EWM26319.1, cds4339 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM26319.1 vs. NCBI_GenBank
Match: gi|585108326|gb|EWM26319.1| (dynein light chain axonemal [Nannochloropsis gaditana]) HSP 1 Score: 185.652 bits (470), Expect = 1.157e-59 Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0
Query: 1 MTQPIIKQHDMASEMFSEAVELITMAVDKHAISKNYEAAAGMIKITFDKKFGNNWHVIIGEGFGFEISYQQQHLLYVFIGTLGVLCYKM 89
MTQPIIKQHDMASEMFSEAVELITMAVDKHAISKNYEAAAGMIKITFDKKFGNNWHVIIGEGFGFEISYQQQHLLYVFIGTLGVLCYKM
Sbjct: 1 MTQPIIKQHDMASEMFSEAVELITMAVDKHAISKNYEAAAGMIKITFDKKFGNNWHVIIGEGFGFEISYQQQHLLYVFIGTLGVLCYKM 89
BLAST of EWM26319.1 vs. NCBI_GenBank
Match: gi|669154060|ref|XP_008612592.1| (hypothetical protein SDRG_08480 [Saprolegnia diclina VS20] >gi|530735555|gb|EQC33797.1| hypothetical protein SDRG_08480 [Saprolegnia diclina VS20]) HSP 1 Score: 120.168 bits (300), Expect = 1.776e-33 Identity = 52/87 (59.77%), Postives = 71/87 (81.61%), Query Frame = 0
Query: 2 TQPIIKQHDMASEMFSEAVELITMAVDKHAISKNYEAAAGMIKITFDKKFGNNWHVIIGEGFGFEISYQQQHLLYVFIGTLGVLCYK 88
++P IK +DM +E+ +E VE+ITMAVDKH KNYEAAA +IK + DKKFG+ WH IGEG+GF+ISYQQ+H+LY+++G +G+L YK
Sbjct: 23 SRPFIKHNDMTAEVCTETVEIITMAVDKHVPVKNYEAAAQLIKQSMDKKFGSFWHCFIGEGYGFDISYQQRHMLYMYVGEIGILVYK 109
BLAST of EWM26319.1 vs. NCBI_GenBank
Match: gi|813192676|ref|XP_012208220.1| (hypothetical protein SPRG_13829 [Saprolegnia parasitica CBS 223.65] >gi|641526696|gb|KDO21039.1| hypothetical protein SPRG_13829 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 119.783 bits (299), Expect = 2.441e-33 Identity = 52/87 (59.77%), Postives = 71/87 (81.61%), Query Frame = 0
Query: 2 TQPIIKQHDMASEMFSEAVELITMAVDKHAISKNYEAAAGMIKITFDKKFGNNWHVIIGEGFGFEISYQQQHLLYVFIGTLGVLCYK 88
++P IK +DM +E+ +E VE+ITMAVDKH KNYEAAA +IK + DKKFG+ WH IGEG+GF+ISYQQ+H+LY+++G +G+L YK
Sbjct: 23 SRPFIKHNDMTAEVCTETVEIITMAVDKHVPLKNYEAAAQLIKQSMDKKFGSFWHCFIGEGYGFDISYQQRHMLYMYVGEIGILVYK 109
BLAST of EWM26319.1 vs. NCBI_GenBank
Match: gi|695371372|ref|XP_009514547.1| (hypothetical protein PHYSODRAFT_293265 [Phytophthora sojae] >gi|348687458|gb|EGZ27272.1| hypothetical protein PHYSODRAFT_293265 [Phytophthora sojae]) HSP 1 Score: 119.013 bits (297), Expect = 5.674e-33 Identity = 50/87 (57.47%), Postives = 71/87 (81.61%), Query Frame = 0
Query: 2 TQPIIKQHDMASEMFSEAVELITMAVDKHAISKNYEAAAGMIKITFDKKFGNNWHVIIGEGFGFEISYQQQHLLYVFIGTLGVLCYK 88
++P +K +DM +E+ +E +E+ITMA DKH KNYEAAA +IK + DKKFG++WH IGEG+GF+ISYQQ+H+LY+++G +GVL YK
Sbjct: 23 SRPHLKHNDMTAEVCTETIEIITMACDKHVPVKNYEAAAQLIKQSMDKKFGSSWHCFIGEGYGFDISYQQRHMLYLYVGDIGVLVYK 109
BLAST of EWM26319.1 vs. NCBI_GenBank
Match: gi|1173933271|gb|OQR85107.1| (dynein light chain [Achlya hypogyna]) HSP 1 Score: 118.627 bits (296), Expect = 7.141e-33 Identity = 52/87 (59.77%), Postives = 71/87 (81.61%), Query Frame = 0
Query: 2 TQPIIKQHDMASEMFSEAVELITMAVDKHAISKNYEAAAGMIKITFDKKFGNNWHVIIGEGFGFEISYQQQHLLYVFIGTLGVLCYK 88
++P IK +DM +E+ +E VE+ITMAVDKH KNYEAAA +IK + DKKFG+ WH IGEG+GF+ISYQQ+H+LY+++G +G+L YK
Sbjct: 23 SRPHIKHNDMTAEVCTETVEIITMAVDKHVPLKNYEAAAQLIKQSMDKKFGSFWHCFIGEGYGFDISYQQRHMLYMYVGEIGILVYK 109
BLAST of EWM26319.1 vs. NCBI_GenBank
Match: gi|1173941260|gb|OQR90473.1| (dynein light chain [Thraustotheca clavata]) HSP 1 Score: 118.627 bits (296), Expect = 7.380e-33 Identity = 52/87 (59.77%), Postives = 71/87 (81.61%), Query Frame = 0
Query: 2 TQPIIKQHDMASEMFSEAVELITMAVDKHAISKNYEAAAGMIKITFDKKFGNNWHVIIGEGFGFEISYQQQHLLYVFIGTLGVLCYK 88
++P IK +DM +E+ +E VE+ITMAVDKH KNYEAAA +IK + DKKFG+ WH IGEG+GF+ISYQQ+H+LY+++G +G+L YK
Sbjct: 23 SRPHIKHNDMTAEVCTETVEIITMAVDKHVPVKNYEAAAQLIKQSMDKKFGSFWHCFIGEGYGFDISYQQRHMLYMYVGEIGILVYK 109
BLAST of EWM26319.1 vs. NCBI_GenBank
Match: gi|1214704779|gb|OWZ16581.1| (Dynein light chain [Phytophthora megakarya]) HSP 1 Score: 118.627 bits (296), Expect = 8.417e-33 Identity = 49/87 (56.32%), Postives = 71/87 (81.61%), Query Frame = 0
Query: 2 TQPIIKQHDMASEMFSEAVELITMAVDKHAISKNYEAAAGMIKITFDKKFGNNWHVIIGEGFGFEISYQQQHLLYVFIGTLGVLCYK 88
++P +K +DM +E+ +E +E+ITMA DKH KNYEAAA +IK + DKKFG++WH IGEG+GF++SYQQ+H+LY+++G +GVL YK
Sbjct: 23 SRPHLKHNDMTAEVCTETIEIITMACDKHVPVKNYEAAAQLIKQSMDKKFGSSWHCFIGEGYGFDVSYQQRHMLYLYVGEIGVLVYK 109
BLAST of EWM26319.1 vs. NCBI_GenBank
Match: gi|1214686673|gb|OWZ03243.1| (Dynein light chain [Phytophthora megakarya]) HSP 1 Score: 118.627 bits (296), Expect = 8.417e-33 Identity = 50/87 (57.47%), Postives = 71/87 (81.61%), Query Frame = 0
Query: 2 TQPIIKQHDMASEMFSEAVELITMAVDKHAISKNYEAAAGMIKITFDKKFGNNWHVIIGEGFGFEISYQQQHLLYVFIGTLGVLCYK 88
++P +K +DM +E+ +E +E+ITMA DKH KNYEAAA +IK + DKKFG++WH IGEG+GF+ISYQQ+H+LY+++G +GVL YK
Sbjct: 23 SRPHLKHNDMTAEVCNETIEIITMACDKHVPVKNYEAAAQLIKQSMDKKFGSSWHCFIGEGYGFDISYQQRHMLYLYVGEIGVLVYK 109
BLAST of EWM26319.1 vs. NCBI_GenBank
Match: gi|568053762|gb|ETM50578.1| (hypothetical protein L914_05394, partial [Phytophthora parasitica] >gi|570955583|gb|ETP20714.1| hypothetical protein F441_05591, partial [Phytophthora parasitica CJ01A1]) HSP 1 Score: 118.627 bits (296), Expect = 1.685e-32 Identity = 50/87 (57.47%), Postives = 70/87 (80.46%), Query Frame = 0
Query: 2 TQPIIKQHDMASEMFSEAVELITMAVDKHAISKNYEAAAGMIKITFDKKFGNNWHVIIGEGFGFEISYQQQHLLYVFIGTLGVLCYK 88
++P +K +DM +E+ E +E+ITMA DKH KNYEAAA +IK + DKKFG++WH IGEG+GF+ISYQQ+H+LY+++G +GVL YK
Sbjct: 47 SRPHLKHNDMTAEVCMETIEIITMACDKHVPVKNYEAAAQLIKQSMDKKFGSSWHCFIGEGYGFDISYQQRHMLYLYVGEIGVLVYK 133
BLAST of EWM26319.1 vs. NCBI_GenBank
Match: gi|566028036|gb|ETI50947.1| (hypothetical protein F443_05577, partial [Phytophthora parasitica P1569] >gi|570990771|gb|ETP48657.1| hypothetical protein F442_05623, partial [Phytophthora parasitica P10297]) HSP 1 Score: 118.242 bits (295), Expect = 1.852e-32 Identity = 50/87 (57.47%), Postives = 70/87 (80.46%), Query Frame = 0
Query: 2 TQPIIKQHDMASEMFSEAVELITMAVDKHAISKNYEAAAGMIKITFDKKFGNNWHVIIGEGFGFEISYQQQHLLYVFIGTLGVLCYK 88
++P +K +DM +E+ E +E+ITMA DKH KNYEAAA +IK + DKKFG++WH IGEG+GF+ISYQQ+H+LY+++G +GVL YK
Sbjct: 42 SRPHLKHNDMTAEVCMETIEIITMACDKHVPVKNYEAAAQLIKQSMDKKFGSSWHCFIGEGYGFDISYQQRHMLYLYVGEIGVLVYK 128 The following BLAST results are available for this feature:
BLAST of EWM26319.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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