGPREDGGRNWRDRHLGNSKGGAEHLARIHGTEEDKVNCPFYFKIGACRHGERCSRKHNKPPFSQTLLLKHMYKNPASALFTAPARGERAAPQGANDATNQAGLDDFEDFFEEVYEELAKFGEVEGMHVCDNLGEHMIGNVYAKYADEEEADEARQALNGRFYAGRVLEVEFSPVTDFREARCRQYDEGQCTYGPYCNFLHVKTISRALRRDLERQARRRREPRGRGGMDVGGLGSRRPRALLPEMHTRIVILMRRESIRVIVVYCVRDSPPTSNGILCPPRQANLRACISLLSRLSMSIALFLFNRYFLPSTYVWIGTLLR
Sbjct: 1 MSYYGRGGSGDDYGRDRGYRGGRDRGDRGGYYEDRRGGDRRNDRRGPREDGGRNWRDRHLGNSKGGAEHLARIHGTEEDKVNCPFYFKIGACRHGERCSRKHNKPPFSQTLLLKHMYKNPASALFTAPARGERAAPQGANDATNQAGLDDFEDFFEEVYEELAKFGEVEGMHVCDNLGEHMIGNVYAKYADEEEADEARQALNGRFYAGRVLEVEFSPVTDFREARCRQYDEGQCTYGPYCNFLHVKTISRALRRDLERQARRRREPRGRGGMDVGGLGSRRPRALLPEMHTRIVILMRRESIRVIVVYCVRDSPPTSNGILCPPRQANLRACISLLSRLSMSIALFLFNRYFLPSTYVWIGTLLR 366
BLAST of EWM26330.1 vs. NCBI_GenBank
Match: gi|553186016|ref|XP_005854346.1| (splicing factor U2AF 35 kDa subunit, partial [Nannochloropsis gaditana CCMP526] >gi|422294712|gb|EKU22012.1| splicing factor U2AF 35 kDa subunit, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 445.277 bits (1144), Expect = 2.786e-154 Identity = 257/257 (100.00%), Postives = 257/257 (100.00%), Query Frame = 0
Query: 1 MSYYGRGGSGDDYGRDRGYRGGRDRGDRGGYYEDRRGGDRRNDRRGPREDGGRNWRDRHLGNSKGGAEHLARIHGTEEDKVNCPFYFKIGACRHGERCSRKHNKPPFSQTLLLKHMYKNPASALFTAPARGERAAPQGANDATNQAGLDDFEDFFEEVYEELAKFGEVEGMHVCDNLGEHMIGNVYAKYADEEEADEARQALNGRFYAGRVLEVEFSPVTDFREARCRQYDEGQCTYGPYCNFLHVKTISRALRRDL 257
MSYYGRGGSGDDYGRDRGYRGGRDRGDRGGYYEDRRGGDRRNDRRGPREDGGRNWRDRHLGNSKGGAEHLARIHGTEEDKVNCPFYFKIGACRHGERCSRKHNKPPFSQTLLLKHMYKNPASALFTAPARGERAAPQGANDATNQAGLDDFEDFFEEVYEELAKFGEVEGMHVCDNLGEHMIGNVYAKYADEEEADEARQALNGRFYAGRVLEVEFSPVTDFREARCRQYDEGQCTYGPYCNFLHVKTISRALRRDL
Sbjct: 1 MSYYGRGGSGDDYGRDRGYRGGRDRGDRGGYYEDRRGGDRRNDRRGPREDGGRNWRDRHLGNSKGGAEHLARIHGTEEDKVNCPFYFKIGACRHGERCSRKHNKPPFSQTLLLKHMYKNPASALFTAPARGERAAPQGANDATNQAGLDDFEDFFEEVYEELAKFGEVEGMHVCDNLGEHMIGNVYAKYADEEEADEARQALNGRFYAGRVLEVEFSPVTDFREARCRQYDEGQCTYGPYCNFLHVKTISRALRRDL 257
BLAST of EWM26330.1 vs. NCBI_GenBank
Match: gi|635367179|emb|CCI44589.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 281.182 bits (718), Expect = 2.228e-89 Identity = 145/252 (57.54%), Postives = 174/252 (69.05%), Query Frame = 0
Query: 18 GYRGGRDRGDRGGYYEDRRGGDRRNDRRGPREDGGRNWRDRHLGNSKGGAEHLARIHGTEEDKVNCPFYFKIGACRHGERCSRKHNKPPFSQTLLLKHMYKNPASALFTAPARGERAAPQGANDATNQAGLD-DFEDFFEEVYEELAKFGEVEGMHVCDNLGEHMIGNVYAKYADEEEADEARQALNGRFYAGRVLEVEFSPVTDFREARCRQYDEGQCTYGPYCNFLHVKTISRALRRDLERQARRRREPR 268
YRG RDR G N+RRG G GGAEHLARIHGTEED+VNCPFYFKIGACRHG+RCSR HNKP FSQT+L+ HMY+NP S + A G A +Q +D DFEDF+EEV+EEL KFG+VE +++CDNLG+H++GNVY KY DEE A A+++L GRFYAGR L EFSPVTDFREARCRQ+DEG C G YCNF+HVKT+SR+++R+LER R + PR
Sbjct: 25 SYRGFRDRDHVPG-----------NNRRGGEPTTG------------GGAEHLARIHGTEEDRVNCPFYFKIGACRHGDRCSRLHNKPVFSQTILVSHMYQNPLSQII---------AQNGDPSALDQKKVDEDFEDFYEEVFEELCKFGKVEELNICDNLGDHLVGNVYVKYEDEEHAAAAQKSLYGRFYAGRPLVCEFSPVTDFREARCRQFDEGTCNRGGYCNFMHVKTVSRSMQRELERLYNRYKPPR 244
BLAST of EWM26330.1 vs. NCBI_GenBank
Match: gi|325180898|emb|CCA15308.1| (splicing factor U2AF 35 kDa subunit putative [Albugo laibachii Nc14]) HSP 1 Score: 277.715 bits (709), Expect = 5.899e-88 Identity = 132/205 (64.39%), Postives = 160/205 (78.05%), Query Frame = 0
Query: 65 GGAEHLARIHGTEEDKVNCPFYFKIGACRHGERCSRKHNKPPFSQTLLLKHMYKNPASALFTAPARGERAAPQGANDATNQAGLD-DFEDFFEEVYEELAKFGEVEGMHVCDNLGEHMIGNVYAKYADEEEADEARQALNGRFYAGRVLEVEFSPVTDFREARCRQYDEGQCTYGPYCNFLHVKTISRALRRDLERQARRRREPR 268
GGAEHLARIHGTEED+VNCPFYFKIGACRHG+RCSR HNKP FSQT+L+ HMY+NP S + A G +Q +D DFEDF+EEV+EEL KFG+VE +++CDNLG+H++GNVY KY DEE A A+++L GRFYAGR L EFSPVTDFREARCRQ+DEG C G YCNF+HVKT+SR+++R+LER R + PR
Sbjct: 49 GGAEHLARIHGTEEDRVNCPFYFKIGACRHGDRCSRLHNKPVFSQTILVSHMYQNPLSQII---------AQNGDPSGLDQKKVDEDFEDFYEEVFEELCKFGKVEELNICDNLGDHLVGNVYVKYEDEEHAAAAQKSLYGRFYAGRPLVCEFSPVTDFREARCRQFDEGTCNRGGYCNFMHVKTVSRSMQRELERLYNRYKPPR 244
BLAST of EWM26330.1 vs. NCBI_GenBank
Match: gi|676383391|ref|XP_009034974.1| (hypothetical protein AURANDRAFT_14519, partial [Aureococcus anophagefferens] >gi|323454278|gb|EGB10148.1| hypothetical protein AURANDRAFT_14519, partial [Aureococcus anophagefferens]) HSP 1 Score: 271.552 bits (693), Expect = 9.447e-88 Identity = 126/193 (65.28%), Postives = 157/193 (81.35%), Query Frame = 0
Query: 67 AEHLARIHGTEEDKVNCPFYFKIGACRHGERCSRKHNKPPFSQTLLLKHMYKNPASALFTAPARGERAAPQGANDATNQAGLDDFEDFFEEVYEELAKFGEVEGMHVCDNLGEHMIGNVYAKYADEEEADEARQALNGRFYAGRVLEVEFSPVTDFREARCRQYDEGQCTYGPYCNFLHVKTISRALRRDLER 259
A HLARIHGTEEDKVNCPFYFKIGACRHG+RCSR+H+KPPFSQT++++HMY+NPAS + A + P+ + +F+DF+EEVY+ELAK+GE+E ++VC+NLG+HM+GNVYAK+ADEE D + +AL GRFYAGR L EFSPVTDFREARCRQYDE CT G YCNF+H++T SR+LRRDLE+
Sbjct: 1 ATHLARIHGTEEDKVNCPFYFKIGACRHGDRCSRQHHKPPFSQTMIVQHMYQNPASQIAAAGGDPSQLDPKKVQE--------EFDDFYEEVYDELAKYGEIEELNVCENLGDHMVGNVYAKFADEEHTDASLKALFGRFYAGRPLVCEFSPVTDFREARCRQYDEAVCTRGGYCNFMHIRTPSRSLRRDLEK 185
BLAST of EWM26330.1 vs. NCBI_GenBank
Match: gi|301115075|ref|XP_002999307.1| (splicing factor U2AF 35 kDa subunit [Phytophthora infestans T30-4] >gi|262111401|gb|EEY69453.1| splicing factor U2AF 35 kDa subunit [Phytophthora infestans T30-4]) HSP 1 Score: 274.633 bits (701), Expect = 1.141e-86 Identity = 130/203 (64.04%), Postives = 160/203 (78.82%), Query Frame = 0
Query: 62 NSKGGAEHLARIHGTEEDKVNCPFYFKIGACRHGERCSRKHNKPPFSQTLLLKHMYKNPASALFTAPARGERAAPQGANDATNQAGLD-DFEDFFEEVYEELAKFGEVEGMHVCDNLGEHMIGNVYAKYADEEEADEARQALNGRFYAGRVLEVEFSPVTDFREARCRQYDEGQCTYGPYCNFLHVKTISRALRRDLERQARR 263
S GGAEHLARIHGTEED+VNCPFYFKIGACRHG+RCSR HNKP FSQT+L+ HMY+NP + + A G + +Q +D DFEDF+EEV+EEL KFG+VE +++CDNLG+H++GNVYAKY DEE A A+++L GRFYAGR L EFSPVTDFREARCRQ+DEG C G YCNF+H+KT+SR+++R+LER R
Sbjct: 52 QSGGGAEHLARIHGTEEDRVNCPFYFKIGACRHGDRCSRLHNKPVFSQTILVSHMYQNPIAQVI---------AQNGDPASLDQRQVDEDFEDFYEEVFEELCKFGKVEELNICDNLGDHLVGNVYAKYEDEEHAAAAQKSLYGRFYAGRPLVCEFSPVTDFREARCRQFDEGTCNRGGYCNFMHIKTVSRSMQRELERMFNR 245
BLAST of EWM26330.1 vs. NCBI_GenBank
Match: gi|675167035|ref|XP_008892402.1| (hypothetical protein PPTG_02849 [Phytophthora parasitica INRA-310] >gi|675167037|ref|XP_008892403.1| hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|566026542|gb|ETI49453.1| hypothetical protein F443_06761 [Phytophthora parasitica P1569] >gi|566026543|gb|ETI49454.1| hypothetical protein, variant [Phytophthora parasitica P1569] >gi|567963838|gb|ETK89331.1| hypothetical protein L915_06634 [Phytophthora parasitica] >gi|567963839|gb|ETK89332.1| hypothetical protein, variant [Phytophthora parasitica] >gi|567992466|gb|ETL42656.1| hypothetical protein L916_06573 [Phytophthora parasitica] >gi|567992467|gb|ETL42657.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568021738|gb|ETL95821.1| hypothetical protein L917_06444 [Phytophthora parasitica] >gi|568021739|gb|ETL95822.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568108584|gb|ETN23208.1| hypothetical protein PPTG_02849 [Phytophthora parasitica INRA-310] >gi|568108585|gb|ETN23209.1| hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|570330240|gb|ETO78188.1| hypothetical protein F444_06828 [Phytophthora parasitica P1976] >gi|570330241|gb|ETO78189.1| hypothetical protein, variant [Phytophthora parasitica P1976] >gi|570953969|gb|ETP19226.1| hypothetical protein F441_06764 [Phytophthora parasitica CJ01A1] >gi|570953970|gb|ETP19227.1| hypothetical protein, variant [Phytophthora parasitica CJ01A1] >gi|970630389|gb|KUF77349.1| Splicing factor U2AF 35 kDa subunit [Phytophthora nicotianae] >gi|970662902|gb|KUG00216.1| Splicing factor U2AF 35 kDa subunit [Phytophthora nicotianae]) HSP 1 Score: 272.707 bits (696), Expect = 5.673e-86 Identity = 129/199 (64.82%), Postives = 159/199 (79.90%), Query Frame = 0
Query: 62 NSKGGAEHLARIHGTEEDKVNCPFYFKIGACRHGERCSRKHNKPPFSQTLLLKHMYKNPASALFTAPARGERAAPQGANDATNQAGLD-DFEDFFEEVYEELAKFGEVEGMHVCDNLGEHMIGNVYAKYADEEEADEARQALNGRFYAGRVLEVEFSPVTDFREARCRQYDEGQCTYGPYCNFLHVKTISRALRRDLER 259
S GGAEHLARIHGTEED+VNCPFYFKIGACRHG+RCSR HNKP FSQT+L+ HMY+NP + + A G + +Q +D DFEDF+EEV+EEL KFG++E +++CDNLG+H++GNVYAKY DEE A A++AL GRFYAGR L EFSPVTDFREARCRQ+DEG C G YCNF+H+KT+SR+++R+LER
Sbjct: 52 QSGGGAEHLARIHGTEEDRVNCPFYFKIGACRHGDRCSRLHNKPVFSQTILVSHMYQNPIAQVI---------AQNGDPASLDQRQVDEDFEDFYEEVFEELCKFGKLEELNICDNLGDHLVGNVYAKYEDEEHAAAAQKALYGRFYAGRPLVCEFSPVTDFREARCRQFDEGTCNRGGYCNFMHIKTVSRSMQRELER 241
BLAST of EWM26330.1 vs. NCBI_GenBank
Match: gi|568052216|gb|ETM49098.1| (hypothetical protein L914_06545 [Phytophthora parasitica] >gi|568052217|gb|ETM49099.1| hypothetical protein, variant [Phytophthora parasitica] >gi|570988850|gb|ETP47155.1| hypothetical protein F442_06797 [Phytophthora parasitica P10297] >gi|570988851|gb|ETP47156.1| hypothetical protein, variant [Phytophthora parasitica P10297]) HSP 1 Score: 272.707 bits (696), Expect = 5.989e-86 Identity = 129/199 (64.82%), Postives = 159/199 (79.90%), Query Frame = 0
Query: 62 NSKGGAEHLARIHGTEEDKVNCPFYFKIGACRHGERCSRKHNKPPFSQTLLLKHMYKNPASALFTAPARGERAAPQGANDATNQAGLD-DFEDFFEEVYEELAKFGEVEGMHVCDNLGEHMIGNVYAKYADEEEADEARQALNGRFYAGRVLEVEFSPVTDFREARCRQYDEGQCTYGPYCNFLHVKTISRALRRDLER 259
S GGAEHLARIHGTEED+VNCPFYFKIGACRHG+RCSR HNKP FSQT+L+ HMY+NP + + A G + +Q +D DFEDF+EEV+EEL KFG++E +++CDNLG+H++GNVYAKY DEE A A++AL GRFYAGR L EFSPVTDFREARCRQ+DEG C G YCNF+H+KT+SR+++R+LER
Sbjct: 52 QSGGGAEHLARIHGTEEDRVNCPFYFKIGACRHGDRCSRLHNKPVFSQTILVSHMYQNPIAQVI---------AQNGDPASLDQRQVDEDFEDFYEEVFEELCKFGKLEELNICDNLGDHLVGNVYAKYEDEEHAAAAQKALYGRFYAGRPLVCEFSPVTDFREARCRQFDEGTCNRGGYCNFMHIKTVSRSMQRELER 241
BLAST of EWM26330.1 vs. NCBI_GenBank
Match: gi|298714129|emb|CBJ27310.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 265.388 bits (677), Expect = 1.806e-81 Identity = 129/215 (60.00%), Postives = 164/215 (76.28%), Query Frame = 0
Query: 53 RNWRDRH--LGNSKGGAEHLARIHGTEEDKVNCPFYFKIGACRHGERCSRKHNKPPFSQTLLLKHMYKNPASALFTA---PARGERAAPQGANDATNQAGLDDFEDFFEEVYEELAKFGEVEGMHVCDNLGEHMIGNVYAKYADEEEADEARQALNGRFYAGRVLEVEFSPVTDFREARCRQYDEGQCTYGPYCNFLHVKTISRALRRDLERQAR 262
RN RDR+ G+++GGAEHLARIHGTEEDKVNCPF++KIGACRHG+RCSR+H+KPPFSQT+L++++Y+NP SA+ A P++ + Q DDFEDFFEEVY+EL+KFGE+ M+VCDNLG+H+IGNVY K+ DEE+AD A + L GR+YA R + EFSPVTDFREARCRQ+DEG C G CNF+HVK + R + LE+ R
Sbjct: 45 RNPRDRNGMSGSARGGAEHLARIHGTEEDKVNCPFFYKIGACRHGDRCSRQHHKPPFSQTILVQNLYQNPVSAVMAAGGDPSQLPKDHVQ-----------DDFEDFFEEVYQELSKFGEISEMNVCDNLGDHLIGNVYVKFLDEEDADSALKGLMGRWYASRPIMCEFSPVTDFREARCRQFDEGTCNRGGQCNFMHVKPVPRLVMSYLEKLLR 248
BLAST of EWM26330.1 vs. NCBI_GenBank
Match: gi|813157403|ref|XP_012202050.1| (hypothetical protein SPRG_07523 [Saprolegnia parasitica CBS 223.65] >gi|641533280|gb|KDO27275.1| hypothetical protein SPRG_07523 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 245.743 bits (626), Expect = 1.035e-76 Identity = 126/208 (60.58%), Postives = 154/208 (74.04%), Query Frame = 0
Query: 65 GGAEHLARIHGTEEDKVNCPFYFKIGACRHGERCSRKHNKPPFSQTLLLKHMYKNPASALFTAPARGERAAPQGANDATNQAGLDDFEDFFEEVYEELAKFGEVEGMHVCDNLGEHMIGNVYAKYADEEEADEARQALNGRFYAGRVLEVEFSPVTDFREARCRQYDEGQCTYGPYCNFLHVKTISRALRRDLERQ----ARRRREPR 268
GGAEHLARIHGTEED+VNCPFYFKIGACRHG+RCSR HNKP FSQT+L+KHMY+NP S + A P + T +DF EEVYEEL KFG+V+ ++VCDNLG+H++GNVYAK+ DEE A A++AL GRFY GR L EFSPVTDFREARCRQ+DEG C G YCNF+H+K +S A+ +LER A ++ +P+
Sbjct: 50 GGAEHLARIHGTEEDRVNCPFYFKIGACRHGDRCSRLHNKPVFSQTILVKHMYQNPLSVIIAA-----NGDPSQLDQKTVDEDFEDFF---EEVYEELCKFGKVDELNVCDNLGDHLVGNVYAKFDDEECAAAAQKALYGRFYGGRPLICEFSPVTDFREARCRQFDEGTCNRGGYCNFMHIKMVSHAMMIELERHYNPSAPKKSQPQ 249 The following BLAST results are available for this feature:
BLAST of EWM26330.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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