EWM26319.1, cds4339 (CDS) Nannochloropsis gaditana

Overview
NameEWM26319.1
Unique Namecds4339
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:355302..355322 -
Alignment locationCM002463.1:354989..355099 -
Alignment locationCM002463.1:354741..354878 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM26319.1
Productdynein light chain axonemal
Orig transcript idgnl|cribi|Naga_100078g20.6994.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:355302..355322 -
CM002463.1supercontigCM002463.1:354989..355099 -
CM002463.1supercontigCM002463.1:354741..354878 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0003774motor activity
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0007017microtubule-based process
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005856cytoskeleton
GO:0005875microtubule associated complex
Vocabulary: INTERPRO
TermDefinition
IPR001372Dynein_light_chain_typ-1/2
Homology
BLAST of EWM26319.1 vs. NCBI_GenBank
Match: gi|585108326|gb|EWM26319.1| (dynein light chain axonemal [Nannochloropsis gaditana])

HSP 1 Score: 185.652 bits (470), Expect = 1.157e-59
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0
Query:    1 MTQPIIKQHDMASEMFSEAVELITMAVDKHAISKNYEAAAGMIKITFDKKFGNNWHVIIGEGFGFEISYQQQHLLYVFIGTLGVLCYKM 89
            MTQPIIKQHDMASEMFSEAVELITMAVDKHAISKNYEAAAGMIKITFDKKFGNNWHVIIGEGFGFEISYQQQHLLYVFIGTLGVLCYKM
Sbjct:    1 MTQPIIKQHDMASEMFSEAVELITMAVDKHAISKNYEAAAGMIKITFDKKFGNNWHVIIGEGFGFEISYQQQHLLYVFIGTLGVLCYKM 89          
BLAST of EWM26319.1 vs. NCBI_GenBank
Match: gi|669154060|ref|XP_008612592.1| (hypothetical protein SDRG_08480 [Saprolegnia diclina VS20] >gi|530735555|gb|EQC33797.1| hypothetical protein SDRG_08480 [Saprolegnia diclina VS20])

HSP 1 Score: 120.168 bits (300), Expect = 1.776e-33
Identity = 52/87 (59.77%), Postives = 71/87 (81.61%), Query Frame = 0
Query:    2 TQPIIKQHDMASEMFSEAVELITMAVDKHAISKNYEAAAGMIKITFDKKFGNNWHVIIGEGFGFEISYQQQHLLYVFIGTLGVLCYK 88
            ++P IK +DM +E+ +E VE+ITMAVDKH   KNYEAAA +IK + DKKFG+ WH  IGEG+GF+ISYQQ+H+LY+++G +G+L YK
Sbjct:   23 SRPFIKHNDMTAEVCTETVEIITMAVDKHVPVKNYEAAAQLIKQSMDKKFGSFWHCFIGEGYGFDISYQQRHMLYMYVGEIGILVYK 109          
BLAST of EWM26319.1 vs. NCBI_GenBank
Match: gi|813192676|ref|XP_012208220.1| (hypothetical protein SPRG_13829 [Saprolegnia parasitica CBS 223.65] >gi|641526696|gb|KDO21039.1| hypothetical protein SPRG_13829 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 119.783 bits (299), Expect = 2.441e-33
Identity = 52/87 (59.77%), Postives = 71/87 (81.61%), Query Frame = 0
Query:    2 TQPIIKQHDMASEMFSEAVELITMAVDKHAISKNYEAAAGMIKITFDKKFGNNWHVIIGEGFGFEISYQQQHLLYVFIGTLGVLCYK 88
            ++P IK +DM +E+ +E VE+ITMAVDKH   KNYEAAA +IK + DKKFG+ WH  IGEG+GF+ISYQQ+H+LY+++G +G+L YK
Sbjct:   23 SRPFIKHNDMTAEVCTETVEIITMAVDKHVPLKNYEAAAQLIKQSMDKKFGSFWHCFIGEGYGFDISYQQRHMLYMYVGEIGILVYK 109          
BLAST of EWM26319.1 vs. NCBI_GenBank
Match: gi|695371372|ref|XP_009514547.1| (hypothetical protein PHYSODRAFT_293265 [Phytophthora sojae] >gi|348687458|gb|EGZ27272.1| hypothetical protein PHYSODRAFT_293265 [Phytophthora sojae])

HSP 1 Score: 119.013 bits (297), Expect = 5.674e-33
Identity = 50/87 (57.47%), Postives = 71/87 (81.61%), Query Frame = 0
Query:    2 TQPIIKQHDMASEMFSEAVELITMAVDKHAISKNYEAAAGMIKITFDKKFGNNWHVIIGEGFGFEISYQQQHLLYVFIGTLGVLCYK 88
            ++P +K +DM +E+ +E +E+ITMA DKH   KNYEAAA +IK + DKKFG++WH  IGEG+GF+ISYQQ+H+LY+++G +GVL YK
Sbjct:   23 SRPHLKHNDMTAEVCTETIEIITMACDKHVPVKNYEAAAQLIKQSMDKKFGSSWHCFIGEGYGFDISYQQRHMLYLYVGDIGVLVYK 109          
BLAST of EWM26319.1 vs. NCBI_GenBank
Match: gi|1173933271|gb|OQR85107.1| (dynein light chain [Achlya hypogyna])

HSP 1 Score: 118.627 bits (296), Expect = 7.141e-33
Identity = 52/87 (59.77%), Postives = 71/87 (81.61%), Query Frame = 0
Query:    2 TQPIIKQHDMASEMFSEAVELITMAVDKHAISKNYEAAAGMIKITFDKKFGNNWHVIIGEGFGFEISYQQQHLLYVFIGTLGVLCYK 88
            ++P IK +DM +E+ +E VE+ITMAVDKH   KNYEAAA +IK + DKKFG+ WH  IGEG+GF+ISYQQ+H+LY+++G +G+L YK
Sbjct:   23 SRPHIKHNDMTAEVCTETVEIITMAVDKHVPLKNYEAAAQLIKQSMDKKFGSFWHCFIGEGYGFDISYQQRHMLYMYVGEIGILVYK 109          
BLAST of EWM26319.1 vs. NCBI_GenBank
Match: gi|1173941260|gb|OQR90473.1| (dynein light chain [Thraustotheca clavata])

HSP 1 Score: 118.627 bits (296), Expect = 7.380e-33
Identity = 52/87 (59.77%), Postives = 71/87 (81.61%), Query Frame = 0
Query:    2 TQPIIKQHDMASEMFSEAVELITMAVDKHAISKNYEAAAGMIKITFDKKFGNNWHVIIGEGFGFEISYQQQHLLYVFIGTLGVLCYK 88
            ++P IK +DM +E+ +E VE+ITMAVDKH   KNYEAAA +IK + DKKFG+ WH  IGEG+GF+ISYQQ+H+LY+++G +G+L YK
Sbjct:   23 SRPHIKHNDMTAEVCTETVEIITMAVDKHVPVKNYEAAAQLIKQSMDKKFGSFWHCFIGEGYGFDISYQQRHMLYMYVGEIGILVYK 109          
BLAST of EWM26319.1 vs. NCBI_GenBank
Match: gi|1214704779|gb|OWZ16581.1| (Dynein light chain [Phytophthora megakarya])

HSP 1 Score: 118.627 bits (296), Expect = 8.417e-33
Identity = 49/87 (56.32%), Postives = 71/87 (81.61%), Query Frame = 0
Query:    2 TQPIIKQHDMASEMFSEAVELITMAVDKHAISKNYEAAAGMIKITFDKKFGNNWHVIIGEGFGFEISYQQQHLLYVFIGTLGVLCYK 88
            ++P +K +DM +E+ +E +E+ITMA DKH   KNYEAAA +IK + DKKFG++WH  IGEG+GF++SYQQ+H+LY+++G +GVL YK
Sbjct:   23 SRPHLKHNDMTAEVCTETIEIITMACDKHVPVKNYEAAAQLIKQSMDKKFGSSWHCFIGEGYGFDVSYQQRHMLYLYVGEIGVLVYK 109          
BLAST of EWM26319.1 vs. NCBI_GenBank
Match: gi|1214686673|gb|OWZ03243.1| (Dynein light chain [Phytophthora megakarya])

HSP 1 Score: 118.627 bits (296), Expect = 8.417e-33
Identity = 50/87 (57.47%), Postives = 71/87 (81.61%), Query Frame = 0
Query:    2 TQPIIKQHDMASEMFSEAVELITMAVDKHAISKNYEAAAGMIKITFDKKFGNNWHVIIGEGFGFEISYQQQHLLYVFIGTLGVLCYK 88
            ++P +K +DM +E+ +E +E+ITMA DKH   KNYEAAA +IK + DKKFG++WH  IGEG+GF+ISYQQ+H+LY+++G +GVL YK
Sbjct:   23 SRPHLKHNDMTAEVCNETIEIITMACDKHVPVKNYEAAAQLIKQSMDKKFGSSWHCFIGEGYGFDISYQQRHMLYLYVGEIGVLVYK 109          
BLAST of EWM26319.1 vs. NCBI_GenBank
Match: gi|568053762|gb|ETM50578.1| (hypothetical protein L914_05394, partial [Phytophthora parasitica] >gi|570955583|gb|ETP20714.1| hypothetical protein F441_05591, partial [Phytophthora parasitica CJ01A1])

HSP 1 Score: 118.627 bits (296), Expect = 1.685e-32
Identity = 50/87 (57.47%), Postives = 70/87 (80.46%), Query Frame = 0
Query:    2 TQPIIKQHDMASEMFSEAVELITMAVDKHAISKNYEAAAGMIKITFDKKFGNNWHVIIGEGFGFEISYQQQHLLYVFIGTLGVLCYK 88
            ++P +K +DM +E+  E +E+ITMA DKH   KNYEAAA +IK + DKKFG++WH  IGEG+GF+ISYQQ+H+LY+++G +GVL YK
Sbjct:   47 SRPHLKHNDMTAEVCMETIEIITMACDKHVPVKNYEAAAQLIKQSMDKKFGSSWHCFIGEGYGFDISYQQRHMLYLYVGEIGVLVYK 133          
BLAST of EWM26319.1 vs. NCBI_GenBank
Match: gi|566028036|gb|ETI50947.1| (hypothetical protein F443_05577, partial [Phytophthora parasitica P1569] >gi|570990771|gb|ETP48657.1| hypothetical protein F442_05623, partial [Phytophthora parasitica P10297])

HSP 1 Score: 118.242 bits (295), Expect = 1.852e-32
Identity = 50/87 (57.47%), Postives = 70/87 (80.46%), Query Frame = 0
Query:    2 TQPIIKQHDMASEMFSEAVELITMAVDKHAISKNYEAAAGMIKITFDKKFGNNWHVIIGEGFGFEISYQQQHLLYVFIGTLGVLCYK 88
            ++P +K +DM +E+  E +E+ITMA DKH   KNYEAAA +IK + DKKFG++WH  IGEG+GF+ISYQQ+H+LY+++G +GVL YK
Sbjct:   42 SRPHLKHNDMTAEVCMETIEIITMACDKHVPVKNYEAAAQLIKQSMDKKFGSSWHCFIGEGYGFDISYQQRHMLYLYVGEIGVLVYK 128          
The following BLAST results are available for this feature:
BLAST of EWM26319.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108326|gb|EWM26319.1|1.157e-59100.00dynein light chain axonemal [Nannochloropsis gadit... [more]
gi|669154060|ref|XP_008612592.1|1.776e-3359.77hypothetical protein SDRG_08480 [Saprolegnia dicli... [more]
gi|813192676|ref|XP_012208220.1|2.441e-3359.77hypothetical protein SPRG_13829 [Saprolegnia paras... [more]
gi|695371372|ref|XP_009514547.1|5.674e-3357.47hypothetical protein PHYSODRAFT_293265 [Phytophtho... [more]
gi|1173933271|gb|OQR85107.1|7.141e-3359.77dynein light chain [Achlya hypogyna][more]
gi|1173941260|gb|OQR90473.1|7.380e-3359.77dynein light chain [Thraustotheca clavata][more]
gi|1214704779|gb|OWZ16581.1|8.417e-3356.32Dynein light chain [Phytophthora megakarya][more]
gi|1214686673|gb|OWZ03243.1|8.417e-3357.47Dynein light chain [Phytophthora megakarya][more]
gi|568053762|gb|ETM50578.1|1.685e-3257.47hypothetical protein L914_05394, partial [Phytopht... [more]
gi|566028036|gb|ETI50947.1|1.852e-3257.47hypothetical protein F443_05577, partial [Phytopht... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4349rna4349Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications