rna4349, rna4349 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4349
Unique Name	rna4349
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3021
Alignment location	CM002463.1:354728..355322 -

Link to JBrowse

Properties


Property Name	Value
Product	dynein light chain axonemal
Orig transcript id	gnl\|cribi\|Naga_100078g20.6994.mrna
Orig protein id	gnl\|cribi\|Naga_100078g20.6994
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002463.1	supercontig	CM002463.1:354728..355322 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100078g20	gene4193	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4349	rna4349-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM26319.1	cds4339	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002463.1:354728..355322-
coding sequence from alignment at CM002463.1:354728..355322-

mRNA sequence

>rna4349 ID=rna4349|Name=rna4349|organism=Nannochloropsis gaditana|type=mRNA|length=3021bp
CAACCACGAATTTCCAAACCAAGTCACGCTTACCGTGGTGGAATAGTTTC
ATGAGCTTCGTTTGAGGATGTTTCCTTAAAAAAGATGGCACATGCCCTTC
TTGATGTATCGTCCACATCAGGCAACATGATGCTGCCCGTGTTCCTCCTT
TGCCTTGAAGAAGGCCCTCGCTTTCAGACGGCCTGGAACATTTTCATCAG
TCTCATGTGATAGGGATGTCTACACACTCAGGCTTTCCTTATGTTAAGTT
GGGCAGAGTAGGGCTTTGTTTTTAAACATGCCTGTGACAAGTCCTGCAGC
TTCCGTGGAGGGAGAAAATTTGCGAACACGGCAGGTCGCACATCAGCACA
TGACAAAACAGAGAAGTAAGGCAACTGCTGCGCAAGCCATCGCCAACGCC
TTCGTTGCCTCCACACTGACCTGGCTACTTTGGAGTCTCTACGGCGTATT
GGCAGGCTCCCTCTTCGTGGACATCTTCTACCCACAGGCCTGGCACGTCT
CGGAGCACCGGCTTCTTCGCACCCTCAGCTATCTGTCCCGGCCCCTGGGC
GCCGTCCTCTTCGGGCACCTGGGTGACACGTGGGGTCGTACCAAGACGTT
GACCGTCTGCTTGGCCGTCATGGGGCTCGCCTCGGGCTGCATGGCCCTCC
TCCCCACCCATCAAGTCTGGGGCTGGGCCTCCTGGTACCTCCTTCTTGTC
CTTCACGCCCTCCAAGGCCTGGCCGTGGGCGGACAGTGGGGGGGATGCCT
CTTGCTCGCCTATGAATTCTGCCGGCATGACCGACACAAGGGCTTGGTCT
CCTCCCTCCCCCAAGCCGGACGAGCCCTCGGGTACATGCTCACGGCCCTC
ATCTCTGCGAGTCTGGACAAGGAGAAACCCCCGACAGCGGGAAGCCCCTC
CGGCGGTACAACTCTGCACTTGGCAGACAATGATCTGCGATGGCGATGGG
CCCATGGCTTTGCCGCTGGGCTTCTCCTCCTCGCCCTTCACCTCCGCCTG
CGTATTCCCGAGCCACGAGAGTTCCTGTACTTGAAGAAACACCGACGCCT
CCGGGCTTTCCCCTTGTTCCGGGCCTTGCGGGCACAACTGTGGAACATCA
TCTGGGCCCTAGGCGCGCTATGGGTGGACGGCGTGACGCAAGTCATGGTG
GTCGGCTGGGGCCTGCCCGCCCTCTTAACAGCTCACGGCATCTCCATGGA
GACCCTCCTGACCTCGCTCGCAATCGCCGTGTTTGTCCAGGCCGTTTTCA
TCGTGGTGGGAGGGTGGCTCGGAGATCGGCTAGGGCGCCGGAAGCTCTTC
TTCGTCGCCTCTATGAGCATGGCTCTGGGCACCGTCTTCTACTTTTATGC
CCTTTTTCGACTCTCCTCCCCCTCGCGCGCTTACCCCATCTACCTCGCCA
ACATCCTCTACCTCGGCATCGCCTACGGGACCCTCCAAGGCGTCTTCCCC
GCCTTGCTCGTTGAGATTTTCCCCGAAAATGTCCGTTTCTCCGGGGTCGC
GGTTCTCTACCAGGTCTCCCGCCTCTACTCCTCTGTGGCGTGGCCCTACG
CCTCACAGGCCTTGCTGAGGGCGTCGCGTGGAGCCAGGTTCAAGTTCTTG
GCCCTGGAGAATGGGGAGAATTTGACGGGACTAGCAATATTCGTGGCTTC
GGTGGCCGGTGTCTCGGCGATGAGTGTGCTGATGATCCAAATCTACTCCA
GCGGAGGCAGAGGGGAAGGAGTCTTACCATTCCCGTTGGTATCGAGGAGA
AGCAAGGTGCGAGAGTATGTTGGGGGAGGCATTCAGCACCAGCTGCAACA
AAAAGAGGAAATAATGAACGGGTCAAGAGAGGAGGGGGAGGGAGGAGGAG
TGAGACCGTTTGAGGAAGTTGAGGACAGCGAAGAAGGGGAGGGCGTAGGG
CTGGAAACATACGAGTGGAGGGGCTCAAGGAGGGGAAGACGACCTCCGGC
GGACGGAGTAGAAGAAAAGCTTGAACCCGATACCTTGAGCGGGCTCGAGG
GAGGGGAGGGTGAGATGATTGAGGAGGACGACTACAGTTTTGACGAAGAG
GAATACGAGGAGGATGAAGAGGACTCGGCAGGATCGGTCTTCTCAGATTT
CGACGAACCACCTATGCACGACCATTCAAGTCATCCCACACATGGGATGG
AGAATAGCACATATAGCGTCGCAAGGCATGTGTAAATGTGAGGACTTAGA
AAAGAGGTGTTTTAGGCGGCGTGGAGAAAACGACGATGAACGATGGAATG
GCTGTGAAATTATTGTCATTGCTCAATTAGATTGCTTGTGACGACTAGGT
ATGTGAGAACGAAGCTCTCCTGATCGAAGCCCAAAGTCACGTTGAGTCAT
AATGCCGGCTTAAACAAACCCACCGACGTCAATGCATGCGCTAGGGGACA
TATTCAAAGGACTCAACACAAAGCATTTCGAGGCGTGAACTTATCCACGT
GTATGGAGCTGATGAAAGCAGTAGACCGAGGAGCAAAGTTTCGGAGGAAA
AAGTGAAGGTACGAGTTATTTAAAGGCAAGCTTGTGTCTGTATGACACAT
AGTGCGAACATTTGTGATAGTCGTCGTCGGCAGACGTATCTCAGTGATTG
TAAATATACAGAAATATTGTGCAGGATGAGGAAAAGAGTGCCCTTCCGAC
AGGCAGACAGCCTCTGAGAAAAGCAGAAAAGTGACCTGGTATGAGGATGA
AGTCCGTAGCGCATATAAAGCAATGCATATGAATGTGAAAATCGGCATCG
GAAAAAAGGTCAAAGCTTGAATGCTGAAGTGGGACTTCGGTAGAAAGTTT
GCTTTCTTTTGAAATTTGCGCCGAAGTCACATTTTGTAACATAACACCCC
TAATGTCCCGATAAAGACATAAAGAAGATGTTGCTGCTGATAACTTATTT
CGAAGCCGAAGCCTTCACCAATGATAACGTGCCAGTTGTTACCAAATTTT
TTATCAAACGTAATCTAGTACAAGTTGGGGGCATGGCAGTATGAAATGTT
CGTGAGCCTTATATCCAGCCG

protein sequence of rna4349

>rna4349-protein ID=rna4349-protein|Name=rna4349|organism=Nannochloropsis gaditana|type=polypeptide|length=89bp
MTQPIIKQHDMASEMFSEAVELITMAVDKHAISKNYEAAAGMIKITFDKK
FGNNWHVIIGEGFGFEISYQQQHLLYVFIGTLGVLCYKM

mRNA from alignment at CM002463.1:354728..355322-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4349 ID=rna4349|Name=rna4349|organism=Nannochloropsis gaditana|type=mRNA|length=595bp|location=Sequence derived from alignment at CM002463.1:354728..355322- (Nannochloropsis gaditana)
ATGACACAGCCCATTATCAAGGTAAATTATAAAGATTTATTACAGGTGGT
GGACCTCGTACGCAAAGTTTTTTTTTTAAAACCTTTTATTGGCAGATGGC
TCTGCGTCATTTTATTTGTGAGGATGTTTTCTTGGTGAACAAGTCAATTT
CTGTTCTCACATAGGCTTATTAGTGGGCGCGCTATTTGGTTAACCGTCTC
TTTTCATCTCGTGCATCATACAGCAACATGATATGGCTTCTGAAATGTTC
TCCGAGGCGGTAGAGCTTATCACCATGGCCGTAGATAAGCATGCCATCTC
CAAGAACTACGAAGCAGCCGCCGGTATGATTAAGGTATGCAAAAAATAAA
CCTGAGACAGTGGCTTTTGATAATTTCATTATCTCCTCGGCTGGATATAA
GGCTCACGAACATTTCATACTGCCATGCCCCCAACTTGTACTAGATTACG
TTTGATAAAAAATTTGGTAACAACTGGCACGTTATCATTGGTGAAGGCTT
CGGCTTCGAAATAAGTTATCAGCAGCAACATCTTCTTTATGTCTTTATCG
GGACATTAGGGGTGTTATGTTACAAAATGTGACTTCGGCGCAAAT

Coding sequence (CDS) from alignment at CM002463.1:354728..355322-

>rna4349 ID=rna4349|Name=rna4349|organism=Nannochloropsis gaditana|type=CDS|length=810bp|location=Sequence derived from alignment at CM002463.1:354728..355322- (Nannochloropsis gaditana)
ATTACGTTTGATAAAAAATTTGGTAACAACTGGCACGTTATCATTGGTGA
AGGCTTCGGCTTCGAAATAAGTTATCAGCAGCAACATCTTCTTTATGTCT
TTATCGGGACATTAGGGGTGTTATGTTACAAAATGTGACAACATGATATG
GCTTCTGAAATGTTCTCCGAGGCGGTAGAGCTTATCACCATGGCCGTAGA
TAAGCATGCCATCTCCAAGAACTACGAAGCAGCCGCCGGTATGATTAAGA
TGACACAGCCCATTATCAAGATTACGTTTGATAAAAAATTTGGTAACAAC
TGGCACGTTATCATTGGTGAAGGCTTCGGCTTCGAAATAAGTTATCAGCA
GCAACATCTTCTTTATGTCTTTATCGGGACATTAGGGGTGTTATGTTACA
AAATGTGACAACATGATATGGCTTCTGAAATGTTCTCCGAGGCGGTAGAG
CTTATCACCATGGCCGTAGATAAGCATGCCATCTCCAAGAACTACGAAGC
AGCCGCCGGTATGATTAAGATGACACAGCCCATTATCAAGATTACGTTTG
ATAAAAAATTTGGTAACAACTGGCACGTTATCATTGGTGAAGGCTTCGGC
TTCGAAATAAGTTATCAGCAGCAACATCTTCTTTATGTCTTTATCGGGAC
ATTAGGGGTGTTATGTTACAAAATGTGACAACATGATATGGCTTCTGAAA
TGTTCTCCGAGGCGGTAGAGCTTATCACCATGGCCGTAGATAAGCATGCC
ATCTCCAAGAACTACGAAGCAGCCGCCGGTATGATTAAGATGACACAGCC
CATTATCAAG

Synonyms

Publications