EWM26328.1, cds4346 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
Homology
BLAST of EWM26328.1 vs. NCBI_GenBank
Match: gi|585108335|gb|EWM26328.1| (hypothetical protein Naga_100078g12 [Nannochloropsis gaditana]) HSP 1 Score: 295.049 bits (754), Expect = 2.776e-101 Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0
Query: 1 MPRVYNVHTCTCASIRLLISLPRLCRRTLPQSSPTSSPHLTDPVWNMRPDLETVPNQLGTASLRLDTGAILSQTGQMDTPLGSEAAHTLYQILLDTGLILKAPLHHGEALRRIAVQFRSFQYVMTVSKDEVFIVKKTPDDTRG 143
MPRVYNVHTCTCASIRLLISLPRLCRRTLPQSSPTSSPHLTDPVWNMRPDLETVPNQLGTASLRLDTGAILSQTGQMDTPLGSEAAHTLYQILLDTGLILKAPLHHGEALRRIAVQFRSFQYVMTVSKDEVFIVKKTPDDTRG
Sbjct: 1 MPRVYNVHTCTCASIRLLISLPRLCRRTLPQSSPTSSPHLTDPVWNMRPDLETVPNQLGTASLRLDTGAILSQTGQMDTPLGSEAAHTLYQILLDTGLILKAPLHHGEALRRIAVQFRSFQYVMTVSKDEVFIVKKTPDDTRG 143
BLAST of EWM26328.1 vs. NCBI_GenBank
Match: gi|325183327|emb|CCA17785.1| (AlNc14C40G3430 [Albugo laibachii Nc14]) HSP 1 Score: 57.7658 bits (138), Expect = 2.580e-8 Identity = 31/89 (34.83%), Postives = 46/89 (51.69%), Query Frame = 0
Query: 49 PDLETVPNQLGTASLRLDTGAILSQTGQMDTPLGSEAAHTLYQILLDTGLILKAPLHHGEALRRIAVQFRSFQYVMTVSKDEVFIVKKT 137
DL+ VPNQ+G+ L G ILS +G +D G A LY +L D +L+ H E +R V + +Y++T + V+IV K
Sbjct: 2 EDLQFVPNQIGSLILSRANGCILSASGTLDNTTGKRVASVLYSMLQDAANVLE---HSDEVFKRFTVTHPTNKYIVTSDTNRVYIVHKN 87
BLAST of EWM26328.1 vs. NCBI_GenBank
Match: gi|669169163|ref|XP_008619930.1| (hypothetical protein SDRG_15532 [Saprolegnia diclina VS20] >gi|530728350|gb|EQC26592.1| hypothetical protein SDRG_15532 [Saprolegnia diclina VS20]) HSP 1 Score: 57.3806 bits (137), Expect = 4.390e-8 Identity = 33/87 (37.93%), Postives = 51/87 (58.62%), Query Frame = 0
Query: 55 PNQLGTASLRLDTGAILSQTGQMDTPLGSEAAHTLYQILLDTG--LILKAPLHHGEALRRIAVQFRSFQYVMTVSKDEVFIVKKTPD 139
PNQ+G A + LD G+I+S G + G +A + + +LLD G ILKA E L I + F S++Y +++ + ++IVK TPD
Sbjct: 13 PNQIGVAIVTLD-GSIVSAAGDLAGDEGVDACNAVRHMLLDVGNLSILKATDPQRELLESITIAFPSYEYSVSLDESHLYIVKSTPD 98
BLAST of EWM26328.1 vs. NCBI_GenBank
Match: gi|675206023|ref|XP_008911896.1| (hypothetical protein PPTG_15884, partial [Phytophthora parasitica INRA-310] >gi|568088075|gb|ETN02939.1| hypothetical protein PPTG_15884, partial [Phytophthora parasitica INRA-310]) HSP 1 Score: 55.8398 bits (133), Expect = 1.226e-7 Identity = 31/88 (35.23%), Postives = 53/88 (60.23%), Query Frame = 0
Query: 51 LETVPNQLGTASLRLDTGAILSQTGQMDTPLGSEAAHTLYQILLDTGLILKAPLHHGEALRRIAVQFRSFQYVMTVSKDEVFIVKKTP 138
L TV Q GT L ++ G +LS TG++ G AA T+Y +L D+ +L A E L+R+ + F ++ YV+T+ ++V++VK++
Sbjct: 5 LRTVNGQTGTLVLDIN-GQVLSATGELRGTSGEIAAETIYSMLQDSSSVLDAS--QKEELQRMTITFPTYDYVVTLDAEQVYVVKRSS 89
BLAST of EWM26328.1 vs. NCBI_GenBank
Match: gi|675181525|ref|XP_008899647.1| (hypothetical protein PPTG_07234 [Phytophthora parasitica INRA-310] >gi|566031911|gb|ETI54822.1| hypothetical protein F443_02417 [Phytophthora parasitica P1569] >gi|567969599|gb|ETK94682.1| hypothetical protein L915_02297 [Phytophthora parasitica] >gi|567998000|gb|ETL48079.1| hypothetical protein L916_02257 [Phytophthora parasitica] >gi|568027206|gb|ETM01170.1| hypothetical protein L917_02194 [Phytophthora parasitica] >gi|568057697|gb|ETM54351.1| hypothetical protein L914_02287 [Phytophthora parasitica] >gi|568100315|gb|ETN15014.1| hypothetical protein PPTG_07234 [Phytophthora parasitica INRA-310] >gi|570335637|gb|ETO83585.1| hypothetical protein F444_02401 [Phytophthora parasitica P1976] >gi|570959680|gb|ETP24659.1| hypothetical protein F441_02368 [Phytophthora parasitica CJ01A1] >gi|570995881|gb|ETP52621.1| hypothetical protein F442_02385 [Phytophthora parasitica P10297]) HSP 1 Score: 55.8398 bits (133), Expect = 1.242e-7 Identity = 31/88 (35.23%), Postives = 53/88 (60.23%), Query Frame = 0
Query: 51 LETVPNQLGTASLRLDTGAILSQTGQMDTPLGSEAAHTLYQILLDTGLILKAPLHHGEALRRIAVQFRSFQYVMTVSKDEVFIVKKTP 138
L TV Q GT L ++ G +LS TG++ G AA T+Y +L D+ +L A E L+R+ + F ++ YV+T+ ++V++VK++
Sbjct: 6 LRTVNGQTGTLVLDIN-GQVLSATGELRGTSGEIAAETIYSMLQDSSSVLDAS--QKEELQRMTITFPTYDYVVTLDAEQVYVVKRSS 90
BLAST of EWM26328.1 vs. NCBI_GenBank
Match: gi|570965478|gb|ETP28597.1| (hypothetical protein F442_22129, partial [Phytophthora parasitica P10297]) HSP 1 Score: 55.8398 bits (133), Expect = 1.603e-7 Identity = 31/88 (35.23%), Postives = 53/88 (60.23%), Query Frame = 0
Query: 51 LETVPNQLGTASLRLDTGAILSQTGQMDTPLGSEAAHTLYQILLDTGLILKAPLHHGEALRRIAVQFRSFQYVMTVSKDEVFIVKKTP 138
L TV Q GT L ++ G +LS TG++ G AA T+Y +L D+ +L A E L+R+ + F ++ YV+T+ ++V++VK++
Sbjct: 18 LRTVNGQTGTLVLDIN-GQVLSATGELRGTSGEIAAETIYSMLQDSSSVLDAS--QKEELQRMTITFPTYDYVVTLDAEQVYVVKRSS 102
BLAST of EWM26328.1 vs. NCBI_GenBank
Match: gi|470289607|ref|XP_004342907.1| (hypothetical protein CAOG_07834 [Capsaspora owczarzaki ATCC 30864] >gi|765557454|gb|KJE97730.1| hypothetical protein, variant [Capsaspora owczarzaki ATCC 30864]) HSP 1 Score: 55.8398 bits (133), Expect = 1.755e-7 Identity = 34/98 (34.69%), Postives = 56/98 (57.14%), Query Frame = 0
Query: 38 PHLTDPVWNMRPDLETVPNQLGTASLRLDTGAILSQTGQMDTPLGSEAAHTLYQILLDTGLILKAPLHHGEALRRIAVQFRSFQYVMTVSKDEVFIVK 135
P T V M+ +E +PN G+ +L L+ GA++S TG + SE A T++ +L DT +L E +R+++ F FQYV+T++ +F+VK
Sbjct: 13 PEDTADVAAMQGAIERIPNLTGSLTLDLN-GAVVSSTGDL-ADNASETASTIHNLLRDTRGVLTTG-DKTEPFKRLSLVFEKFQYVVTIAHSHIFVVK 107 The following BLAST results are available for this feature:
BLAST of EWM26328.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 7
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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