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Properties
| Property Name | Value |
| Product | shikimate transporter 3 |
| Orig transcript id | gnl|cribi|Naga_100078g21.7011.mrna |
| Orig protein id | gnl|cribi|Naga_100078g21.7011 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| CM002463.1 | supercontig | CM002463.1:351404..354935 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4348 ID=rna4348|Name=rna4348|organism=Nannochloropsis gaditana|type=mRNA|length=2587bp ACACGATACACTATCTCAAACAGCACTGTATGCCCAACGAAAGGGGTTGT CCCTCCGGATTGGCCGGATCGTCTGCCATGCCTCAAGACCAAAGTGGCAT ACCGGTCAATGAAGTTAGCCCCTTTTCGTCAAATTCTTCCCAGCCTATAG AAGAGATGACTCCAATACGCCCACAAAGTAATTCTCGACCACACTATGAG CAAACCGGCGGGCTTCCAGGCAACGACGTACAAAAGCCTTCTCTAAGGCC AGAAACGGAGAACCAACAAAATCTTTTTTACGTTGATCTGACAGTGCGCA AAGGCTCCCGTCTCGAAACCTCTCAAACAAATGTGATCGATAGTTCTTCC TCTAACAGAACAACACGACATTTTCCCATATATGCAGCGCATACACTTAA GAGCACCACTCGTATTTTCATCCTTGCTTTCCTGCTGCCCTTAGTCATGG AACGAGGTCCCACGCTCGATAGTCCTGGCTTGCTTCAGGGTCACCTCTTC GTACGAGAACCCCTAAGCATAGTTTACATGTGCTACTTGGTCATCATCGC TGTATTTACCCCGTTTTGGGGGGCCCTCTATGATGTTCTGAGCGCCGGGA GCAAAAGTCATGCGTTGGTCTTTGTCTTTCTGGCGGCTTCGTGTGTGGGC CCGGTCGTGGCTTTCGTTCTACTCTCGCCACCTTCTCCTGCAAACAGGCA GCACGTGTCGTGGACCGCCGTGGTGGCTGTGGGGGGCGGGATGATTGTTG CAGCCGAAACTTTGACGGGATTTCTTCTGGCAGATTTGAGCCACATGCAC TCGCGACCTTACAGTGATGCCGCTGCCCTTCTGAACGGGAAGGCAAGCTT GGTGGGCGTAGGCCTCGCCACCCTCCTTGTCGGAGCTCCTAATCTGATAC TGTCCATGGCGCTGGGGACGAATCCACAAACCACTACGCGATACGCATGC ATCTCGACTGTCCTGGTCAACCTGACCGCCAGTCTCTGTATTATGTTTGC GCGATTATGTTTCTCGTGGGATGGAATAAATATGAAAAGAACGCAGCGAC GACAGCAAGTGGTGGTCAGCGCCTCCTCTTCGAGTCGACCCCGCTCTGGA GCTGGCACCTCTGAAGGTCACGAAACCCCGCAAGGGGATGTGCGGACGCC TAATTTCGGCATGGCAGCCTGTTTTCGTGCTCTGCGCCCTGGCGCCCTGG CCTGTGTCGTCTCTCTCAGCCCTCCCTTCATTGTGCGATTCCTGTTCGTG CGCATGTTCTACCAGGGAGGCATTCGCTGCCTCTCGTATCTTGCCACTAC CTACATTCTACAAAGCTTAGACTTGAAAATAGACATCGCATGCAAGGCGG TTGTTGTAGCTTTTGCCACCTCCCTCCTCGGTATGAGCTTGACGCTAGGG TATCTTTCCGCTCAATACTCCCGAGTACAGAAGCAGCAGGACGTCTCTCG GCTCCGTCGTGCGTCCTCCGCCTCGACAGCTTCGGCGCTTGGCGCAGCGA TTGCAGCGGCACGTGTGGAACAGGACCTCACGCCGTCATTTGCTGAAGAG TTCCGCGCACGCCCTGACCCGTTGGACGCACCCGAACTCCCTCCACTAGG TATCGCGTTGGCGGTTTTGATTGTCGCTTGTGCGGCCGCCCCCACAGACG TAGCAGATTCCACAGATCCTTTGAGCGCCTTTTCGCGGGATGAGGGGATG CTTTATTCCATCGCCGGCATTGTTGGTTTCTGCGTGGGGTTTATATCTAC CTACGAAAAAGGCATCTTAGCCAGCACAATATGGCCAAACAGCTCCCAAC AACAGACTGCGATGGTGACACAAGTAGGGGTGGGCACCTTCTGCGGGATA TTGACTGCATCAAGCGTCGTCCTCGAGTGGCTCCCCACAGTCTTATTCGC GATTGTCCCCTCACAAGCTCTTCCCTCGGCGACGTGGACGTTGTCGCTCT ACTTGGGCCTCTGCCTACTCTTGTTCGCCCTCTGCATGGTGTGGTCGCAC CTCAAAGAGAAGAATCGGGGCGCAGCAAGAAGGGGTAGACTATCTTTCTC CGGTGCAGGATCGGAGGCGAACTCGAGAGATCAAACCGAGCAGACTGTAA GCGAGCGGGTGTCCGGCTTCCTCTTGCGGTCTCTGCCCTCCCACCTGTCC ACCATCATCGAGTCGCCAGGGGGACAGAGGGAACGGGACAGCACGTGCTC GACAGTCATGCCTGCGTCCTTCTCTACGGGTGCGTCGTGAGAATCATTAA AATTTAAGGGTGCTGGGGGGGGAAGATGCTGGGATGACGGAGACAGGGGA AGGACAGTAATCTGAGTGGGGGTTATAATGTTTGTCGTTTGAGCATGATG ATTCTGGTAGAATGCATGACAGAGGGGACTCAATGAAATGTACAGAATGA TGCATAGTAAAAGCCAATGCGTGTGGGCGGGAGTCATGCAGTAGCCGCTT CTGAGTCCTGATCGCTCAATCAGTCGTCGCTAGAGCTCGACCACAATTGA CAGAAGTGCCGGGGAAGGACCTTCAAATATAACAAAGAATATGCCAAACG AAAGCAATTAAAGTCGTTACCAAGTTATGAAACGCGC back to topprotein sequence of rna4348 >rna4348-protein ID=rna4348-protein|Name=rna4348|organism=Nannochloropsis gaditana|type=polypeptide|length=635bp MPVTSPAASVEGENLRTRQVAHQHMTKQRSKATAAQAIANAFVASTLTWL LWSLYGVLAGSLFVDIFYPQAWHVSEHRLLRTLSYLSRPLGAVLFGHLGD TWGRTKTLTVCLAVMGLASGCMALLPTHQVWGWASWYLLLVLHALQGLAV GGQWGGCLLLAYEFCRHDRHKGLVSSLPQAGRALGYMLTALISASLDKEK PPTAGSPSGGTTLHLADNDLRWRWAHGFAAGLLLLALHLRLRIPEPREFL YLKKHRRLRAFPLFRALRAQLWNIIWALGALWVDGVTQVMVVGWGLPALL TAHGISMETLLTSLAIAVFVQAVFIVVGGWLGDRLGRRKLFFVASMSMAL GTVFYFYALFRLSSPSRAYPIYLANILYLGIAYGTLQGVFPALLVEIFPE NVRFSGVAVLYQVSRLYSSVAWPYASQALLRASRGARFKFLALENGENLT GLAIFVASVAGVSAMSVLMIQIYSSGGRGEGVLPFPLVSRRSKVREYVGG GIQHQLQQKEEIMNGSREEGEGGGVRPFEEVEDSEEGEGVGLETYEWRGS RRGRRPPADGVEEKLEPDTLSGLEGGEGEMIEEDDYSFDEEEYEEDEEDS AGSVFSDFDEPPMHDHSSHPTHGMENSTYSVARHV back to topmRNA from alignment at CM002463.1:351404..354935+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4348 ID=rna4348|Name=rna4348|organism=Nannochloropsis gaditana|type=mRNA|length=3532bp|location=Sequence derived from alignment at CM002463.1:351404..354935+ (Nannochloropsis gaditana) CAACCACGAATTTCCAAACCAAGTCACGCTTACCGTGGTGGAATAGTTTC
ATGAGCTTCGTTTGAGGATGTTTCCTTAAAAAAGATGGCACATGCCCTTC
TTGATGTATCGTCCACATCAGGCAACATGATGCTGCCCgtgttcctcctt
tgccttgaAGAAGGCCCTCGCTTTCAGACGGCCTGGAACATTTTCATCAG
TCTCATGTGATAGGGATGTCTACACACTCAGGCTTTCCTTATGTTAAGTT
GGGCAGAGTAGGGCTTTGTTTTTAAACATGCCTGTGACAAGTCCTGCAGC
TtccgtggagggagaaaatttGCGAACACGGCAGGTCGCACATCAGCACA
TGACAAAACAGGTATGAACCGTCCGTGCCAAGGAAGTCTTGAATAAGGTC
ACTTTGGAATGTTTTTGCCGGAGTACTTGCTTAAATGATTGTCGTTAAGC
TCACAGTGTTCATTGATGTACTTAAGTGACATAAATCCGCTTGAATGGCC
TCATCAGCAACATCCTGACTATTTActtcccttgtcctcgaCCACGATCT
CTCACCTCATTCCACCAAATTATCATTTCGACATCCATGTGTGCTTGAAA
TCATCTTCTCCTCTAAGGTGTAATTGACGAAGTGTTCGCTTACCTTGTGT
CGGATATGTTGCAGAATAAGAGCCAGTCTATCgtgccacccttcctcctt
gacggCCTGTCCTAATTTTTTGATCAGATTGTGCCCTTTCTAATCCAATC
CTCACCACGGATACAATGGTGTTATATTGCTTCAATGTCTTGGATTCCTC
AGGCACACAAGCGCCAAAGTGCTCTGTTTTATGATccactttcttcctcc
ccttgaccCCCAACTCCTACAGAGAAGTAAGGCAACTGCTGCGCAAGCCA
TCGCCAACGCCTTCGTTGCCTCCACACTGACCTGGCTACTTTGGAGTCTC
TACGGCGTATTGGCAGGCTCCCTCTTCGTGGACATCTTCTACCCACAGGC
CTGGCACGTCTCGGAGCACCGGCTTCTTCGCACCCTCAGCTATCTGTCCC
GGCCCCTGGGCGCCGTCCTCTTCGGGCACCTGGGTGACACGTGGGGTCGT
ACCAAGACGTTGACCGTCTGCTTGGCCGTCATGGGGCTCGCCTCGGGCTG
catggccctcctccccacccatcAAGTCTGGGGCTGGGCCTCCTGgtacc
tccttcttgtccttcacgccctccaaggcctggccgtgggcggACAGTGG
GGGGGATGCCTCTTGCTCGCCTATGAATTCTGCCGGCATGACCGACACAA
GGGCttggtctcctccctcccccaagcCGGACGAGCCCTCGGGTACATGC
TCACGGCCCTCATCTCTGCGAGtctggacaaggagaaaCCCCCGACAGCG
GGAAGCCCCTCCGGCGGTACAACTCTGCACTTGGCAGACAATGATCTGCG
ATGGCGATGGGCCCATGGCTTTGCCGCtgggcttctcctcctcgcccttc
accTCCGCCTGCGTATTCCCGAGCCACGAGAGTTCCTGTACTTGAAGAAA
CACCGACGCCTCCGGGCTTTCCCCTTGTTCCGGGCCTTGCGGGCACAACT
GTGGAACATCATCTGGGCCCTAGGCGCGCTATGGGTGGACGGCGTGACGC
AAGTCATGGTGGTCGGCTGGggcctgcccgccctcttAACAGCTCACGGC
ATCTCCATGGAGACCCTCCTGACCTCGCTCGCAATCGCCGTGTTTGTCCA
GGCCGTTTTCAtcgtggtgggagggtggcTCGGAGATCGGCTAGGGCGCC
GGaagctcttcttcgtcgcctCTATGAGCATGGCTCTGGGCACCGTCTTC
TACTTTTATGCCCTTTTTCgactctcctccccctcgcgcGCTTACCCCAT
CTACCTCGCCAACATCCTCTACCTCGGCATCGCCTACGGGACCCTCCAAG
gcgtcttccccgccttgctcGTTGAGATTTTCCCCGAAAATGTCCGTTTC
TCCGGGGTCGCGGTTCTCTACCAGGTCTCCCGCCTCTACTCCTCTGTGGC
GTGGCCCTACGCCTCACAGGCCTTGCTGAGGGCGTCGCGTGGAGCCAGGT
TCAAGTTCTTGGCCCTGGAGAATGGGGAGAATTTGACGGGACTAGCAATA
TTCGTGGCTTCGGTGGCCGGTGTCTCGGCGATGAGTGTGCTGATGATCCA
AATCTACTCcagcggaggcagaggggaaggagtctTACCATTCCCGTTGG
TATCGAGGAGAAGCAAGGTGCGAGAGTATGTTGGGGGAGGCATTCAGCAC
CAGCTGCAACAAAAAGAGGAAATAATGAACGGgtcaagagaggaggggga
gggaggaggagtgagaCCGTTTGAGGAAGTTGAGGAcagcgaagaagggg
agggcgtaggGCTGGAAACATACGAGTGGAGGGgctcaaggaggggaaga
cgacctCCGGCGGACGGAGTAGAAGAAAAGCTTGAACCCGATACCTTGAG
CGggctcgagggaggggagggtgagatGATTGAGGAGGACGACTACAGTT
TTGACGAAGAGGAatacgaggaggatgaagaggactCGGCAGGATCGGTC
TTCTCAGATTTCGACGAACCACCTATGCACGACCATTCAAGTCATCCCAC
ACATGGGATGGAGAATAGCACATATAGCGTCGCAAGGCATGTGTAAATGT
GAGGACTTAGAAAAGAGGTGTTTTAGGCGGCGTGGAGAAAACGACGATGA
ACGATGGAATGGCTGTGAAATTATTGTCATTGCTCAATTAGATTGCTTGT
GACGACTAGGTATGTGAGAACGAAGCTCTCCTGATCGAAGCCCAAAGTCA
CGTTGAGTCATAATGCCGGCTTAAACAAACCCACCGACGTCAATGCATGC
GCTAGGGGACATATTCAAAGGACTCAACACAAAGCATTTCGAGGCGTGAA
CTTATCCACGTGTATGGAGCTGATGAAAGCAGTAGACCGAGGAGCAAAGT
ttcggaggaaaaagtgaaGGTACGAGTTATTTAAAGGCAAGCTTGTGTCT
GTATGACACATAGTGCGAACATTTGTGATAGTCGTCGTCGGCAGACGTAT
CTCAGTGATTGTAAATATACAGAAATATTGTGCAGGATGAGGAAAAGAGT
GCCCTTCCGACAGGCAGACAGCCTCTGAGAAAAGCAGAAAAGTGACCTGG
TATGAGGATGAAGTCCGTAGCGCATATAAAGCAATGCATATGAATGTGAA
AATCGGCATCGGAAAAAAGGTCAAAGCTTGAATGCTGAAGTGGGACTTCG
GTAGAAAGTTTGCTTTCTTTTGAAATTTGCGCCGAAGTCACATTTTGTAA
CATAACACCCCTAATGTCCCGATAAAGACATAAAGAAGATGTTGCTGCTG
ATAACTTATTTCGAAGCCGAAGCCTTCACCAATGATAACGTGCCAGTTGT
TACCAAATTTTTTATCAAACGTAATCTAGTACAAGTTGGGGGCATGGCAG
TATGAAATGTTCGTGAGCCTTATATCCAGCCG back to topCoding sequence (CDS) from alignment at CM002463.1:351404..354935+ >rna4348 ID=rna4348|Name=rna4348|organism=Nannochloropsis gaditana|type=CDS|length=3816bp|location=Sequence derived from alignment at CM002463.1:351404..354935+ (Nannochloropsis gaditana) ATGCCTGTGACAAGTCCTGCAGCTtccgtggagggagaaaatttGCGAAC ACGGCAGGTCGCACATCAGCACATGACAAAACAGAGAAGTAAGGCAACTG CTGCGCAAGCCATCGCCAACGCCTTCGTTGCCTCCACACTGACCTGGCTA CTTTGGAGTCTCTACGGCGTATTGGCAGGCTCCCTCTTCGTGGACATCTT CTACCCACAGGCCTGGCACGTCTCGGAGCACCGGCTTCTTCGCACCCTCA GCTATCTGTCCCGGCCCCTGGGCGCCGTCCTCTTCGGGCACCTGGGTGAC ACGTGGGGTCGTACCAAGACGTTGACCGTCTGCTTGGCCGTCATGGGGCT CGCCTCGGGCTGcatggccctcctccccacccatcAAGTCTGGGGCTGGG CCTCCTGgtacctccttcttgtccttcacgccctccaaggcctggccgtg ggcggACAGTGGGGGGGATGCCTCTTGCTCGCCTATGAATTCTGCCGGCA TGACCGACACAAGGGCttggtctcctccctcccccaagcCGGACGAGCCC TCGGGTACATGCTCACGGCCCTCATCTCTGCGAGtctggacaaggagaaa CCCCCGACAGCGGGAAGCCCCTCCGGCGGTACAACTCTGCACTTGGCAGA CAATGATCTGCGATGGCGATGGGCCCATGGCTTTGCCGCtgggcttctcc tcctcgcccttcaccTCCGCCTGCGTATTCCCGAGCCACGAGAGTTCCTG TACTTGAAGAAACACCGACGCCTCCGGGCTTTCCCCTTGTTCCGGGCCTT GCGGGCACAACTGTGGAACATCATCTGGGCCCTAGGCGCGCTATGGGTGG ACGGCGTGACGCAAGTCATGGTGGTCGGCTGGggcctgcccgccctcttA ACAGCTCACGGCATCTCCATGGAGACCCTCCTGACCTCGCTCGCAATCGC CGTGTTTGTCCAGGCCGTTTTCAtcgtggtgggagggtggcTCGGAGATC GGCTAGGGCGCCGGaagctcttcttcgtcgcctCTATGAGCATGGCTCTG GGCACCGTCTTCTACTTTTATGCCCTTTTTCgactctcctccccctcgcg cGCTTACCCCATCTACCTCGCCAACATCCTCTACCTCGGCATCGCCTACG GGACCCTCCAAGgcgtcttccccgccttgctcGTTGAGATTTTCCCCGAA AATGTCCGTTTCTCCGGGGTCGCGGTTCTCTACCAGGTCTCCCGCCTCTA CTCCTCTGTGGCGTGGCCCTACGCCTCACAGGCCTTGCTGAGGGCGTCGC GTGGAGCCAGGTTCAAGTTCTTGGCCCTGGAGAATGGGGAGAATTTGACG GGACTAGCAATATTCGTGGCTTCGGTGGCCGGTGTCTCGGCGATGAGTGT GCTGATGATCCAAATCTACTCcagcggaggcagaggggaaggagtctTAC CATTCCCGTTGGTATCGAGGAGAAGCAAGGTGCGAGAGTATGTTGGGGGA GGCATTCAGCACCAGCTGCAACAAAAAGAGGAAATAATGAACGGgtcaag agaggagggggagggaggaggagtgagaCCGTTTGAGGAAGTTGAGGAca gcgaagaaggggagggcgtaggGCTGGAAACATACGAGTGGAGGGgctca aggaggggaagacgacctCCGGCGGACGGAGTAGAAGAAAAGCTTGAACC CGATACCTTGAGCGggctcgagggaggggagggtgagatGATTGAGGAGG ACGACTACAGTTTTGACGAAGAGGAatacgaggaggatgaagaggactCG GCAGGATCGGTCTTCTCAGATTTCGACGAACCACCTATGCACGACCATTC AAGTCATCCCACACATGGGATGGAGAATAGCACATATAGCGTCGCAAGGC ATGTGTAAATGCCTGTGACAAGTCCTGCAGCTtccgtggagggagaaaat ttGCGAACACGGCAGGTCGCACATCAGCACATGACAAAACAGAGAAGTAA GGCAACTGCTGCGCAAGCCATCGCCAACGCCTTCGTTGCCTCCACACTGA CCTGGCTACTTTGGAGTCTCTACGGCGTATTGGCAGGCTCCCTCTTCGTG GACATCTTCTACCCACAGGCCTGGCACGTCTCGGAGCACCGGCTTCTTCG CACCCTCAGCTATCTGTCCCGGCCCCTGGGCGCCGTCCTCTTCGGGCACC TGGGTGACACGTGGGGTCGTACCAAGACGTTGACCGTCTGCTTGGCCGTC ATGGGGCTCGCCTCGGGCTGcatggccctcctccccacccatcAAGTCTG GGGCTGGGCCTCCTGgtacctccttcttgtccttcacgccctccaaggcc tggccgtgggcggACAGTGGGGGGGATGCCTCTTGCTCGCCTATGAATTC TGCCGGCATGACCGACACAAGGGCttggtctcctccctcccccaagcCGG ACGAGCCCTCGGGTACATGCTCACGGCCCTCATCTCTGCGAGtctggaca aggagaaaCCCCCGACAGCGGGAAGCCCCTCCGGCGGTACAACTCTGCAC TTGGCAGACAATGATCTGCGATGGCGATGGGCCCATGGCTTTGCCGCtgg gcttctcctcctcgcccttcaccTCCGCCTGCGTATTCCCGAGCCACGAG AGTTCCTGTACTTGAAGAAACACCGACGCCTCCGGGCTTTCCCCTTGTTC CGGGCCTTGCGGGCACAACTGTGGAACATCATCTGGGCCCTAGGCGCGCT ATGGGTGGACGGCGTGACGCAAGTCATGGTGGTCGGCTGGggcctgcccg ccctcttAACAGCTCACGGCATCTCCATGGAGACCCTCCTGACCTCGCTC GCAATCGCCGTGTTTGTCCAGGCCGTTTTCAtcgtggtgggagggtggcT CGGAGATCGGCTAGGGCGCCGGaagctcttcttcgtcgcctCTATGAGCA TGGCTCTGGGCACCGTCTTCTACTTTTATGCCCTTTTTCgactctcctcc ccctcgcgcGCTTACCCCATCTACCTCGCCAACATCCTCTACCTCGGCAT CGCCTACGGGACCCTCCAAGgcgtcttccccgccttgctcGTTGAGATTT TCCCCGAAAATGTCCGTTTCTCCGGGGTCGCGGTTCTCTACCAGGTCTCC CGCCTCTACTCCTCTGTGGCGTGGCCCTACGCCTCACAGGCCTTGCTGAG GGCGTCGCGTGGAGCCAGGTTCAAGTTCTTGGCCCTGGAGAATGGGGAGA ATTTGACGGGACTAGCAATATTCGTGGCTTCGGTGGCCGGTGTCTCGGCG ATGAGTGTGCTGATGATCCAAATCTACTCcagcggaggcagaggggaagg agtctTACCATTCCCGTTGGTATCGAGGAGAAGCAAGGTGCGAGAGTATG TTGGGGGAGGCATTCAGCACCAGCTGCAACAAAAAGAGGAAATAATGAAC GGgtcaagagaggagggggagggaggaggagtgagaCCGTTTGAGGAAGT TGAGGAcagcgaagaaggggagggcgtaggGCTGGAAACATACGAGTGGA GGGgctcaaggaggggaagacgacctCCGGCGGACGGAGTAGAAGAAAAG CTTGAACCCGATACCTTGAGCGggctcgagggaggggagggtgagatGAT TGAGGAGGACGACTACAGTTTTGACGAAGAGGAatacgaggaggatgaag aggactCGGCAGGATCGGTCTTCTCAGATTTCGACGAACCACCTATGCAC GACCATTCAAGTCATCCCACACATGGGATGGAGAATAGCACATATAGCGT CGCAAGGCATGTGTAA back to top
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