EWM26328.1, cds4346 (CDS) Nannochloropsis gaditana

Overview
NameEWM26328.1
Unique Namecds4346
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:369980..370411 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26328.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100078g12.7003.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:369980..370411 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM26328.1 vs. NCBI_GenBank
Match: gi|585108335|gb|EWM26328.1| (hypothetical protein Naga_100078g12 [Nannochloropsis gaditana])

HSP 1 Score: 295.049 bits (754), Expect = 2.776e-101
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 0
Query:    1 MPRVYNVHTCTCASIRLLISLPRLCRRTLPQSSPTSSPHLTDPVWNMRPDLETVPNQLGTASLRLDTGAILSQTGQMDTPLGSEAAHTLYQILLDTGLILKAPLHHGEALRRIAVQFRSFQYVMTVSKDEVFIVKKTPDDTRG 143
            MPRVYNVHTCTCASIRLLISLPRLCRRTLPQSSPTSSPHLTDPVWNMRPDLETVPNQLGTASLRLDTGAILSQTGQMDTPLGSEAAHTLYQILLDTGLILKAPLHHGEALRRIAVQFRSFQYVMTVSKDEVFIVKKTPDDTRG
Sbjct:    1 MPRVYNVHTCTCASIRLLISLPRLCRRTLPQSSPTSSPHLTDPVWNMRPDLETVPNQLGTASLRLDTGAILSQTGQMDTPLGSEAAHTLYQILLDTGLILKAPLHHGEALRRIAVQFRSFQYVMTVSKDEVFIVKKTPDDTRG 143          
BLAST of EWM26328.1 vs. NCBI_GenBank
Match: gi|325183327|emb|CCA17785.1| (AlNc14C40G3430 [Albugo laibachii Nc14])

HSP 1 Score: 57.7658 bits (138), Expect = 2.580e-8
Identity = 31/89 (34.83%), Postives = 46/89 (51.69%), Query Frame = 0
Query:   49 PDLETVPNQLGTASLRLDTGAILSQTGQMDTPLGSEAAHTLYQILLDTGLILKAPLHHGEALRRIAVQFRSFQYVMTVSKDEVFIVKKT 137
             DL+ VPNQ+G+  L    G ILS +G +D   G   A  LY +L D   +L+   H  E  +R  V   + +Y++T   + V+IV K 
Sbjct:    2 EDLQFVPNQIGSLILSRANGCILSASGTLDNTTGKRVASVLYSMLQDAANVLE---HSDEVFKRFTVTHPTNKYIVTSDTNRVYIVHKN 87          
BLAST of EWM26328.1 vs. NCBI_GenBank
Match: gi|669169163|ref|XP_008619930.1| (hypothetical protein SDRG_15532 [Saprolegnia diclina VS20] >gi|530728350|gb|EQC26592.1| hypothetical protein SDRG_15532 [Saprolegnia diclina VS20])

HSP 1 Score: 57.3806 bits (137), Expect = 4.390e-8
Identity = 33/87 (37.93%), Postives = 51/87 (58.62%), Query Frame = 0
Query:   55 PNQLGTASLRLDTGAILSQTGQMDTPLGSEAAHTLYQILLDTG--LILKAPLHHGEALRRIAVQFRSFQYVMTVSKDEVFIVKKTPD 139
            PNQ+G A + LD G+I+S  G +    G +A + +  +LLD G   ILKA     E L  I + F S++Y +++ +  ++IVK TPD
Sbjct:   13 PNQIGVAIVTLD-GSIVSAAGDLAGDEGVDACNAVRHMLLDVGNLSILKATDPQRELLESITIAFPSYEYSVSLDESHLYIVKSTPD 98          
BLAST of EWM26328.1 vs. NCBI_GenBank
Match: gi|675206023|ref|XP_008911896.1| (hypothetical protein PPTG_15884, partial [Phytophthora parasitica INRA-310] >gi|568088075|gb|ETN02939.1| hypothetical protein PPTG_15884, partial [Phytophthora parasitica INRA-310])

HSP 1 Score: 55.8398 bits (133), Expect = 1.226e-7
Identity = 31/88 (35.23%), Postives = 53/88 (60.23%), Query Frame = 0
Query:   51 LETVPNQLGTASLRLDTGAILSQTGQMDTPLGSEAAHTLYQILLDTGLILKAPLHHGEALRRIAVQFRSFQYVMTVSKDEVFIVKKTP 138
            L TV  Q GT  L ++ G +LS TG++    G  AA T+Y +L D+  +L A     E L+R+ + F ++ YV+T+  ++V++VK++ 
Sbjct:    5 LRTVNGQTGTLVLDIN-GQVLSATGELRGTSGEIAAETIYSMLQDSSSVLDAS--QKEELQRMTITFPTYDYVVTLDAEQVYVVKRSS 89          
BLAST of EWM26328.1 vs. NCBI_GenBank
Match: gi|675181525|ref|XP_008899647.1| (hypothetical protein PPTG_07234 [Phytophthora parasitica INRA-310] >gi|566031911|gb|ETI54822.1| hypothetical protein F443_02417 [Phytophthora parasitica P1569] >gi|567969599|gb|ETK94682.1| hypothetical protein L915_02297 [Phytophthora parasitica] >gi|567998000|gb|ETL48079.1| hypothetical protein L916_02257 [Phytophthora parasitica] >gi|568027206|gb|ETM01170.1| hypothetical protein L917_02194 [Phytophthora parasitica] >gi|568057697|gb|ETM54351.1| hypothetical protein L914_02287 [Phytophthora parasitica] >gi|568100315|gb|ETN15014.1| hypothetical protein PPTG_07234 [Phytophthora parasitica INRA-310] >gi|570335637|gb|ETO83585.1| hypothetical protein F444_02401 [Phytophthora parasitica P1976] >gi|570959680|gb|ETP24659.1| hypothetical protein F441_02368 [Phytophthora parasitica CJ01A1] >gi|570995881|gb|ETP52621.1| hypothetical protein F442_02385 [Phytophthora parasitica P10297])

HSP 1 Score: 55.8398 bits (133), Expect = 1.242e-7
Identity = 31/88 (35.23%), Postives = 53/88 (60.23%), Query Frame = 0
Query:   51 LETVPNQLGTASLRLDTGAILSQTGQMDTPLGSEAAHTLYQILLDTGLILKAPLHHGEALRRIAVQFRSFQYVMTVSKDEVFIVKKTP 138
            L TV  Q GT  L ++ G +LS TG++    G  AA T+Y +L D+  +L A     E L+R+ + F ++ YV+T+  ++V++VK++ 
Sbjct:    6 LRTVNGQTGTLVLDIN-GQVLSATGELRGTSGEIAAETIYSMLQDSSSVLDAS--QKEELQRMTITFPTYDYVVTLDAEQVYVVKRSS 90          
BLAST of EWM26328.1 vs. NCBI_GenBank
Match: gi|570965478|gb|ETP28597.1| (hypothetical protein F442_22129, partial [Phytophthora parasitica P10297])

HSP 1 Score: 55.8398 bits (133), Expect = 1.603e-7
Identity = 31/88 (35.23%), Postives = 53/88 (60.23%), Query Frame = 0
Query:   51 LETVPNQLGTASLRLDTGAILSQTGQMDTPLGSEAAHTLYQILLDTGLILKAPLHHGEALRRIAVQFRSFQYVMTVSKDEVFIVKKTP 138
            L TV  Q GT  L ++ G +LS TG++    G  AA T+Y +L D+  +L A     E L+R+ + F ++ YV+T+  ++V++VK++ 
Sbjct:   18 LRTVNGQTGTLVLDIN-GQVLSATGELRGTSGEIAAETIYSMLQDSSSVLDAS--QKEELQRMTITFPTYDYVVTLDAEQVYVVKRSS 102          
BLAST of EWM26328.1 vs. NCBI_GenBank
Match: gi|470289607|ref|XP_004342907.1| (hypothetical protein CAOG_07834 [Capsaspora owczarzaki ATCC 30864] >gi|765557454|gb|KJE97730.1| hypothetical protein, variant [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 55.8398 bits (133), Expect = 1.755e-7
Identity = 34/98 (34.69%), Postives = 56/98 (57.14%), Query Frame = 0
Query:   38 PHLTDPVWNMRPDLETVPNQLGTASLRLDTGAILSQTGQMDTPLGSEAAHTLYQILLDTGLILKAPLHHGEALRRIAVQFRSFQYVMTVSKDEVFIVK 135
            P  T  V  M+  +E +PN  G+ +L L+ GA++S TG +     SE A T++ +L DT  +L       E  +R+++ F  FQYV+T++   +F+VK
Sbjct:   13 PEDTADVAAMQGAIERIPNLTGSLTLDLN-GAVVSSTGDL-ADNASETASTIHNLLRDTRGVLTTG-DKTEPFKRLSLVFEKFQYVVTIAHSHIFVVK 107          
The following BLAST results are available for this feature:
BLAST of EWM26328.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 7
Match NameE-valueIdentityDescription
gi|585108335|gb|EWM26328.1|2.776e-101100.00hypothetical protein Naga_100078g12 [Nannochlorops... [more]
gi|325183327|emb|CCA17785.1|2.580e-834.83AlNc14C40G3430 [Albugo laibachii Nc14][more]
gi|669169163|ref|XP_008619930.1|4.390e-837.93hypothetical protein SDRG_15532 [Saprolegnia dicli... [more]
gi|675206023|ref|XP_008911896.1|1.226e-735.23hypothetical protein PPTG_15884, partial [Phytopht... [more]
gi|675181525|ref|XP_008899647.1|1.242e-735.23hypothetical protein PPTG_07234 [Phytophthora para... [more]
gi|570965478|gb|ETP28597.1|1.603e-735.23hypothetical protein F442_22129, partial [Phytopht... [more]
gi|470289607|ref|XP_004342907.1|1.755e-734.69hypothetical protein CAOG_07834 [Capsaspora owczar... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4356rna4356Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications