rna4358, rna4358 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4358
Unique Name	rna4358
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3558
Alignment location	CM002463.1:374356..375795 +

Link to JBrowse

Properties


Property Name	Value
Product	TIP41-like protein
Orig transcript id	gnl\|cribi\|Naga_100078g10.7010.mrna
Orig protein id	gnl\|cribi\|Naga_100078g10.7010
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:374356..375795 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100078g10	gene4202	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4358	rna4358-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26335.1	cds4348	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:374356..375795+
coding sequence from alignment at CM002463.1:374356..375795+

mRNA sequence

>rna4358 ID=rna4358|Name=rna4358|organism=Nannochloropsis gaditana|type=mRNA|length=3558bp
CATTCTCGCTTTCTTGTCGGTGTACAGGATGTTGCCATGGCCGGAACGTG
GACAAGGCCCTACGGCGACAAGAGCACCATCGAGCTACTCGACCCTCTTC
CGTCTCTGTGCCGTATTACTGCTTCTGCTACAGTGCAATTTGAGGATCAT
TCATGCCAGGACCAGGCACGCCTTCTTGCATCCTCTTTCTGGGAGACGCC
ATTCTACCCGTCTTGGCTCGTTAGCCGGTACGACAGCCTTATCTGGGAAG
GCTGTTACAGATCGTCAACCACCTCTCCCAACCACTCGCTCGGTGCCTCA
CCATCCTGTCCCTCAAGTGTTGGCACCGGCGGGCGGACGGGAGCAGTTTC
TGGCAGCTTTGAATGCAGGCGCCGATCAGGTTTTCCTGGGGCTGAAGAAT
TTCAACGCCCGGGCACGGGCAGAGAATTTTTGTGTTGAAGACTTGAAAGA
GTTGGTGCCCATGGCGCACAAATTCGGCATGCAGGTGCTCGTCACGGTGA
ATGTCCTCATCAAGGAAGAGGAGCTCGGGGTACTCATCGACACCCTTTCG
GCGCTGGAAGAGCTGGAGGTGGACGCCATCATCGTCCAGGACCAGGCAGT
CGGGGCCTTGGTGAGAGAATTCTTCCCCACCTTGCGCATCCATGCGTCCA
CTCAAATGGCCGTCCACAACCTCCAAGGCGTGGTCAAAGCCACAGGATTG
GGGTACCAGCGGGTAGTGCTTGCGCGGGAAGTGACGGCCAAGGAGATGAA
AGAAATCCGAGCAGGCGTGCCGTCCGGAGTGGCGGAGTTGGAAGCTTTTG
TGCACGGTTCGTTGTGTTACTCCTACAGTGGCTTGTGTTTTTTCAGTGGA
GAGACAGACGCGCGCTCAGGGAACCGCGGGGAATGCGCCTACACGTGTCG
GCAGCCGTACACGCTGACGAGCGAGGATGGCATGGGCTTTCTGTTCTCCA
TGGCCGACTTGGACACCAGCCACGACTTGGACCTGCTCGCGGAGGCGGGC
ATCGACACCCTCAAGGTGGAGGGCCGGAAGAAAGGTGAGGGGGCTCGGGC
CCATGCTGGACATTGGTGGACCCACATGTCTCTTTGAGCTTCCCTGTCCA
TCCGCCGCCCTTGGCTGCGAGTCGTCTGCCCGCAGGTCACGGCTTCCCCT
TTCCCTTTCCCTCCTCTCTACTCCCTCCCGCTTTCACAGACGCCCAATAC
GTCGCCTCGGCGGTCGCCCTTTACCGGCGGCGCCTGGACCAGATCTACGC
CCGCCCCACCCTCCGATCCCAAGCCCCCCCCGAGGCCTTCCAGGCCGCTG
CTCAAGCCAGGCACACGCCCGACGCGGGCCTTCGACAGGACCTGGCCCTC
TCCTTCCACCGGCGGACCACCTCCTTCTTCGTCCGAGGCCGGTACCACGA
GAACGTCATCGACTTGGACAACGCAGGGCATTTGGGGGTCTTGGCGGGCC
GCGTCCTCTCCGTGAGCAAGGACGGGCGGACCTTCAAGTTCTCCGCCCTG
GTTGATTTGGAGCGTTACGACGGGATCAAGCTCTGCCCTCCTGCCCGCGC
TTTTCACACCACCCCCCAACACGGCGATGCCCGAGCTGAGGACCGAGGCG
TCCACGCCGCCCGGGAACGCCTGCTGCAGGAGAAGTACGCGAACGAACTT
CCGGAATTTTCCCTGCGTCATTTCAAAGTGCAGGGCAGCAAAGCCTTCGA
GGCGATGGCGGGGGCGACGGTGGAGGTGGAGGTGCCGAGAGAGGTGCGGC
GCGAGTGGGAGCAAGGACATAACGGCCATCGCGCCATCCAAAGCGGGGAT
TTGGTCTTTCAGTCGCGCTCGAACCGGCTGAAACGGCGGGTGCAGGCCTT
GGCAGTGGTCCCAGAGAGCTACAAGGCAAGGAGCTGGACCACGGTGGACG
TGCATGTCCAGGTGGACCGGGCGGGGAGGAAGGGAGGAAGGGAGGGAGGG
AGGGAGGGAGGAAGGGAGGGGACGGGGCAGAAGGGGGAGGAAGGCACGCG
AGGGGGGTTGACTTTGCGCGTCCAGGTGAGCAAGCTGGGGCAGCTCCTGG
TGGAGGAGACGCATGCCTGGCCCACGTGGGAATCAACGACGCGGAAGAGC
AGGGAGGACGTGGTGGGGGACATGGGCGAGGTGCTGGGCGTCTACGGCGA
ACTAGGGATGCGGGCGCGCGCCGTGGTGGTGACCGGACTGGGGGAGGCGG
GGGTCGAGGGCGAAGAAGGCTCCGAGGTGCCTTTCATCCCCCGGAGGGAC
CTCAAGGCGCTGAAGAGCCGCGTGGCAGCCAGGTTGGCGCCTGCGTACGA
GGCCTTCCTCGAGGAGAGGAAAGGAAGGGCAGTGCGGGCCTTGGGTCTGG
GGGAAAAGGAGGCTTTGCTCGTCCCCAACCCCCCCTCTGCGCCCCCTTTG
CCCCCGGGACGGTGGGAGAACCGGCGGTTTGCAGTCAAGATCGATCGGCT
CGAGTACCTGGATCTCCTCGATGAATACCTTGACCAAATCCTGGCCCCTT
GGGGGGAAAGGGAGGGCGAAGGCCGGGCCTGGGTCGACGAGGTGGTGTTC
GAGCCCAAGCGCATGTTCTTGGCCGCGAAAAAGCCGGACGAGGGCATCGC
ACGCCTGTTGGCCTTCGGGCGCCGACATCGGGTGCGCGTCCGCTTGGCCC
TACCGACGGTGGTGCGGGCCTGGGACGCCCCTCCTGTCCGCGCGTGGGTG
GAGGCCTTTGCGGCCGCGCAAGAGCAAGCCGGGCAGGGAGATGGAAGCCG
TCTTTGTTTCGAGGTGGGGAACCTGGGCGCCTGGGGTCTTTTGGAGGAGC
ACGGTCTCCTCCCCGCCTCTTCGAGCGGGCGCCACGTGGACGTGACCACG
GACTTCACCCTGTACTCCCTCAACTCGCAGGCCTCGGCCGTGTGGGCGCG
GTCCTTGGGTGCATCCTTGATCGCCCTCTCGGTCGAGGACGACGCGGCGA
ATTTGGAGGCCCACATGCGCGCGTGGCCCAGGGCAATGGCAAGGGTGGTA
GGCGGCGGGGACGTCCCTGCGGCCGGTGATGAGGGAGTGGGGGAGGGTCG
ACAAGCGGGTTCTGGACATACCCATACCGCCCCGCAATTCATCCTCTACA
AGGATGTGCCCCTTTTCATGGCCGAAGCGTGCAGTTTGACGGCATTGCAC
GGAAACCAATGTCCTGGCTCGAAAGTGTGCGGGTACCGCACTTTGTCGAT
CGAGAACGAGCAAGGGGAAAAGTTTGAGGTGGCACATGAGCATTGTAAGT
CCATTGTCTACAGCACCAACGCCCAGTCGTTGGTGCATCGGCAGCAGGAT
CTTTTAAGGATGGGTATCCGACACTTTCGTTTAGATTTTTTGACCAGGAA
GTACGAGAAACAGCACTTGTTCGAGGTGCTGGATGCGGCCTTGCGGAGGG
AGGCCGATGATACAACGCCATTACCCGATACGCACCAAGCTAATTTTGAC
CGGAGACTTTTGTAAAACTCCAACAATAATGTATATAGTGAAACAGATGT
CCGAAGAAATTGAGCACCCTGAACATGCAGGTGTGGCTTGATGCCCTCTC
AGGAGGTG

protein sequence of rna4358

>rna4358-protein ID=rna4358-protein|Name=rna4358|organism=Nannochloropsis gaditana|type=polypeptide|length=406bp
MPGATVAEEAVLRRNGASVEKSEDSTRIDLGGWQVCSRARPILSDQEREA
LTQRIAHFWSVHCTDAASMMMASHDTSNYSEVGAGCPSTTGQSTRSGIGE
EGASASGDHPADLSNAGHNFIPLPEILFGKSFLELRHSVIPGRSEEEVLG
DSKEEMRSGALPATTDFWLRFNTTGALISWAERHVDTNEKGKVEVIRVPE
ASRWAAGHLGAGLRQVRYDWVFGTDYEGELLRRVRGGGQRDKVEADPCDT
LLDVEERKERSAGLEWEVADASVIDRSLLQCRDQPILFYDDVTLYEDELH
DHGVVSLNVKVRVMPTCWFVLLRYFLRVDGVLLRIRDTRYFHRMGHEWIG
KESRRKEVTFAQLAEEGLSTRTSEYRDVNAVVGMIDSIGPPADVCYTRLV
LHGAPS

mRNA from alignment at CM002463.1:374356..375795+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4358 ID=rna4358|Name=rna4358|organism=Nannochloropsis gaditana|type=mRNA|length=1440bp|location=Sequence derived from alignment at CM002463.1:374356..375795+ (Nannochloropsis gaditana)
ATTTACGTGATAGGTATCTGTTGAAGATCTCAAGCGATGCCAGGTGCTAC
TGTTGCAGAGGAAGCCGTCCTACGGGTGAGAATGTCCTCTTTCTGACCTC
CTCATGGCGTTGTTCCTCGCATTTACCCTCTTGATACTTTTCGCGACCTT
ATATTAACAAACCCTGCACTCTTGGACAGCGTAACGGAGCCAGTGTCGAG
AAAAGTGAAGATAGTACAAGGATCGACCTGGGTGGGTGGCAAGTATGCTC
GCGGGCACGGCCCATCCTGAGTGaccaagagagggaggcgctcACACAGC
GCATTGCGCACTTTTGGAGCGTACATTGCACGGACGCTGCTTCCATGATG
ATGGCGAGCCATGACACCAGTAATTACTCTGAAGTTGGCGCTGGCTGTCC
CAGCACGACTGGTCAGAGCACTAGAAGTGGCATCGGTGAAGAAGGGGCCT
CTGCCTCGGGCGACCACCCAGCTGATCTGAGCAACGCAGGCCATAATTTC
ATTCCACTCCCCGAAATTCTGTTTGGAAAAAGCTTTCTGGAGCTCAGACA
TTCTGTTATCCcagggaggagtgaggaggaagtgctTGGGGactcgaagg
aggaaatgaggagcGGTGCCCTCCCAGCGACAACTGATTTCTGGCTCCGG
TTTAACACCACGGGTGCTCTCATTTCATGGGCTGAGCGACACGTTGACAC
aaatgagaaaggaaaggtaGAAGTGATACGAGTGCCTGAAGCAAGTAGAT
GGGCGGCGGGTCATCTAGGGGCGGGTTTGCGGCAGGTCCGGTACGACTGG
GTGTTCGGGACCGACTACGAGGGAGAGCTTCTGAGGAGGgttaggggggg
aggtcagaGAGataaggtggaggcggatcCTTGCGACACCCTattggacg
tggaggagagaaaggagcggAGCGCAGGGCTGGAGTGGGAGGTGGCCGAC
GCAAGCGTCATTGACCGCTCGTTGCTGCAATGCCGGGACCAGCCGATTCT
GTTCTACGACGATGTCACCTTGTACGAAGACGAACTGCATGACCACGGCG
TTGTCTCGCTCAACGTCAAGGTACGCGTCATGCCAACGTGCTGGTTTGTG
CTTCTGCGTTACTTTCTTCGCGTGGACGGAGTGCTCCTCCGGATCCGAGA
TACTAGGTATTTCCATCGCATGGGCCATGAGTGGATTGGCAAGGAAAGTA
GACGGAAAGAAGTCACATTCGCACAACTTGCCGAGGAAGGTTTGTCGACG
AGGACATCTGAATACCGAGATGTCAATGCAGTGGTCGGTATGATCGATTC
AATCGGCCCTCCCGCCGATGTATGCTACACGCGCTTGGTCCTCCACGGTG
CGCCATCATGATATGGAAGGAAAATTGAAAGACACGTTTCACACTGAATG
AAAGTGTAAGAAAGCAAAATCTGGAGAAATGCCACGTGCT

Coding sequence (CDS) from alignment at CM002463.1:374356..375795+

>rna4358 ID=rna4358|Name=rna4358|organism=Nannochloropsis gaditana|type=CDS|length=2442bp|location=Sequence derived from alignment at CM002463.1:374356..375795+ (Nannochloropsis gaditana)
ATGCCAGGTGCTACTGTTGCAGAGGAAGCCGTCCTACGGCGTAACGGAGC
CAGTGTCGAGAAAAGTGAAGATAGTACAAGGATCGACCTGGGTGGGTGGC
AAGTATGCTCGCGGGCACGGCCCATCCTGAGTGaccaagagagggaggcg
ctcACACAGCGCATTGCGCACTTTTGGAGCGTACATTGCACGGACGCTGC
TTCCATGATGATGGCGAGCCATGACACCAGTAATTACTCTGAAGTTGGCG
CTGGCTGTCCCAGCACGACTGGTCAGAGCACTAGAAGTGGCATCGGTGAA
GAAGGGGCCTCTGCCTCGGGCGACCACCCAGCTGATCTGAGCAACGCAGG
CCATAATTTCATTCCACTCCCCGAAATTCTGTTTGGAAAAAGCTTTCTGG
AGCTCAGACATTCTGTTATCCcagggaggagtgaggaggaagtgctTGGG
GactcgaaggaggaaatgaggagcGGTGCCCTCCCAGCGACAACTGATTT
CTGGCTCCGGTTTAACACCACGGGTGCTCTCATTTCATGGGCTGAGCGAC
ACGTTGACACaaatgagaaaggaaaggtaGAAGTGATACGAGTGCCTGAA
GCAAGTAGATGGGCGGCGGGTCATCTAGGGGCGGGTTTGCGGCAGGTCCG
GTACGACTGGGTGTTCGGGACCGACTACGAGGGAGAGCTTCTGAGGAGGg
ttagggggggaggtcagaGAGataaggtggaggcggatcCTTGCGACACC
CTattggacgtggaggagagaaaggagcggAGCGCAGGGCTGGAGTGGGA
GGTGGCCGACGCAAGCGTCATTGACCGCTCGTTGCTGCAATGCCGGGACC
AGCCGATTCTGTTCTACGACGATGTCACCTTGTACGAAGACGAACTGCAT
GACCACGGCGTTGTCTCGCTCAACGTCAAGGTACGCGTCATGCCAACGTG
CTGGTTTGTGCTTCTGCGTTACTTTCTTCGCGTGGACGGAGTGCTCCTCC
GGATCCGAGATACTAGGTATTTCCATCGCATGGGCCATGAGTGGATTGGC
AAGGAAAGTAGACGGAAAGAAGTCACATTCGCACAACTTGCCGAGGAAGG
TTTGTCGACGAGGACATCTGAATACCGAGATGTCAATGCAGTGGTCGGTA
TGATCGATTCAATCGGCCCTCCCGCCGATGTATGCTACACGCGCTTGGTC
CTCCACGGTGCGCCATCATGAATGCCAGGTGCTACTGTTGCAGAGGAAGC
CGTCCTACGGCGTAACGGAGCCAGTGTCGAGAAAAGTGAAGATAGTACAA
GGATCGACCTGGGTGGGTGGCAAGTATGCTCGCGGGCACGGCCCATCCTG
AGTGaccaagagagggaggcgctcACACAGCGCATTGCGCACTTTTGGAG
CGTACATTGCACGGACGCTGCTTCCATGATGATGGCGAGCCATGACACCA
GTAATTACTCTGAAGTTGGCGCTGGCTGTCCCAGCACGACTGGTCAGAGC
ACTAGAAGTGGCATCGGTGAAGAAGGGGCCTCTGCCTCGGGCGACCACCC
AGCTGATCTGAGCAACGCAGGCCATAATTTCATTCCACTCCCCGAAATTC
TGTTTGGAAAAAGCTTTCTGGAGCTCAGACATTCTGTTATCCcagggagg
agtgaggaggaagtgctTGGGGactcgaaggaggaaatgaggagcGGTGC
CCTCCCAGCGACAACTGATTTCTGGCTCCGGTTTAACACCACGGGTGCTC
TCATTTCATGGGCTGAGCGACACGTTGACACaaatgagaaaggaaaggta
GAAGTGATACGAGTGCCTGAAGCAAGTAGATGGGCGGCGGGTCATCTAGG
GGCGGGTTTGCGGCAGGTCCGGTACGACTGGGTGTTCGGGACCGACTACG
AGGGAGAGCTTCTGAGGAGGgttagggggggaggtcagaGAGataaggtg
gaggcggatcCTTGCGACACCCTattggacgtggaggagagaaaggagcg
gAGCGCAGGGCTGGAGTGGGAGGTGGCCGACGCAAGCGTCATTGACCGCT
CGTTGCTGCAATGCCGGGACCAGCCGATTCTGTTCTACGACGATGTCACC
TTGTACGAAGACGAACTGCATGACCACGGCGTTGTCTCGCTCAACGTCAA
GGTACGCGTCATGCCAACGTGCTGGTTTGTGCTTCTGCGTTACTTTCTTC
GCGTGGACGGAGTGCTCCTCCGGATCCGAGATACTAGGTATTTCCATCGC
ATGGGCCATGAGTGGATTGGCAAGGAAAGTAGACGGAAAGAAGTCACATT
CGCACAACTTGCCGAGGAAGGTTTGTCGACGAGGACATCTGAATACCGAG
ATGTCAATGCAGTGGTCGGTATGATCGATTCAATCGGCCCTCCCGCCGAT
GTATGCTACACGCGCTTGGTCCTCCACGGTGCGCCATCATGA

Synonyms

Publications