rna4357, rna4357 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4357
Unique Name	rna4357
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1290
Alignment location	CM002463.1:370610..374167 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100078g11.6993.mrna
Orig protein id	gnl\|cribi\|Naga_100078g11.6993
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:370610..374167 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100078g11	gene4201	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26318.1	cds4347	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4357	rna4357-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:370610..374167-
coding sequence from alignment at CM002463.1:370610..374167-

mRNA sequence

>rna4357 ID=rna4357|Name=rna4357|organism=Nannochloropsis gaditana|type=mRNA|length=1290bp
GCGGAATGGCTCGCTTGCCTGAACGAAGAACTTGCTCTGCGTCAATCGAG
GGGCGCGGCCGACAGCCATAAGTTGAAGTTTTACCCTAGCCGCATGCGCA
GGTGCAGTTTGCCCAGGACATAAAGACGCTGAATGTTGTGTCGATTGAGG
AGTAGGTGCCGAAGGGGAGGAAGCGGTGGATGCTGAAGGACGGAGAAGGT
CTACCGTGCCCCCAGTGCTTGTCGATGCGTTCATGGAGAAGTCTTCGCCT
GCGGGCCCGCCAGGTCGAGAACACATGGCGGGGGTTGCCGCGGTCAATGC
TGTACTTGTCGCTTGGCTTGTACGCGAGGGGATGTCGTCCTCTCTTTCAA
TCCTCAGTGTGGGCATGGATGGAGGCTCGTCGAAGGCCTGTGCTTGCGGC
ACTGACGGCGGGGAGGCTGCAGGGGCACCTGACGATGTGGCATCCTCCTC
TCTTTCCTCTTCCATTTCACTGTACTAGGCAAATTACTGATGCCGAGTAG
TGTTGCTAGCAAGTTTTTCACACTGTTGTTCCTGGAAATTTTGGAAGAAA
GAGCAGTAGAACATTTTGAAGGAGTACGTTCCTAAAGCCTCAGTCCAGCT
CAGCGGGCTTTCTTTCAAGTCGAGGTCCTTGGACACTTCTTCCGAATGTT
CTCCGTTAAATTTAATGCCACGTGTCTACAACGTTCACACGTGCACTTGT
GCAAGCATTCGTCTTCTGATCTCTCTTCCTCGCCTTTGTCGACGTACACT
CCCCCAGTCGAGCCCGACCTCCTCCCCCCACCTTACAGACCCCGTCTGGA
ATATGCGGCCTGATCTGGAGACAGTGCCAAATCAGTTGGGTACAGCGTCA
CTTAGACTGGACACAGGAGCTATTCTTTCGCAAACAGGGCAAATGGATAC
GCCTTTGGGGTCGGAGGCTGCCCACACTCTCTATCAAATACTGCTCGACA
CGGGCTTAATCTTGAAAGCCCCTTTGCATCACGGGGAGGCCTTGCGTCGC
ATCGCGGTGCAGTTCAGGTCTTTCCAATACGTCATGACAGTATCGAAGGA
TGAGGTATTCATAGTAAAAAAGACGCCGGACGACACGCGCGGATAACAAA
GTGAAAATCGGACCGTACCTCACGCGGTAGGAAAGCATGTGCCCCTGTAA
GATAAGAGGCCCCTGTGCAAAACTGCACAGGTTCGACATTGCTTGTAAAA
TATACGCGACACGTCTCTCTATCTAGCCTAAGGGCATCCAAAAGAAATGT
AAAGCAGCATCAACCTGCGCGCAACTGACGAAATCAAAGG

protein sequence of rna4357

>rna4357-protein ID=rna4357-protein|Name=rna4357|organism=Nannochloropsis gaditana|type=polypeptide|length=586bp
MAGATVEVEVPREVRREWEQGHNGHRAIQSGDLVFQSRSNRLKRRVQALA
VVPESYKARSWTTVDVHVQVDRAGRKGGREGGREGGREGTGQKGEEGTRG
GLTLRVQVSKLGQLLVEETHAWPTWESTTRKSREDVVGDMGEVLGVYGEL
GMRARAVVVTGLGEAGVEGEEGSEVPFIPRRDLKALKSRVAARLAPAYEA
FLEERKGRAVRALGLGEKEALLVPNPPSAPPLPPGRWENRRFAVKIDRLE
YLDLLDEYLDQILAPWGEREGEGRAWVDEVVFEPKRMFLAAKKPDEGIAR
LLAFGRRHRVRVRLALPTVVRAWDAPPVRAWVEAFAAAQEQAGQGDGSRL
CFEVGNLGAWGLLEEHGLLPASSSGRHVDVTTDFTLYSLNSQASAVWARS
LGASLIALSVEDDAANLEAHMRAWPRAMARVVGGGDVPAAGDEGVGEGRQ
AGSGHTHTAPQFILYKDVPLFMAEACSLTALHGNQCPGSKVCGYRTLSIE
NEQGEKFEVAHEHCKSIVYSTNAQSLVHRQQDLLRMGIRHFRLDFLTRKY
EKQHLFEVLDAALRREADDTTPLPDTHQANFDRRLL

mRNA from alignment at CM002463.1:370610..374167-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4357 ID=rna4357|Name=rna4357|organism=Nannochloropsis gaditana|type=mRNA|length=3558bp|location=Sequence derived from alignment at CM002463.1:370610..374167- (Nannochloropsis gaditana)
CATTCTCGCTTTCTTGTCGGTGTACAGGATGTTGCCATGGCCGGAACGTG
GACAAGGCCCTACGGCGACAAGAGCACCATCGAGCTACTCGACCCTCTTC
CGTCTCTGTGCCGTATTACTGCTTCTGCTACAGTGCAATTTGAGGATCAT
TCATGCCAGGACCAGGCACGCCTTCTTGCATCCTCTTTCTGGGAGACGCC
ATTCTACCCGTCTTGGCTCGTTAGCCGGTACGACAGCCTTATCTGGGAAG
GCTGTTACAGATCGTCAACCACCTCTCCCAACCACTCGCTCGGTGCCTCA
CCATCCTGTCCCTCAAGTGTTGGCACCGGCGGGCGGACGGGAGCAGTTTC
TGGCAGCTTTGAATGCAGGCGCCGATCAGGTTTTCCTGGGGCTGAAGAAT
TTCAACGCCCGGGCACGGGCAGAGAATTTTTGTGTTGAAGACTTGAAAGA
GTTGGTGCCCATGGCGCACAAATTCGGCATGCAGGTGCTCGTCACGGTGA
ATGTCCTCATCAAGGAAGAGGAGCTCGGGGTACTCATCGACACCCTTTCG
GCGCTGGAAGAGCTGGAGGTGGACGCCATCATCGTCCAGGACCAGGCAGT
CGGGGCCTTGGTGAGAGAATTCTTCCCCACCTTGCGCATCCATGCGTCCA
CTCAAATGGCCGTCCACAACCTCCAAGGCGTGGTCAAAGCCACAGGATTG
GGGTACCAGCGGGTAGTGCTTGCGCGGGAAGTGACGGCCAAGGAGATGAA
AGAAATCCGAGCAGGCGTGCCGTCCGGAGTGGCGGAGTTGGAAGCTTTTG
TGCACGGTTCGTTGTGTTACTCCTACAGTGGCTTGTGTTTTTTCAGTGGA
GAGACAGACGCGCGCTCAGGGAACCGCGGGGAATGCGCCTACACGTGTCG
GCAGCCGTACACGCTGACGAGCGAGGATGGCATGGGCTTTCTGTTCTCCA
TGGCCGACTTGGACACCAGCCACGACTTGGACCTGCTCGCGGAGGCGGGC
ATCGACACCCTCAAGGTGGAGGGCCGGAAGAAAGGTGAGGGGGCTCGGGC
CCATGCTGGACATTGGTGGACCCACATGTCTCTTTGAGCTTCCCTGTCCA
TCCGCCGCCCTTGGCTGCGAGTCGTCTGCCCGCAGGTCACGGCTTCCCCT
TTCCCTTTCCCTCCTCTCTACTCCCTCCCGCTTTCACAGACGCCCAATAC
GTCGCCTCGGCGGTCGCCCTTTACCGGCGGCGCCTGGACCAGATCTACGC
CCGCCCCACCCTCCGATCCCAAGCCCCCCCCGAGGCCTTCCAGGCCGCTG
CTCAAGCCAGGCACACGCCCGACGCGGGCCTTCGACAGGACCTGGCCCTC
TCCTTCCACCGGCGGACCACCTCCTTCTTCGTCCGAGGCCGGTACCACGA
GAACGTCATCGACTTGGACAACGCAGGGCATTTGGGGGTCTTGGCGGGCC
GCGTCCTCTCCGTGAGCAAGGACGGGCGGACCTTCAAGTTCTCCGCCCTG
GTTGATTTGGAGCGTTACGACGGGATCAAGCTCTGCCCTCCTGCCCGCGC
TTTTCACACCACCCCCCAACACGGCGATGCCCGAGCTGAGGACCGAGGCG
TCCACGCCGCCCGGGAACGCCTGCTGCAGGAGAAGTACGCGAACGAACTT
CCGGAATTTTCCCTGCGTCATTTCAAAGTGCAGGGCAGCAAAGCCTTCGA
GGCGATGGCGGGGGCGACGGTGGAGGTGGAGGTGCCGAGAGAGGTGCGGC
GCGAGTGGGAGCAAGGACATAACGGCCATCGCGCCATCCAAAGCGGGGAT
TTGGTCTTTCAGTCGCGCTCGAACCGGCTGAAACGGCGGGTGCAGGCCTT
GGCAGTGGTCCCAGAGAGCTACAAGGCAAGGAGCTGGACCACGGTGGACG
TGCATGTCCAGGTGGACCGGGCGGGGAGGAAGGGAGGAAGGGAGGGAGGG
AGGGAGGGAGGAAGGGAGGGGACGGGGCAGAAGGGGGAGGAAGGCACGCG
AGGGGGGTTGACTTTGCGCGTCCAGGTGAGCAAGCTGGGGCAGCTCCTGG
TGGAGGAGACGCATGCCTGGCCCACGTGGGAATCAACGACGCGGAAGAGC
AGGGAGGACGTGGTGGGGGACATGGGCGAGGTGCTGGGCGTCTACGGCGA
ACTAGGGATGCGGGCGCGCGCCGTGGTGGTGACCGGACTGGGGGAGGCGG
GGGTCGAGGGCGAAGAAGGCTCCGAGGTGCCTTTCATCCCCCGGAGGGAC
CTCAAGGCGCTGAAGAGCCGCGTGGCAGCCAGGTTGGCGCCTGCGTACGA
GGCCTTCCTCGAGGAGAGGAAAGGAAGGGCAGTGCGGGCCTTGGGTCTGG
GGGAAAAGGAGGCTTTGCTCGTCCCCAACCCCCCCTCTGCGCCCCCTTTG
CCCCCGGGACGGTGGGAGAACCGGCGGTTTGCAGTCAAGATCGATCGGCT
CGAGTACCTGGATCTCCTCGATGAATACCTTGACCAAATCCTGGCCCCTT
GGGGGGAAAGGGAGGGCGAAGGCCGGGCCTGGGTCGACGAGGTGGTGTTC
GAGCCCAAGCGCATGTTCTTGGCCGCGAAAAAGCCGGACGAGGGCATCGC
ACGCCTGTTGGCCTTCGGGCGCCGACATCGGGTGCGCGTCCGCTTGGCCC
TACCGACGGTGGTGCGGGCCTGGGACGCCCCTCCTGTCCGCGCGTGGGTG
GAGGCCTTTGCGGCCGCGCAAGAGCAAGCCGGGCAGGGAGATGGAAGCCG
TCTTTGTTTCGAGGTGGGGAACCTGGGCGCCTGGGGTCTTTTGGAGGAGC
ACGGTCTCCTCCCCGCCTCTTCGAGCGGGCGCCACGTGGACGTGACCACG
GACTTCACCCTGTACTCCCTCAACTCGCAGGCCTCGGCCGTGTGGGCGCG
GTCCTTGGGTGCATCCTTGATCGCCCTCTCGGTCGAGGACGACGCGGCGA
ATTTGGAGGCCCACATGCGCGCGTGGCCCAGGGCAATGGCAAGGGTGGTA
GGCGGCGGGGACGTCCCTGCGGCCGGTGATGAGGGAGTGGGGGAGGGTCG
ACAAGCGGGTTCTGGACATACCCATACCGCCCCGCAATTCATCCTCTACA
AGGATGTGCCCCTTTTCATGGCCGAAGCGTGCAGTTTGACGGCATTGCAC
GGAAACCAATGTCCTGGCTCGAAAGTGTGCGGGTACCGCACTTTGTCGAT
CGAGAACGAGCAAGGGGAAAAGTTTGAGGTGGCACATGAGCATTGTAAGT
CCATTGTCTACAGCACCAACGCCCAGTCGTTGGTGCATCGGCAGCAGGAT
CTTTTAAGGATGGGTATCCGACACTTTCGTTTAGATTTTTTGACCAGGAA
GTACGAGAAACAGCACTTGTTCGAGGTGCTGGATGCGGCCTTGCGGAGGG
AGGCCGATGATACAACGCCATTACCCGATACGCACCAAGCTAATTTTGAC
CGGAGACTTTTGTAAAACTCCAACAATAATGTATATAGTGAAACAGATGT
CCGAAGAAATTGAGCACCCTGAACATGCAGGTGTGGCTTGATGCCCTCTC
AGGAGGTG

Coding sequence (CDS) from alignment at CM002463.1:370610..374167-

>rna4357 ID=rna4357|Name=rna4357|organism=Nannochloropsis gaditana|type=CDS|length=1761bp|location=Sequence derived from alignment at CM002463.1:370610..374167- (Nannochloropsis gaditana)
ATGGCGGGGGCGACGGTGGAGGTGGAGGTGCCGAGAGAGGTGCGGCGCGA
GTGGGAGCAAGGACATAACGGCCATCGCGCCATCCAAAGCGGGGATTTGG
TCTTTCAGTCGCGCTCGAACCGGCTGAAACGGCGGGTGCAGGCCTTGGCA
GTGGTCCCAGAGAGCTACAAGGCAAGGAGCTGGACCACGGTGGACGTGCA
TGTCCAGGTGGACCGGGCGGGGAGGAAGGGAGGAAGGGAGGGAGGGAGGG
AGGGAGGAAGGGAGGGGACGGGGCAGAAGGGGGAGGAAGGCACGCGAGGG
GGGTTGACTTTGCGCGTCCAGGTGAGCAAGCTGGGGCAGCTCCTGGTGGA
GGAGACGCATGCCTGGCCCACGTGGGAATCAACGACGCGGAAGAGCAGGG
AGGACGTGGTGGGGGACATGGGCGAGGTGCTGGGCGTCTACGGCGAACTA
GGGATGCGGGCGCGCGCCGTGGTGGTGACCGGACTGGGGGAGGCGGGGGT
CGAGGGCGAAGAAGGCTCCGAGGTGCCTTTCATCCCCCGGAGGGACCTCA
AGGCGCTGAAGAGCCGCGTGGCAGCCAGGTTGGCGCCTGCGTACGAGGCC
TTCCTCGAGGAGAGGAAAGGAAGGGCAGTGCGGGCCTTGGGTCTGGGGGA
AAAGGAGGCTTTGCTCGTCCCCAACCCCCCCTCTGCGCCCCCTTTGCCCC
CGGGACGGTGGGAGAACCGGCGGTTTGCAGTCAAGATCGATCGGCTCGAG
TACCTGGATCTCCTCGATGAATACCTTGACCAAATCCTGGCCCCTTGGGG
GGAAAGGGAGGGCGAAGGCCGGGCCTGGGTCGACGAGGTGGTGTTCGAGC
CCAAGCGCATGTTCTTGGCCGCGAAAAAGCCGGACGAGGGCATCGCACGC
CTGTTGGCCTTCGGGCGCCGACATCGGGTGCGCGTCCGCTTGGCCCTACC
GACGGTGGTGCGGGCCTGGGACGCCCCTCCTGTCCGCGCGTGGGTGGAGG
CCTTTGCGGCCGCGCAAGAGCAAGCCGGGCAGGGAGATGGAAGCCGTCTT
TGTTTCGAGGTGGGGAACCTGGGCGCCTGGGGTCTTTTGGAGGAGCACGG
TCTCCTCCCCGCCTCTTCGAGCGGGCGCCACGTGGACGTGACCACGGACT
TCACCCTGTACTCCCTCAACTCGCAGGCCTCGGCCGTGTGGGCGCGGTCC
TTGGGTGCATCCTTGATCGCCCTCTCGGTCGAGGACGACGCGGCGAATTT
GGAGGCCCACATGCGCGCGTGGCCCAGGGCAATGGCAAGGGTGGTAGGCG
GCGGGGACGTCCCTGCGGCCGGTGATGAGGGAGTGGGGGAGGGTCGACAA
GCGGGTTCTGGACATACCCATACCGCCCCGCAATTCATCCTCTACAAGGA
TGTGCCCCTTTTCATGGCCGAAGCGTGCAGTTTGACGGCATTGCACGGAA
ACCAATGTCCTGGCTCGAAAGTGTGCGGGTACCGCACTTTGTCGATCGAG
AACGAGCAAGGGGAAAAGTTTGAGGTGGCACATGAGCATTGTAAGTCCAT
TGTCTACAGCACCAACGCCCAGTCGTTGGTGCATCGGCAGCAGGATCTTT
TAAGGATGGGTATCCGACACTTTCGTTTAGATTTTTTGACCAGGAAGTAC
GAGAAACAGCACTTGTTCGAGGTGCTGGATGCGGCCTTGCGGAGGGAGGC
CGATGATACAACGCCATTACCCGATACGCACCAAGCTAATTTTGACCGGA
GACTTTTGTAA

Synonyms

Publications