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Properties
| Property Name | Value |
|---|
| Product | short-chain dehydrogenase reductase sdr |
| Orig transcript id | gnl|cribi|Naga_100003g46.1825.mrna |
| Orig protein id | gnl|cribi|Naga_100003g46.1825 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002455.1 | supercontig | CM002455.1:1079726..1080799 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna436 ID=rna436|Name=rna436|organism=Nannochloropsis gaditana|type=mRNA|length=2213bp
TGGGTTTCATCGTTTTTACTGTGGTGTGAGTACAGGATAAAACAGAATAT
GTTTTAGCGCAGTCCTTGCTAACGCAATGTGTGGTTTTCGAGACAGGCTT
TGGACTGACGTTTAACCTCCTGGCTGGACATGGTGGAGGAGCTCCAAGAC
GCCTCCCAAGCACGGGCGCCGATAGTCGACACTTTAAAAACTGCTTATGG
GGCGAAACGCGCATGAAACGGAATGCCGTTTGAAGCGGCTGCATTTTTTG
GCGCTTTGTTGCCTTTCGGTAATCGCGGCTTGTCGGGGGGCGATGGTGTG
GCATAGCCCCTGCAGGATGTCTTTATCAGGAGATTATACACCCAGAGCCT
GGTGGAAAAATCCTACTGTTCCTATGACGCGCTTTGTAGCCCGACTTGCT
TACGATGGGACGCACTTCAATGGTTGGCAATTCCAAGTGAAGAGTCGAAC
GGTGCAACTCGAGGTCGAACGCGCCATCAACTCAACCCTCGCCGCCTGCC
CGGACTCCGACTTGCTTGATAAGGTGTGCATTCGGGCCGTCGCAGCCGGT
CGAACGGATGCTGGTGTCCATGCACGAGGACAGGTCATCCATTTTGACTA
CCCGGCGGTGGCTGCAGGACGGTTTACTGTTCAAGAATTCGAAACGAAGC
TGAACGAGGGACTGGTCTCAGACGTCCGGCTCTGGAACGTGTCGCACGCC
CCTCCTCCCCGAGAGAAAAACCTGGCGGTCCAAGGAGATTGGCACGCTAT
GTACAACAGCCGTTCAAAGCTCTACACTTATCGGTTCTCCACCCGTGCTG
TGGCTGACCCGCTGCACCGGAATTACTGTTGCGCTGTCCCCCGTGGCGAG
GCGCTAGACCTACGCAAATTGGCTGAGTTGACTAGCATTTTCGAGGGAAA
GCATGATTATCAGAATTTCGCTAATCGCTTGCAACACAAGCGGCGAATGA
GCAAAAGGGGGGAAGAATTTTCAACCGTAAGACACGTGCGGTCCGTAGAG
CTAGTTTCGGAGGCGCCAGAGGAATACGCGATCCATGTGCTTTTGGATGG
AGCACTGCAACGAATGGTCAGGAATATGGTGGGAGGACTGTGGGCCGTGG
CACGGGGAGACATGAGTGAAGCGGAGCTGCGAAGGGCATTGGACGGGCCT
TTGTATGCTAAGGGAAGGAGCCCGATCAGAGCAGCACCGGCGCACGGATT
GACGCTGGAATGGGTTTACTACGACGATTTCTGAGGTGATCACGGCAATA
AAAGAGATTCACTCAAGGGTTTACGCGATAAAATTGGAAATTTCAGAGGG
CATGGATCGCTGGTGGGATGGGTGCTCCTTGAGGGGCGCAGAAGGGTGAC
GTCAGGAGGCGGACGATGGAATGTTCGAAAGGATCTACGGCTTATTCTGG
TACACGGACCTTGCTGGACCAAATCTAGAATACAGCGGTGGCATGCCAAA
CTATGGAGTGGGAAGGCAGGTCCTCGCTGCATGGGCTACCTGCCCGACCA
ATTCTCGACAGACGCCTGTCGTCGCCGTCCATGGACACGCCTTGCCTGCC
ATTCGTCTTACCACCACAACACGTACACCGGCCTCAAGAGCGATAGCCCC
CTCAATAATACAGAACAATCATATCTTCCTGTAAGGCGCGGGACTCAGAT
ACCCTCACGAGATCACTGCCAGCGCATTCCCCTGCCGCAAGCTCTCGCAT
AGTAGTTTCCCCGTCCTCGGATCTACAAGGGCATCGCTTCTATAGCGTTA
CAAACGTTGAATGTGTGACATGCCCTAAACACTTTGTCTGAAAGAACTGC
CCATGGATCCTAATAGATAAATTAATTGACACTTGGTCTGAAAGAACTGC
CCATGGATCCTAATAGATACATTAATTGAGTGACGACCCGTCAAGAGCTA
GAGAATACTTCGCTTCGAGCTTGATGCTCCTCAACAACAGTACGCAGTAC
TTATGAGATATCGAATGATACGCTTATCCTAAATCAATAAAGTACACGTA
TGATACTAGCAATGTGTGAGCACGATGCCTGAGCAAGAGCTTTGCCCAGG
CTTGTGTTTAGATTATCCATTATCACAAGAGAGTAGACAAAGGTGCTTCA
ATTTATAATTTGTTTCGAACTTTTGTGCAACTGCTTTATTTCCCTGCCCC
TGCAGTCAACATTTTTGCCAGGTCTCTAGAATTCTGCAATATTCGCTCCC
GCAAGCTGTCACA back to topprotein sequence of rna436 >rna436-protein ID=rna436-protein|Name=rna436|organism=Nannochloropsis gaditana|type=polypeptide|length=325bp
MKPTSLLVPSSLLLLSSNLFVSSFVIQLHTSSIIGVSAKSSSTGSSSRSS
TRMLEKIYIVTGSTDGIGQHTASNLINTPDAKLLVHGRNPAKVAQTVQQL
KSVNPGDIDGVVADLASFQDIRRLAKDLEEKIEAASPDAPVVLINNAGVF
ETRRKESPEGLEMTFAINVAAPFLLTGLLLPLLRRRKNSRIINISSISQG
GSIPWDDLQLALPGAYTDHRAYSLSKLCMAMLSMEQSSRFGSAEFPIVCC
DPGTVNTKMLEAGWGMYGVDVSAANDETLLALAPSLDNGSYFVGRMARKA
NAEAYDPKSRARLWQYLEEVTGFAY back to topmRNA from alignment at CM002455.1:1079726..1080799+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna436 ID=rna436|Name=rna436|organism=Nannochloropsis gaditana|type=mRNA|length=1074bp|location=Sequence derived from alignment at CM002455.1:1079726..1080799+ (Nannochloropsis gaditana)
GTACTCACACCACAGTAAAAACGATGAAACCCACCAGTTTGCTCGTCCCG
AGCTCGCTCCTGCTTTTGAGCAGCAATCTCTTCGTGTCCTCTTTCGTCAT
TCAATTGCACACTTCATCGATAATAGGTGTAAGCGCTAAGTCCTCTTCCA
CCGGTAgtagcagcaggagcagTACAAGGATGCTTGAGAAGATATACATT
GTAACGGGCTCCACTGATGGGATAGGCCAGCATACAGCCAGTAATTTAAT
CAATACCCCAGATGCCAAACTCTTGGTACACGGCCGCAATCCTGCCAAGG
TTGCTCAGACCGTACAACAGTTGAAATCAGTAAACCCCGGGGATATAGAT
GGCGTCGTGGCCGATCTGGCTTCATTTCAGGACATTCGACGACTGGCCAA
AgatttggaggagaaaatagAAGCCGCATCTCCCGATGCCCCCGTGGTGC
TGATTAACAATGCGGGTGTGTTCGAGACCAGGCGTAAAGAAAGCCCGGAA
GGATTGGAAATGACCTTCGCCATCAACGTTGCTGCTCCATTTCTATTGAc
tggccttcttcttcctttacttcggaggagaaagaacaGTCGGATAATCA
acatctcctccatttcccaaGGGGGGAGCATACCATGGGACGACCTACAG
CTCGCACTTCCCGGGGCCTATACCGACCATCGAGCCTACTCGCTCAGCAA
ACTATGCATGGCTATGCTCAGTATGGAGCAGAGCAGCCGTTTCGGTTCCG
CTGAGTTTCCAATTGTGTGCTGCGACCCCGGTACGGTAAACACGAAGATG
CTGGAAGCGGGGTGGGGGATGTACGGGGTGGACGTGTCGGCTGCCAATGA
CGAGAccctcctggccctcgccCCATCCCTCGACAACGGGTCTTATTTTG
TCGGCAGGATGGCACGGAAAGCGAACGCAGAGGCTTACGACCCAAAGTCA
CGGGCACGGTTGTGGCAatacctggaggaggtgacgggaTTCGCGTACTG
AGACATGTCATGTCGACGCAAGcgcgaagagggaaggaatggaacaACGA
ATTTTTGTGACAGGGCGGGAATTG back to topCoding sequence (CDS) from alignment at CM002455.1:1079726..1080799+ >rna436 ID=rna436|Name=rna436|organism=Nannochloropsis gaditana|type=CDS|length=978bp|location=Sequence derived from alignment at CM002455.1:1079726..1080799+ (Nannochloropsis gaditana)
ATGAAACCCACCAGTTTGCTCGTCCCGAGCTCGCTCCTGCTTTTGAGCAG
CAATCTCTTCGTGTCCTCTTTCGTCATTCAATTGCACACTTCATCGATAA
TAGGTGTAAGCGCTAAGTCCTCTTCCACCGGTAgtagcagcaggagcagT
ACAAGGATGCTTGAGAAGATATACATTGTAACGGGCTCCACTGATGGGAT
AGGCCAGCATACAGCCAGTAATTTAATCAATACCCCAGATGCCAAACTCT
TGGTACACGGCCGCAATCCTGCCAAGGTTGCTCAGACCGTACAACAGTTG
AAATCAGTAAACCCCGGGGATATAGATGGCGTCGTGGCCGATCTGGCTTC
ATTTCAGGACATTCGACGACTGGCCAAAgatttggaggagaaaatagAAG
CCGCATCTCCCGATGCCCCCGTGGTGCTGATTAACAATGCGGGTGTGTTC
GAGACCAGGCGTAAAGAAAGCCCGGAAGGATTGGAAATGACCTTCGCCAT
CAACGTTGCTGCTCCATTTCTATTGActggccttcttcttcctttacttc
ggaggagaaagaacaGTCGGATAATCAacatctcctccatttcccaaGGG
GGGAGCATACCATGGGACGACCTACAGCTCGCACTTCCCGGGGCCTATAC
CGACCATCGAGCCTACTCGCTCAGCAAACTATGCATGGCTATGCTCAGTA
TGGAGCAGAGCAGCCGTTTCGGTTCCGCTGAGTTTCCAATTGTGTGCTGC
GACCCCGGTACGGTAAACACGAAGATGCTGGAAGCGGGGTGGGGGATGTA
CGGGGTGGACGTGTCGGCTGCCAATGACGAGAccctcctggccctcgccC
CATCCCTCGACAACGGGTCTTATTTTGTCGGCAGGATGGCACGGAAAGCG
AACGCAGAGGCTTACGACCCAAAGTCACGGGCACGGTTGTGGCAatacct
ggaggaggtgacgggaTTCGCGTACTGA back to top
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