rna4353, rna4353 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4353
Unique Name	rna4353
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1352
Alignment location	CM002463.1:364162..365573 -

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Properties


Property Name	Value
Product	elongation factor ef-3
Orig transcript id	gnl\|cribi\|Naga_100078g16.6992.mrna
Orig protein id	gnl\|cribi\|Naga_100078g16.6992
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:364162..365573 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100078g16	gene4197	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4353	rna4353-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26317.1	cds4343	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:364162..365573-
coding sequence from alignment at CM002463.1:364162..365573-

mRNA sequence

>rna4353 ID=rna4353|Name=rna4353|organism=Nannochloropsis gaditana|type=mRNA|length=1352bp
TCCATCCACAGTGTCGCCCTCCACTAGTGCTATGTTATCATACGTGCGGC
TGTCCTCTTTTTCCTTCTCCCCGATCTCCAAGGGGATGGGAAGGTATTAT
AGAAGCCGTCATCTCTCCGCCTTGGGCGCCCCTCCTCGTCTCAGCCTCAA
GCCTGATGAGCCGCGACGATGTCACGTCCAACAACGTCGGACGCTTGCTG
CTACGCCACACTACGACATCAAAAAAGTGGGTGTGGTAGGCTTGGGGCTC
ATGGGACATGGTATTGGCCTGGTGAGCGCGCAGGCGGGCTACGAGGTGAT
AGCAGTTGAAGCTCAGGCACCAGCCTTGGAGTCCGGGAAGAAACGGATTG
ATAAGTCACTGAGCAAGATATTGAGTAAAGCGGTGGAGAAAGGGAAAATG
ACGTTGGAGGCAGCCGAGAAGGAGAAAGAAAAGGTGGAGCGACGCATCAC
CTACTCATTGGATTTGGCGGCCTTGAGAGACGCCGACCTCGTTGTCGAGG
CGATTGTGGAAAATCTAGATGTAAAGATCCCCTTCTACAAGCAGCTGGGC
AGCCTGGTGAAGCCCACTGCCATTTTCGGGAGCAACACCTCCTCCCTCAA
AATCGGCGACTTCGCGGCCCCGTCCGGACGCCCCCAGCAGTTCGTCGGCC
TCCATTTCTTCAACCCGGTGCAGCTCATGCGCCTGGTGGAGATCGTCCGC
TTGCACGAGACCGAGCCTGCGGTCTTCGAGACCGTGAGGGGGTACGTGGC
ACGGATCGGAAAGACGGCGGTCACGTGCCAGGACACGCCAGGCTTCATCG
TCAACCGCCTGTTGGTCCCGGCCTTGGTGCAGGCGATGCTCATGAAAGAG
AGGGGGGAGGCGAGCGTGGAGGACATCGACGTGGCCATGCAGCTAGGCGC
AGGACATCCCATGGGGCCTCTGCACCTGGCCGACTACATCGGGCTCGATA
CTTGCCTCTTCATTCTAGAAGGGTGGGTGAAAAAGTACCCAAATGAGCCA
GCCTTCATCGTCCCCTCCTCTCTTCGCGCGCTTGTGCAAGGTGGAAAATT
GGGGCGCAAGTCGGGGGAAGGCTTTTATGTGTGGGAGGGCGACAAGAAAG
TCAAGCCAGCCATGTGAGGTAGGAGGCTCGGAGGGAAGAAAGCCTTGTAG
CAGATACAGGCAGGGTGAGAAATCTAGTGAGCAGTCGCTGAGATGTAGGT
GAGAGGAGTGGGAGCGGATTAAGTAGGCATTCCGATTCTATCCGGGGGGT
GGGAAAGGCCAGAGGAGAGCGGCGCAACGAGCAATTTTGTCACGAACAGG
CGCACACATATTTCAGAGGGAAAAGAAAAATCAAACAGCGCCCTTTCACT
TC

protein sequence of rna4353

>rna4353-protein ID=rna4353-protein|Name=rna4353|organism=Nannochloropsis gaditana|type=polypeptide|length=437bp
MKGNLNDFVAKFPEKKSYFILTNEKVRFVFPEPGPLEGVKSLSKHILKMT
GVTFQYPTRDKPTVMDICLEVSRVSRVAVIGPNGAGKSTAIKLLIGELTP
SEGVITKHPNMRLAYVAQHAFFHLEKHLNETPAQYIMWRFAGNEDKESLD
LLNKKKEVDKEVTKYFIREGTTLCQCYSPAEEKLAVEPEAIINRHEDKKA
KTKEYEVKWRGKSTDCNLWVKRDVLLSMGAEKMVQKFDEKMAAEAGLQFK
PLTTSAIEKHLADFGIDPEDASHTLIKSLSGGQKIKVVMAACFWQNPHII
VLDEPTNYLDRDSLGALVQAIHDYKGGVIIISHNREFAGAVCQEKWIMDK
GRLRREGESVATREEEEVKEELGDKVVIDALGNEIKVNKQTTLSDKEKKK
EIKRIQKLITDGKKKKTISEDEILDLELKLEELKTAP

mRNA from alignment at CM002463.1:364162..365573-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4353 ID=rna4353|Name=rna4353|organism=Nannochloropsis gaditana|type=mRNA|length=1412bp|location=Sequence derived from alignment at CM002463.1:364162..365573- (Nannochloropsis gaditana)
ATGAAGGGCAACCTGAACGACTTCGTTGCCAAGTTCCCGGAGAAAAAGAG
CTACTTCATCCTCACCAACGAGAAGGTCCGCTTCGTCTTCCCCGAGCCCG
GGCCCCTGGAAGGCGTCAAGTCCCTCTCGAAGCACATCCTCAAGATGACG
GGCGTGACTTTCCAGTACCCGACGCGCGACAAGCCGACGGTCATGGACAT
CTGCCTGGAGGTCTCTCGCGTCTCCCGCGTGGCCGTGATCGGGCCCAACG
GGGCGGGTAAGTCTACGGCCATCAAGCTCTTGATCGGCGAGCTGACGCCG
TCGGAGGGTGTCATTACCAAGCACCCGAACATGCGCCTGGCCTACGTGGC
CCAGCACGCCTTCTTCCACCTGGAGAAGCACTTGAACGAGACGCCCGCCC
AGTACATCATGTGGCGGTTCGCGGGGAACGAGGACAAGGAGTCCCTGGAC
CTCCTGAACAAGAAGAAGGAGGTGGACAAGGAGGTGACCAAGTACTTCAT
CCGGGAAGGGACGACGCTCTGCCAGTGCTACTCCCCCGCGGAGGAGAAGC
TGGCGGTGGAGCCTGAGGCGATCATCAACCGGCACGAGGACAAGAAGGCC
AAGACGAAGGAGTACGAGGTGAAGTGGCGGGGCAAGTCCACCGACTGCAA
CCTGTGGGTCAAGCGAGACGTGCTCCTGTCCATGGGCGCCGAGAAAATGG
TGCAGAAATTCGACGAGAAGATGGCGGCGGAGGCGGGGCTCCAGTTCAAG
CCCCTGACCACTTCCGCGATCGAGAAGCACTTGGCCGACTTTGGGATCGA
TCCGGAGGATGCCTCCCACACCCTGATCAAGTCCCTCTCGGGCGGGCAGA
AGATCAAGGTGGTGATGGCCGCGTGCTTCTGGCAGAACCCGCACATCATC
GTCCTGGACGAGCCCACCAACTACCTGGACCGGGACTCCCTCGGCGCCTT
GGTGCAGGCCATTCACGACTACAAGGGGGGCGTCATCATCATCTCCCACA
ACCGAGAGTTCGCGGGGGCGGTCTGCCAAGAGAAGTGGATCATGGACAAG
GGCCGCTTGCGTCGGGAGGGGGAGTCAGTGGCCACCCGCGAGGAGGAGGA
GGTGAAGGAAGAGCTGGGTGACAAGGTGGTGATCGACGCGTTGGGAAATG
AGATCAAGGTACGTCATGGGAATCGGGCGACATATGGGACTGTCCGTTTG
TGTGTCGGCTTGGACTAAGTACAGCACACTCACACTCCGCATTTTTCTCG
CGATAGGTGAACAAGCAAACGACATTGTCAGACAAGGAGAAGAAGAAGGA
GATCAAGCGTATTCAAAAGCTGATTACGGATGGAAAGAAGAAGAAGACAA
TCAGCGAGGACGAAATTCTGGACTTGGAGTTGAAGCTGGAGGAGCTGAAG
ACGGCACCTTAA

Coding sequence (CDS) from alignment at CM002463.1:364162..365573-

>rna4353 ID=rna4353|Name=rna4353|organism=Nannochloropsis gaditana|type=CDS|length=2628bp|location=Sequence derived from alignment at CM002463.1:364162..365573- (Nannochloropsis gaditana)
GTGAACAAGCAAACGACATTGTCAGACAAGGAGAAGAAGAAGGAGATCAA
GCGTATTCAAAAGCTGATTACGGATGGAAAGAAGAAGAAGACAATCAGCG
AGGACGAAATTCTGGACTTGGAGTTGAAGCTGGAGGAGCTGAAGACGGCA
CCTTAAATGAAGGGCAACCTGAACGACTTCGTTGCCAAGTTCCCGGAGAA
AAAGAGCTACTTCATCCTCACCAACGAGAAGGTCCGCTTCGTCTTCCCCG
AGCCCGGGCCCCTGGAAGGCGTCAAGTCCCTCTCGAAGCACATCCTCAAG
ATGACGGGCGTGACTTTCCAGTACCCGACGCGCGACAAGCCGACGGTCAT
GGACATCTGCCTGGAGGTCTCTCGCGTCTCCCGCGTGGCCGTGATCGGGC
CCAACGGGGCGGGTAAGTCTACGGCCATCAAGCTCTTGATCGGCGAGCTG
ACGCCGTCGGAGGGTGTCATTACCAAGCACCCGAACATGCGCCTGGCCTA
CGTGGCCCAGCACGCCTTCTTCCACCTGGAGAAGCACTTGAACGAGACGC
CCGCCCAGTACATCATGTGGCGGTTCGCGGGGAACGAGGACAAGGAGTCC
CTGGACCTCCTGAACAAGAAGAAGGAGGTGGACAAGGAGGTGACCAAGTA
CTTCATCCGGGAAGGGACGACGCTCTGCCAGTGCTACTCCCCCGCGGAGG
AGAAGCTGGCGGTGGAGCCTGAGGCGATCATCAACCGGCACGAGGACAAG
AAGGCCAAGACGAAGGAGTACGAGGTGAAGTGGCGGGGCAAGTCCACCGA
CTGCAACCTGTGGGTCAAGCGAGACGTGCTCCTGTCCATGGGCGCCGAGA
AAATGGTGCAGAAATTCGACGAGAAGATGGCGGCGGAGGCGGGGCTCCAG
TTCAAGCCCCTGACCACTTCCGCGATCGAGAAGCACTTGGCCGACTTTGG
GATCGATCCGGAGGATGCCTCCCACACCCTGATCAAGTCCCTCTCGGGCG
GGCAGAAGATCAAGGTGGTGATGGCCGCGTGCTTCTGGCAGAACCCGCAC
ATCATCGTCCTGGACGAGCCCACCAACTACCTGGACCGGGACTCCCTCGG
CGCCTTGGTGCAGGCCATTCACGACTACAAGGGGGGCGTCATCATCATCT
CCCACAACCGAGAGTTCGCGGGGGCGGTCTGCCAAGAGAAGTGGATCATG
GACAAGGGCCGCTTGCGTCGGGAGGGGGAGTCAGTGGCCACCCGCGAGGA
GGAGGAGGTGAAGGAAGAGCTGGGTGACAAGGTGGTGATCGACGCGTTGG
GAAATGAGATCAAGGTGAACAAGCAAACGACATTGTCAGACAAGGAGAAG
AAGAAGGAGATCAAGCGTATTCAAAAGCTGATTACGGATGGAAAGAAGAA
GAAGACAATCAGCGAGGACGAAATTCTGGACTTGGAGTTGAAGCTGGAGG
AGCTGAAGACGGCACCTTAAATGAAGGGCAACCTGAACGACTTCGTTGCC
AAGTTCCCGGAGAAAAAGAGCTACTTCATCCTCACCAACGAGAAGGTCCG
CTTCGTCTTCCCCGAGCCCGGGCCCCTGGAAGGCGTCAAGTCCCTCTCGA
AGCACATCCTCAAGATGACGGGCGTGACTTTCCAGTACCCGACGCGCGAC
AAGCCGACGGTCATGGACATCTGCCTGGAGGTCTCTCGCGTCTCCCGCGT
GGCCGTGATCGGGCCCAACGGGGCGGGTAAGTCTACGGCCATCAAGCTCT
TGATCGGCGAGCTGACGCCGTCGGAGGGTGTCATTACCAAGCACCCGAAC
ATGCGCCTGGCCTACGTGGCCCAGCACGCCTTCTTCCACCTGGAGAAGCA
CTTGAACGAGACGCCCGCCCAGTACATCATGTGGCGGTTCGCGGGGAACG
AGGACAAGGAGTCCCTGGACCTCCTGAACAAGAAGAAGGAGGTGGACAAG
GAGGTGACCAAGTACTTCATCCGGGAAGGGACGACGCTCTGCCAGTGCTA
CTCCCCCGCGGAGGAGAAGCTGGCGGTGGAGCCTGAGGCGATCATCAACC
GGCACGAGGACAAGAAGGCCAAGACGAAGGAGTACGAGGTGAAGTGGCGG
GGCAAGTCCACCGACTGCAACCTGTGGGTCAAGCGAGACGTGCTCCTGTC
CATGGGCGCCGAGAAAATGGTGCAGAAATTCGACGAGAAGATGGCGGCGG
AGGCGGGGCTCCAGTTCAAGCCCCTGACCACTTCCGCGATCGAGAAGCAC
TTGGCCGACTTTGGGATCGATCCGGAGGATGCCTCCCACACCCTGATCAA
GTCCCTCTCGGGCGGGCAGAAGATCAAGGTGGTGATGGCCGCGTGCTTCT
GGCAGAACCCGCACATCATCGTCCTGGACGAGCCCACCAACTACCTGGAC
CGGGACTCCCTCGGCGCCTTGGTGCAGGCCATTCACGACTACAAGGGGGG
CGTCATCATCATCTCCCACAACCGAGAGTTCGCGGGGGCGGTCTGCCAAG
AGAAGTGGATCATGGACAAGGGCCGCTTGCGTCGGGAGGGGGAGTCAGTG
GCCACCCGCGAGGAGGAGGAGGTGAAGGAAGAGCTGGGTGACAAGGTGGT
GATCGACGCGTTGGGAAATGAGATCAAG

Synonyms

Publications