EWM30308.1, cds436 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM30308.1 vs. NCBI_GenBank
Match: gi|585112967|gb|EWM30308.1| (short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana]) HSP 1 Score: 666.381 bits (1718), Expect = 0.000e+0 Identity = 325/325 (100.00%), Postives = 325/325 (100.00%), Query Frame = 0
Query: 1 MKPTSLLVPSSLLLLSSNLFVSSFVIQLHTSSIIGVSAKSSSTGSSSRSSTRMLEKIYIVTGSTDGIGQHTASNLINTPDAKLLVHGRNPAKVAQTVQQLKSVNPGDIDGVVADLASFQDIRRLAKDLEEKIEAASPDAPVVLINNAGVFETRRKESPEGLEMTFAINVAAPFLLTGLLLPLLRRRKNSRIINISSISQGGSIPWDDLQLALPGAYTDHRAYSLSKLCMAMLSMEQSSRFGSAEFPIVCCDPGTVNTKMLEAGWGMYGVDVSAANDETLLALAPSLDNGSYFVGRMARKANAEAYDPKSRARLWQYLEEVTGFAY 325
MKPTSLLVPSSLLLLSSNLFVSSFVIQLHTSSIIGVSAKSSSTGSSSRSSTRMLEKIYIVTGSTDGIGQHTASNLINTPDAKLLVHGRNPAKVAQTVQQLKSVNPGDIDGVVADLASFQDIRRLAKDLEEKIEAASPDAPVVLINNAGVFETRRKESPEGLEMTFAINVAAPFLLTGLLLPLLRRRKNSRIINISSISQGGSIPWDDLQLALPGAYTDHRAYSLSKLCMAMLSMEQSSRFGSAEFPIVCCDPGTVNTKMLEAGWGMYGVDVSAANDETLLALAPSLDNGSYFVGRMARKANAEAYDPKSRARLWQYLEEVTGFAY
Sbjct: 1 MKPTSLLVPSSLLLLSSNLFVSSFVIQLHTSSIIGVSAKSSSTGSSSRSSTRMLEKIYIVTGSTDGIGQHTASNLINTPDAKLLVHGRNPAKVAQTVQQLKSVNPGDIDGVVADLASFQDIRRLAKDLEEKIEAASPDAPVVLINNAGVFETRRKESPEGLEMTFAINVAAPFLLTGLLLPLLRRRKNSRIINISSISQGGSIPWDDLQLALPGAYTDHRAYSLSKLCMAMLSMEQSSRFGSAEFPIVCCDPGTVNTKMLEAGWGMYGVDVSAANDETLLALAPSLDNGSYFVGRMARKANAEAYDPKSRARLWQYLEEVTGFAY 325
BLAST of EWM30308.1 vs. NCBI_GenBank
Match: gi|551678593|ref|XP_005842049.1| (hypothetical protein GUITHDRAFT_63155 [Guillardia theta CCMP2712] >gi|428186218|gb|EKX55069.1| hypothetical protein GUITHDRAFT_63155 [Guillardia theta CCMP2712]) HSP 1 Score: 209.534 bits (532), Expect = 1.140e-62 Identity = 122/275 (44.36%), Postives = 165/275 (60.00%), Query Frame = 0
Query: 54 LEKIYIVTGSTDGIGQHTASNLINTPDAKLLVHGRNPAKVAQTVQQLKSVNP-GDIDGVVADLASFQDIRRLAKDLEEKIEAASPDAPVVLINNAGVFETRRKESPEGLEMTFAINVAAPFLLTGLLLPLLRRRKNSRIINISSISQGGSIPWDDLQLALPGAYTDHRAYSLSKLCMAMLSMEQSSRFGSAEFPIVCC---DPGTVNTKMLEAGWGMYGVDVSAANDETLLALAPSL--DNGSYFVGRMARKANAEAYDPKSRARLWQYLEEVTG 322
L KI +VTGSTDGIG+HTA L ++++HGRNP ++ + +KS P + AD A D+R+L ++ K + VLINNAGV+E K++ +G EMTF +NV A FLLT LL+ + + + RII SSISQG SI +D+L + ++ H +YSLSKLC AM ++E + R P V DPGTVNTKML AGWGM G+DV AN+E LA SL +G YFVG KA+ YD R +LW+ +E++TG
Sbjct: 5 LNKIALVTGSTDGIGRHTALKLAQ-EGYEVIIHGRNPKRIEDALAFIKSKCPNAHLQSFQADFARLDDVRKLGNEIASKYQCID-----VLINNAGVYEESMKKTVDGFEMTFQVNVLAGFLLTTLLMDTVAKAEEPRIIITSSISQGSSIDFDNLN--MEKGFSSHGSYSLSKLCNAMHAIELAERM-KKRHPHVTVNTLDPGTVNTKMLLAGWGMCGIDVERANNEFNLATDASLKGKSGLYFVGGRETKASRPCYDKDQRLKLWKRMEDMTG 270
BLAST of EWM30308.1 vs. NCBI_GenBank
Match: gi|873235131|emb|CEM00874.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 201.83 bits (512), Expect = 2.464e-59 Identity = 121/279 (43.37%), Postives = 170/279 (60.93%), Query Frame = 0
Query: 56 KIYIVTGSTDGIGQHTASNLIN-TPDAKLLVHGRNPAKV----AQTVQQLKSVNPGDIDGVVADLASFQDIRRLAKDLEEKIEAASPDAPVVLINNAGVFETRRKESPEGLEMTFAINVAAPFLLTGLLLPLLRRRKNSRIINISSISQGGSIPWDDLQLALPGAYTDHRAYSLSKLCMAMLSMEQSSRFGSAEFPIVCCDPGTVNTKMLEAGWGMYGVDVSAANDETLLALA--PSL--DNGSYFVGRMARKANAEAYDPKSRARLWQYLEEVTGFAY 325
KIY++TGSTDGIG+HTA L D +++HGR+P ++ A+ V+ K++N I +ADL+ +++ LA ++++ VLINNAGVFE RR+E+P+ +E+TFA+NVAAP++LT LL + RII SSISQG I ++LQL Y+DH AYSLSKLC +L++E + R S DPGTVNTKML AGWG G+DVS A++ LA + P + + G+YFV R + A D RA W +E++TG Y
Sbjct: 43 KIYLITGSTDGIGRHTAHRLAAANKDNTVIIHGRSPERLEAAKAELVRATKNIN---IFAYLADLSVMRNVEALASEIKKHHPRID-----VLINNAGVFEERRQETPDAMELTFAVNVAAPYVLTRHLLDCIPD-NTGRIIITSSISQGSRIDLNNLQLNT--GYSDHAAYSLSKLCDVLLTVEIADRLKSRGIVCHTQDPGTVNTKMLLAGWGPCGIDVSVADNTFWLATSNDPHVVKETGNYFVSRRLSTPSGPAGDGSVRAAFWAQMEQLTGVKY 310
BLAST of EWM30308.1 vs. NCBI_GenBank
Match: gi|780086869|ref|XP_011673520.1| (PREDICTED: LOW QUALITY PROTEIN: retinol dehydrogenase 13-like [Strongylocentrotus purpuratus]) HSP 1 Score: 198.749 bits (504), Expect = 1.583e-58 Identity = 123/276 (44.57%), Postives = 167/276 (60.51%), Query Frame = 0
Query: 53 MLEKIYIVTGSTDGIGQHTASNLINTPDAKLLVHGRNPAKVAQTVQQLKSVNPGD-IDGVVADLASFQDIRRLAKDLEEKIEAASPDAPVVLINNAGVFETRRKESPEGLEMTFAINVAAPFLLTGLLLPLLRRRKNSRIINISSISQGGSIPWDDLQLALPGAYTDHRAYSLSKLCMAMLSMEQSSRFGSAEFPIVCCDPGTVNTKMLEAGWGMYGVDVSAANDETLLALAPSLDN--GSYFVGRMARKANAEAYDPKSRARLWQYLEEVTGFAY 325
M +I++VTG+T+GIGQ TA L T +LVHGR A+V TV +K + I G +ADLA +IRRL+ +L AS VLINNAGV+E +R+ES +G E+TFA+NV APFLLT LLL LL+ SRI+N+SSISQ + D+LQL D +AY SKLC M +++ + RF + C DPGTVNT+ML WG G+ A++E LA ++ G YFV +A+A AYD + R +LW++L ++TG Y
Sbjct: 1 MNGRIFLVTGATNGIGQDTALQLSKTG-GTVLVHGRALARVEATVADIKKATGNENIKGYIADLACLANIRRLSDELH-----ASQKHIDVLINNAGVYEKKRQESNDGYELTFAVNVMAPFLLTSLLLDLLKAGNKSRIVNVSSISQSSFLDLDNLQLKHDYGKGD-KAYEQSKLCDIMFTIDMAERFRKDGITVNCLDPGTVNTQMLLKVWGAIGIPTDEADNEFHLATDAKFEDVTGEYFVDMRKTRASAVAYDNQLRGKLWKHLVDITGAQY 269
BLAST of EWM30308.1 vs. NCBI_GenBank
Match: gi|299116526|emb|CBN74714.1| (oxidoreductase, short chain dehydrogenase/reductase family [Ectocarpus siliculosus]) HSP 1 Score: 196.052 bits (497), Expect = 4.823e-57 Identity = 120/292 (41.10%), Postives = 174/292 (59.59%), Query Frame = 0
Query: 42 STGSSSRSSTRMLEKIYIVTGSTDGIGQHTASNLINTPDAKLLVHGRNPAKVAQTVQQLKSVNPGDIDGVVADLASFQDIRRLAKD---LEEKIEAASPDAPVVLINNAGVFETRRKESPEGLEMTFAINVAAPFLLTGLLLPLLRRR-KNSRIINISSISQGGSIPWDDLQLALPGAYTDHRAYSLSKLCMAMLSMEQSSRFGSAEFPIVC--CDPGTVNTKMLEAGWGMYGVDVSAANDETLLALAPSLDN--GSYFVGRMARKANAEAYDPKSRARLWQYLEEVTGFAY 325
+T S+ + R+ +K+Y+VTGSTDGIG+HTAS L A +LVHGR + V + V+ + +VADL+S + L + L ++++ L+NNAGVFE + S +GLE TFA+NV AP+++TG LL LL + R++N++S+S S+ +D+LQ G Y+DH +YSLSKL M + E + R A I C DPGTVNTKML AGWGM G+ V +AND+ LA + + + G Y+V R A D ++ RLW+ LEE++GF+Y
Sbjct: 37 TTKMSAAVTGRLADKVYLVTGSTDGIGKHTASRLAE-EGATVLVHGRRESAVREAVEHVGGGKGKVEG-IVADLSSLRGANHLCDEVLRLTDRLDC--------LLNNAGVFEADFRHSDDGLEYTFAVNVLAPYVITGRLLDLLAKAPGGGRVVNVASLSASYSLDFDNLQFE-KGGYSDHASYSLSKLLDIMFNAELARR---APKGITCNSLDPGTVNTKMLRAGWGMGGIPVKSANDQFYLATSDDVTDSSGEYYVSRRVTTPPPPAEDDEACRRLWRVLEELSGFSY 314
BLAST of EWM30308.1 vs. NCBI_GenBank
Match: gi|1210519898|dbj|GAX21327.1| (hypothetical protein FisN_1Lh162 [Fistulifera solaris]) HSP 1 Score: 193.741 bits (491), Expect = 3.239e-56 Identity = 116/282 (41.13%), Postives = 168/282 (59.57%), Query Frame = 0
Query: 53 MLEKIYIVTGSTDGIGQHTASNLINTPDAKLLVHGRNPAKVAQTVQQLKSVNPGDIDGVV-----ADLASFQDIRRLAKDLEEKIEAASPDAPVVLINNAGVFETRRKESPEGLEMTFAINVAAPFLLTGLLLPLL------RRRKNSRIINISSISQGGSI-PWDDLQLALPGAYTDHRAYSLSKLCMAMLSMEQSSRFGSAEFPIVCCDPGTVNTKMLEAGWGMYGVDVSAANDETLLALAPSLDN--GSYFVGRMARKANAEAYDPKSRARLWQYLEEV 320
++ + +VTGSTDGIG TA +L +L+HGR+ ++ V+ +++ G V ADL++ Q RRL + +E+ + + A +++NNAGVF + + +GLE+TFA+NV APF++T LLLP L + SRI+ SS+SQ +I WDD+ +Y+ H AYS SKL AML+ME + R S C DPGTVNTKML AGWG G++V A DET L +P +++ G YFV + AR+A++ AYD RAR+W L E+
Sbjct: 9 VVNRAVLVTGSTDGIGITTAKHLAK-KGYDVLIHGRDSQRIEAAVKAVQAF--GSQGNKVLPLPPADLSTVQGCRRLVQQVEQLCDKENL-ALSIIMNNAGVFAEKHVLTEDGLELTFAVNVMAPFVITSLLLPRLLYESSTSKTTASRIVIASSLSQCAAIRSWDDIHYR-NRSYSAHAAYSESKLLDAMLTMEFAKRLPSQRITCNCLDPGTVNTKMLLAGWGRIGIEVEDALDETWLCSSPQVEHVTGKYFVNQQARRASSSAYDENERARMWNLLGEI 285
BLAST of EWM30308.1 vs. NCBI_GenBank
Match: gi|449705225|gb|EMD45318.1| (oxidoreductase short chain dehydrogenase/reductase family protein [Entamoeba histolytica KU27]) HSP 1 Score: 190.274 bits (482), Expect = 3.350e-55 Identity = 113/274 (41.24%), Postives = 159/274 (58.03%), Query Frame = 0
Query: 55 EKIYIVTGSTDGIGQHTASNLINTPDAKLLVHGRNPAKVAQTVQQLKSVNP-GDIDGVVADLASFQDIRRLAKDLEEKIEAASPDAPVVLINNAGVFETRRKESPEGLEMTFAINVAAPFLLTGLLLPLLRRRKNSRIINISSISQGGSIPWDDLQLALPGAYTDHRAYSLSKLCMAMLSMEQSSRFGSAEFPIVCCDPGTVNTKMLEAGWGMYGVDVSAANDETLLALAPSLDN--GSYFVGRMARKANAEAYDPKSRARLWQYLEEVTGFAY 325
+K+ VTGSTDGIG TA+ L + K++VHGR KV + + ++S P D+D VV DL S + + + L K + +L+NNAGVF R++S +G EMT A+NV APF++T LLPL+R+ +NSR+I + SISQ + D ++ Y +RAY SKL + + E + R+ + I DPGTVNTKML WG G++V ANDE LA+ L G YFV ++ KA +AYD R +L+ LEE+TG Y
Sbjct: 6 KKVAFVTGSTDGIGLFTATKLAHDG-YKVIVHGRTQEKVEKAMGIIQSQIPEADLDFVVCDLQSIEKTKMMCDLLLSKYQRLD-----LLLNNAGVFLLERQDSVDGHEMTLAVNVLAPFIITFKLLPLIRKTQNSRVIEVGSISQPSYMDLDLIE--HKDNYDGYRAYDYSKLSVIAFTFELTERY--PDLWINTLDPGTVNTKMLLLSWGKCGIEVGEANDEYWLAINEDLQKVRGKYFVNKVEEKAEKQAYDLNFRKKLFLKLEEITGIKY 269
BLAST of EWM30308.1 vs. NCBI_GenBank
Match: gi|672806728|ref|XP_008858402.1| (oxidoreductase, short chain dehydrogenase/reductase family protein [Entamoeba nuttalli P19] >gi|407038685|gb|EKE39262.1| oxidoreductase, short chain dehydrogenase/reductase family protein [Entamoeba nuttalli P19]) HSP 1 Score: 189.504 bits (480), Expect = 5.438e-55 Identity = 113/274 (41.24%), Postives = 158/274 (57.66%), Query Frame = 0
Query: 55 EKIYIVTGSTDGIGQHTASNLINTPDAKLLVHGRNPAKVAQTVQQLKSVNP-GDIDGVVADLASFQDIRRLAKDLEEKIEAASPDAPVVLINNAGVFETRRKESPEGLEMTFAINVAAPFLLTGLLLPLLRRRKNSRIINISSISQGGSIPWDDLQLALPGAYTDHRAYSLSKLCMAMLSMEQSSRFGSAEFPIVCCDPGTVNTKMLEAGWGMYGVDVSAANDETLLALAPSLDN--GSYFVGRMARKANAEAYDPKSRARLWQYLEEVTGFAY 325
+K+ VTGSTDGIG TA+ L + K++VHGR KV + + ++S P D+D VV DL S + + + + K + +L+NNAGVF R+ES +G EMT A+NV APF++T LLPL+R+ +NSR+I + SISQ + D ++ Y +RAY SKL + + E + R+ + I DPGTVNTKML WG G++V ANDE LA L G YFV ++ KA +AYD R +L+ LEE+TG Y
Sbjct: 6 KKVAFVTGSTDGIGLFTATKLAHDG-YKVIVHGRTQDKVEKAMGSIQSQIPEADLDFVVCDLQSIEKTKMMCDLILSKYQRLD-----LLLNNAGVFLLERQESVDGHEMTLAVNVLAPFIITFKLLPLIRKTQNSRVIEVGSISQPSYMDLDLIE--HKDNYDGYRAYDYSKLSVIAFTFELTERY--PDLWINTLDPGTVNTKMLLLSWGKCGIEVGEANDEYWLATNEDLQKVRGKYFVNKVEEKAEKQAYDLNFRKKLFLKLEEITGIKY 269
BLAST of EWM30308.1 vs. NCBI_GenBank
Match: gi|67467650|ref|XP_649916.1| (oxidoreductase, short chain dehydrogenase/reductase family [Entamoeba histolytica HM-1:IMSS] >gi|56466443|gb|EAL44530.1| oxidoreductase, short chain dehydrogenase/reductase family [Entamoeba histolytica HM-1:IMSS] >gi|472465220|gb|EMS17863.1| oxidoreductase, short chain dehydrogenase/reductase family protein [Entamoeba histolytica HM-3:IMSS] >gi|480527634|gb|ENY65963.1| oxidoreductase, short chain dehydrogenase/reductase family protein, putative [Entamoeba histolytica HM-1:IMSS-A] >gi|1033416461|dbj|GAT98260.1| oxidoreductase short chain dehydrogenase reductase family [Entamoeba histolytica]) HSP 1 Score: 188.734 bits (478), Expect = 1.193e-54 Identity = 113/274 (41.24%), Postives = 158/274 (57.66%), Query Frame = 0
Query: 55 EKIYIVTGSTDGIGQHTASNLINTPDAKLLVHGRNPAKVAQTVQQLKSVNP-GDIDGVVADLASFQDIRRLAKDLEEKIEAASPDAPVVLINNAGVFETRRKESPEGLEMTFAINVAAPFLLTGLLLPLLRRRKNSRIINISSISQGGSIPWDDLQLALPGAYTDHRAYSLSKLCMAMLSMEQSSRFGSAEFPIVCCDPGTVNTKMLEAGWGMYGVDVSAANDETLLALAPSLDN--GSYFVGRMARKANAEAYDPKSRARLWQYLEEVTGFAY 325
+K+ VTGSTDGIG TA+ L + K++VHGR KV + + ++S P D+D VV DL S + + + L K + +L+NNAGVF R++S +G EMT A+NV APF++T LLPL+R+ +NSR+I + SISQ + D ++ Y +RAY SKL + + E + R+ + I DPGTVNTKML WG G++V ANDE LA L G YFV ++ KA +AYD R +L+ LEE+TG Y
Sbjct: 6 KKVAFVTGSTDGIGLFTATKLAHDG-YKVIVHGRTQEKVEKAMGIIQSQIPEADLDFVVCDLQSIEKTKMMCDLLLSKYQRLD-----LLLNNAGVFLLERQDSVDGHEMTLAVNVLAPFIITFKLLPLIRKTQNSRVIEVGSISQPSYMDLDLIE--HKDNYDGYRAYDYSKLSVIAFTFELTERY--PDLWINTLDPGTVNTKMLLLSWGKCGIEVGEANDEYWLATNEDLQKVRGKYFVNKVEEKAEKQAYDLNFRKKLFLKLEEITGIKY 269
BLAST of EWM30308.1 vs. NCBI_GenBank
Match: gi|291224445|ref|XP_002732216.1| (PREDICTED: dehydrogenase/reductase SDR family member on chromosome X-like [Saccoglossus kowalevskii]) HSP 1 Score: 188.348 bits (477), Expect = 2.316e-54 Identity = 114/275 (41.45%), Postives = 157/275 (57.09%), Query Frame = 0
Query: 56 KIYIVTGSTDGIGQHTASNLINTPDAKLLVHGRNPAKVAQTVQQLKS-VNPGDIDGVVADLASFQDIRRLAKDLEEKIEAASPDAPVVLINNAGVFETRRKESPEGLEMTFAINVAAPFLLTGLLLPLLRRRKNSRIINISSISQGGSIPWDDLQLALPGAYTDHRAYSLSKLCMAMLSMEQSSRFGSAEFPIVCCDPGTVNTKMLEAGW-GMYGVDVSAANDETLLALAPSLDN--GSYFVGRMARKANAE-AYDPKSRARLWQYLEEVTGFAY 325
K+Y+VTGSTDGIG+ TA L DA +L+HGR+ K + +LKS ID +ADL+SFQ IR L++ + +K D V+++NAGVFE +RKES +G E+TFA+NV APFLLT LL+ ++ + N RI+ +S +S SI DLQ L Y AY LSKLC M++ E + R DPG V+T +L AGW +G+ A+ LA + G YFV R +AE +YD R +LWQ LE+ T ++
Sbjct: 6 KVYLVTGSTDGIGKETAYRL-AAEDATVLIHGRSLYKGQRVANRLKSKFKNSIIDLFIADLSSFQQIRDLSRAIHDKY-----DCIDVIVHNAGVFEEKRKESEDGYELTFAVNVLAPFLLTYLLIDIVPKHSNGRIVVVSCMSHSDSIDLQDLQ--LEKCYDGITAYELSKLCAIMMTYEMAERLRKLGITTNTLDPGLVDTSLLHAGWPEFHGMPAEEADSGFFLATDKQFIDVTGKYFV-RNRESGSAEISYDQTKREKLWQKLEDFTDISF 271 The following BLAST results are available for this feature:
BLAST of EWM30308.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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