rna4356, rna4356 (mRNA) Nannochloropsis gaditana

Overview
Namerna4356
Unique Namerna4356
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1517
Alignment locationCM002463.1:369316..370605 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100078g12.7003.mrna
Orig protein idgnl|cribi|Naga_100078g12.7003
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:369316..370605 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100078g12gene4200Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4356rna4356-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM26328.1cds4346Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4356 ID=rna4356|Name=rna4356|organism=Nannochloropsis gaditana|type=mRNA|length=1517bp
CTGTGTCCAGTCTAAGTGACGCTGTACCCAACTGATTTGGCACTGTCTCC
AGATCAGGCCGCATATTCCAGACGGGGTCTGTAAGGTGGGGGGAGGAGGT
CGGGCTCGACTGGGGGAGTGTACGTCGACAAAGGCGAGGAAGAGAGATCA
GAAGACGAATGCTTGCACAAGTGCACGTGTGAACGTTGTAGACACGTGGC
ATTAAATTTAACGGAGAACATTCGGAAGAAGTGTCCAAGGACCTCGACTT
GAAAGAAAGCCCGCTGAGCTGGACTGAGGCTTTAGGAACGTACTCCTTCA
AAATGTTCTACTGCTCTTTCTTCCAAAATTTCCAGGAACAACAGTGTGAA
AAACTTGCTAGCAACACTACTCGGCATCAGTAATTTGCCTAGTACAGTGA
AATGGAAGAGGAAAGAGAGGAGGATGCCACATCGTCAGGTGCCCCTGCAG
CCTCCCCGCCGTCAGTGCCGCAAGCACAGGCCTTCGACGAGCCTCCATCC
ATGCCCACACTGAGGATTGAAAGAGAGGACGACATCCCCTCGCGTACAAG
CCAAGCGACAAGTACAGCATTGACCGCGGCAACCCCCGCCATGTGTTCTC
GACCTGGCGGGCCCGCAGGCGAAGACTTCTCCATGAACGCATCGACAAGC
ACTGGGGGCACGGTAGACCTTCTCCGTCCTTCAGCATCCACCGCTTCCTC
CCCTTCGGCACCTACTCCTCAATCGACACAACATTCAGCGTCTTTATGTC
CTGGGCAAACTGCACCTGCGCATGCGGCTAGGGTAAAACTTCAACTTATG
GCTGTCGGCCGCGCCCCTCGATTGACGCAGAGCAAGTTCTTCGTTCAGGC
AAGCGAGCCATTCCGCGCTTTGTTCCCTGTCCTGCGTCGCTTGCTTCAGC
TGAAAGAAAGCGAAGCGCTTTTTGTCTTCGTCAACTCGGCCTTTGCTCCT
GCGCCAGAGGATAAATTTGGAGATCTCCAGAAATGCTTCAGCAGGGGTGG
TGCCCTGATAATTAATTACAGCCTAGACGAGGCGTGGGGATGAGAATAAG
GCAGCGGACAGGCACTTAGAGATGCTCCAGCCGGGCCTGACCTGATAGCT
ATATGCGTGGCGCTGGACCAGGGATATGGCACCATTTTGAGTCAGATCTG
CTCTTTTTATGCCTCGGACGACTAAGAAATGACCGAAAAGAGGCACGGAC
ACGGGTAAGGACACTCTTGCATTGGCTCCTTCGACGACTTCCGCGATGCC
GATTTGGCACCTTACTTTAGGCTGGGCTGTTTTGATTATGTGTGGTGTAC
GGTTTACATACATAGGTGTACGGCACTTTTATTGCTTCGCTATTGGAATA
TGTGCCCTTGCTGATTTGGTGAAGGAAACAAGGTGATGTCGATCATTATC
TACTCGAGTAATTTTACATGAGGATGCGCATTTATCCAAGCGCGACAACT
CCCCCTTTCCAAAAAGGGCCTTTTTCTTAAAATAAAGAAAGTAAATGTAC
ATAGGAAGTCGTAAACC
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protein sequence of rna4356

>rna4356-protein ID=rna4356-protein|Name=rna4356|organism=Nannochloropsis gaditana|type=polypeptide|length=143bp
MPRVYNVHTCTCASIRLLISLPRLCRRTLPQSSPTSSPHLTDPVWNMRPD
LETVPNQLGTASLRLDTGAILSQTGQMDTPLGSEAAHTLYQILLDTGLIL
KAPLHHGEALRRIAVQFRSFQYVMTVSKDEVFIVKKTPDDTRG
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mRNA from alignment at CM002463.1:369316..370605+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4356 ID=rna4356|Name=rna4356|organism=Nannochloropsis gaditana|type=mRNA|length=1290bp|location=Sequence derived from alignment at CM002463.1:369316..370605+ (Nannochloropsis gaditana)
GCGGAATGGCTCGCTTGCCTGAACGAAGAACTTGCTCTGCGTCAATCGAG
GGGCGCGGCCGACAGCCATAAGTTGAAGTTTTACCCTAGCCGCATGCGCA
GGTGCAGTTTGCCCAGGACATAAAGACGCTGAATGTTGTGTCGATTGAGG
AGTAGGTgccgaaggggaggaagcggtggatgctgaaggacggagaaggt
CTACCGTGCCCCCAGTGCTTGTCGATGCGTTCATGGAGAAGTCTTCGCCT
GCGGGCCCGCCAGGTCGAGAACACATGGCGGGGGTTGCCGCGGTCAATGC
TGTACTTGTCGCTTGGCTTGTACGCGAGGGGATGTCGTCCTCTCTTTCAA
TCCTCAGTGTGGGCATGGATGGAGGCTCGTCGAAGGCCTGTGCTTGCGGC
ACtgacggcggggaggctGCAGGGGCACCTGACGATGtggcatcctcctc
tctttcctcttccatttcacTGTACTAGGCAAATTACTGATGCCGAGTAG
TGTTGCTAGCAAGTTTTTCACACTGTTGTTCCTGGAAATTTTGGAAGAAA
GAGCAGTAGAACATTTTGAAGGAGTACGTTCCTAAAGCCTCAGTCCAGCT
CAGCGGGCTTTCTTTCAAGTCGAGGTCCTTGGACACTTCTTCCGAATGTT
CTCCGTTAAATTTAATGCCACGTGTCTACAACGTTCACACGTGCACTTGT
GCAAGCATTCGTCTTCTGatctctcttcctcgcctttgtCGACGTACACT
CCCCCAGTCgagcccgacctcctccccccaccttaCAGACCCCGTCTGGA
ATATGCGGCCTGATCTGGAGACAGTGCCAAATCAGTTGGGTACAGCGTCA
CTTAGACTGGACACAGGAGCTATTCTTTCGCAAACAGGGCAAATGGATAC
GCCTTTGGGGTCGGAGGCTGCCCACACTCTCTATCAAATACTGCTCGACA
CGGGCTTAATCTTGAAAGCCCCTTTGCATCACGGGGAGGCCTTGCGTCGC
ATCGCGGTGCAGTTCAGGTCTTTCCAATACGTCATGACAGTATCGAAGGA
TGAGGTATTCATAGTAAAAAAGACGCCGGACGACACGCGCGGATAACAAA
GTGAAAATCGGACCGTACCTCACGCGGTAGGAAAGCATGTGCCCCTGTAA
GATAAGAGGCCCCTGTGCAAAACTGCACAGGTTCGACATTGCTTGTAAAA
TATACGCGACACGTCTCTCTATCTAGCCTAAGGGCATCCAAAAGAAATGT
AAAGCAGCATCAACCTGCGCGCAACTGACGAAATCAAAGG
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Coding sequence (CDS) from alignment at CM002463.1:369316..370605+

>rna4356 ID=rna4356|Name=rna4356|organism=Nannochloropsis gaditana|type=CDS|length=432bp|location=Sequence derived from alignment at CM002463.1:369316..370605+ (Nannochloropsis gaditana)
ATGCCACGTGTCTACAACGTTCACACGTGCACTTGTGCAAGCATTCGTCT
TCTGatctctcttcctcgcctttgtCGACGTACACTCCCCCAGTCgagcc
cgacctcctccccccaccttaCAGACCCCGTCTGGAATATGCGGCCTGAT
CTGGAGACAGTGCCAAATCAGTTGGGTACAGCGTCACTTAGACTGGACAC
AGGAGCTATTCTTTCGCAAACAGGGCAAATGGATACGCCTTTGGGGTCGG
AGGCTGCCCACACTCTCTATCAAATACTGCTCGACACGGGCTTAATCTTG
AAAGCCCCTTTGCATCACGGGGAGGCCTTGCGTCGCATCGCGGTGCAGTT
CAGGTCTTTCCAATACGTCATGACAGTATCGAAGGATGAGGTATTCATAG
TAAAAAAGACGCCGGACGACACGCGCGGATAA
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Synonyms
Publications