EWM26336.1, cds4338 (CDS) Nannochloropsis gaditana

Overview
NameEWM26336.1
Unique Namecds4338
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002463.1:351681..351764 +
Alignment locationCM002463.1:352276..354099 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM26336.1
Productshikimate transporter 3
Orig transcript idgnl|cribi|Naga_100078g21.7011.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002463.1supercontigCM002463.1:351681..351764 +
CM002463.1supercontigCM002463.1:352276..354099 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0055085transmembrane transport
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR020846MFS_dom
IPR011701MFS
Homology
BLAST of EWM26336.1 vs. NCBI_GenBank
Match: gi|585108343|gb|EWM26336.1| (shikimate transporter 3 [Nannochloropsis gaditana])

HSP 1 Score: 1283.47 bits (3320), Expect = 0.000e+0
Identity = 635/635 (100.00%), Postives = 635/635 (100.00%), Query Frame = 0
Query:    1 MPVTSPAASVEGENLRTRQVAHQHMTKQRSKATAAQAIANAFVASTLTWLLWSLYGVLAGSLFVDIFYPQAWHVSEHRLLRTLSYLSRPLGAVLFGHLGDTWGRTKTLTVCLAVMGLASGCMALLPTHQVWGWASWYLLLVLHALQGLAVGGQWGGCLLLAYEFCRHDRHKGLVSSLPQAGRALGYMLTALISASLDKEKPPTAGSPSGGTTLHLADNDLRWRWAHGFAAGLLLLALHLRLRIPEPREFLYLKKHRRLRAFPLFRALRAQLWNIIWALGALWVDGVTQVMVVGWGLPALLTAHGISMETLLTSLAIAVFVQAVFIVVGGWLGDRLGRRKLFFVASMSMALGTVFYFYALFRLSSPSRAYPIYLANILYLGIAYGTLQGVFPALLVEIFPENVRFSGVAVLYQVSRLYSSVAWPYASQALLRASRGARFKFLALENGENLTGLAIFVASVAGVSAMSVLMIQIYSSGGRGEGVLPFPLVSRRSKVREYVGGGIQHQLQQKEEIMNGSREEGEGGGVRPFEEVEDSEEGEGVGLETYEWRGSRRGRRPPADGVEEKLEPDTLSGLEGGEGEMIEEDDYSFDEEEYEEDEEDSAGSVFSDFDEPPMHDHSSHPTHGMENSTYSVARHV 635
            MPVTSPAASVEGENLRTRQVAHQHMTKQRSKATAAQAIANAFVASTLTWLLWSLYGVLAGSLFVDIFYPQAWHVSEHRLLRTLSYLSRPLGAVLFGHLGDTWGRTKTLTVCLAVMGLASGCMALLPTHQVWGWASWYLLLVLHALQGLAVGGQWGGCLLLAYEFCRHDRHKGLVSSLPQAGRALGYMLTALISASLDKEKPPTAGSPSGGTTLHLADNDLRWRWAHGFAAGLLLLALHLRLRIPEPREFLYLKKHRRLRAFPLFRALRAQLWNIIWALGALWVDGVTQVMVVGWGLPALLTAHGISMETLLTSLAIAVFVQAVFIVVGGWLGDRLGRRKLFFVASMSMALGTVFYFYALFRLSSPSRAYPIYLANILYLGIAYGTLQGVFPALLVEIFPENVRFSGVAVLYQVSRLYSSVAWPYASQALLRASRGARFKFLALENGENLTGLAIFVASVAGVSAMSVLMIQIYSSGGRGEGVLPFPLVSRRSKVREYVGGGIQHQLQQKEEIMNGSREEGEGGGVRPFEEVEDSEEGEGVGLETYEWRGSRRGRRPPADGVEEKLEPDTLSGLEGGEGEMIEEDDYSFDEEEYEEDEEDSAGSVFSDFDEPPMHDHSSHPTHGMENSTYSVARHV
Sbjct:    1 MPVTSPAASVEGENLRTRQVAHQHMTKQRSKATAAQAIANAFVASTLTWLLWSLYGVLAGSLFVDIFYPQAWHVSEHRLLRTLSYLSRPLGAVLFGHLGDTWGRTKTLTVCLAVMGLASGCMALLPTHQVWGWASWYLLLVLHALQGLAVGGQWGGCLLLAYEFCRHDRHKGLVSSLPQAGRALGYMLTALISASLDKEKPPTAGSPSGGTTLHLADNDLRWRWAHGFAAGLLLLALHLRLRIPEPREFLYLKKHRRLRAFPLFRALRAQLWNIIWALGALWVDGVTQVMVVGWGLPALLTAHGISMETLLTSLAIAVFVQAVFIVVGGWLGDRLGRRKLFFVASMSMALGTVFYFYALFRLSSPSRAYPIYLANILYLGIAYGTLQGVFPALLVEIFPENVRFSGVAVLYQVSRLYSSVAWPYASQALLRASRGARFKFLALENGENLTGLAIFVASVAGVSAMSVLMIQIYSSGGRGEGVLPFPLVSRRSKVREYVGGGIQHQLQQKEEIMNGSREEGEGGGVRPFEEVEDSEEGEGVGLETYEWRGSRRGRRPPADGVEEKLEPDTLSGLEGGEGEMIEEDDYSFDEEEYEEDEEDSAGSVFSDFDEPPMHDHSSHPTHGMENSTYSVARHV 635          
BLAST of EWM26336.1 vs. NCBI_GenBank
Match: gi|1148582342|ref|WP_077328927.1| (MFS transporter [Virgibacillus siamensis])

HSP 1 Score: 194.512 bits (493), Expect = 7.788e-52
Identity = 138/452 (30.53%), Postives = 232/452 (51.33%), Query Frame = 0
Query:   36 QAIANAFVASTLTWLLWSLYGVLAGSLFVDIFYPQAWHVSEHRL---LRTLSYLSRPLGAVLFGHLGDTWGRTKTLTVCLAVMGLASGCMALLPTHQVWGWASWYLLLVLHALQGLAVGGQWGGCLLLAYEFCRHDRHKGLVSSLPQAGRALGYMLTA----LISASLDKEKPPTAGSPSGGTTLHLADNDLRWRWAHGFAAGLLLLALHLRLRIPEPREFLYLKKHRRLRAFPLFRALRAQLWNIIWALGALWVDGVTQVMVVGWGLPALLTAHGISMETLLTSLAIAVFVQAVFIVVGGWLGDRLGRRKLFFVASMSMALGTVFYFYALFRLSSPSRAYPIYLANILYLGIAYGTLQGVFPALLVEIFPENVRFSGVAVLYQVSRLYSSVAWPYASQALLRASRGARFKFLALENGENLTGLAIFVASVAGVSAMSVLMIQIYSSGGRGE 480
            + +A++ + +T+ W  + LYGVLAG +   +++P    V    L      + ++ RPLG ++ GH GD  GR   L + L VMG+A+G +A LPT++  G  +  +LLVL  LQGLAVGG+WGG +L+ +EF  H   +G  +SLPQ G ++G +L++    LIS  L   +    G                WR A G +  L+ L L++RL++ E  EF  +KK     + P     +  + N++  +GA ++DGV   ++  + +  L+    IS +  L  ++IA FV   FI + G++ DR+GR + ++  S+      +  F+ +    S      I+L+ I+  GI Y  + G   AL  E+F   VR++G++ +YQ S ++SS   P  +  L+  + G+ +  +A           IF   V+ VSA  +   Q   +G +G+
Sbjct:    4 RVVASSMIGATIEWYDFFLYGVLAGIVLNHLYFPSGDPVISTILAFATFAIGFVMRPLGGIIIGHFGDKIGRKSMLILTLTVMGIATGLIAFLPTYEQIGIWAPIILLVLRMLQGLAVGGEWGGAVLMTFEFA-HPSKRGFFASLPQIGLSIGLLLSSGIVGLISTILTNSQFMVWG----------------WRIAFGVSVVLVFLGLYIRLKVSETPEFQKVKKQNTESSVPFKDMWKGNVGNVLAGMGARYIDGVFFNVMGVFSITFLVNNIDISRDVALLGVSIASFVMCFFIPIFGYISDRVGRTRTYWYGSLITGFSALPAFWIM--TVSGGNTLLIWLSIIIPFGIFYAAVYGPEAALFAELFEPRVRYTGMSFVYQFSGIFSSGITPMIATYLIALNGGSPYLLVA---------YVIFAGIVSAVSARWIYNKQNQVTGVKGK 427          
BLAST of EWM26336.1 vs. NCBI_GenBank
Match: gi|498217641|ref|WP_010531797.1| (MFS transporter [Lentibacillus jeotgali])

HSP 1 Score: 191.815 bits (486), Expect = 8.636e-51
Identity = 132/439 (30.07%), Postives = 227/439 (51.71%), Query Frame = 0
Query:   31 KATAAQAIANAFVASTLTWLLWSLYGVLAGSLFVDIFYPQAWHVSEHRL---LRTLSYLSRPLGAVLFGHLGDTWGRTKTLTVCLAVMGLASGCMALLPTHQVWGWASWYLLLVLHALQGLAVGGQWGGCLLLAYEFCRHDRHKGLVSSLPQAGRALGYMLTALISASLDKEKPPTAGSPSGGTTLHLADNDLRWRW--AHGFAAGLLLLALHLRLRIPEPREFLYLKKHRRLRAFPLFRALRAQLWNIIWALGALWVDGVTQVMVVGWGLPALLTAHGISMETLLTSLAIAVFVQAVFIVVGGWLGDRLGRRKLFFVASMSMALGTVFYFYALFRLSSPSRAYPIYLANILYLGIAYGTLQGVFPALLVEIFPENVRFSGVAVLYQVSRLYSSVAWPYASQALLRASRGARFKFLALENGENLTGLAIFVASVAGVSA 464
            K    + +A++ + +T+ W  + LYGV+AG +   +++P    V    L      + ++ RPLG ++ GH GD  GR   L + L VMG+A+G +A LPT++  G  +  +LL L  LQGLAVGG+WGG +L+ +E+ +  R +GL +SLPQ G ++G +L++ I   L              +TL      + W W  A G +  L+ L L++RL++ E  EF  +K  +     P     +  + N++  +GA ++DGV   ++  + +  L+    +S +  L  ++IA FV   FI + G + DR+GR + ++  S+      +  F+ +    S    + I+LA I+  GI Y ++ G   AL  E+F   VR++G++ +YQ S ++SS   P  +  L+  + GA +  +A           IF   V+ +SA
Sbjct:    6 KKMVKRVVASSVIGATIEWYDFFLYGVVAGIVLNQLYFPSGDPVISTLLAFATFAVGFVMRPLGGIIIGHFGDKIGRKSMLILTLTVMGIATGLIAFLPTYEQIGIWAPIILLALRMLQGLAVGGEWGGAVLMTFEYAKPSR-RGLFASLPQVGLSIGLLLSSGIVGLL--------------STLLTNGQFMAWGWRVAFGVSVVLVFLGLYIRLKVSETPEFQEVKDQKTESKVPFKDMWKGNVGNVLAGMGARYIDGVFFNVMGVFSITYLVNNIDVSRDVALLGVSIASFVMCFFIPIFGHISDRVGRTRTYWYGSLITGFSALPAFWMM--SVSGGSTWVIWLAIIIPFGIFYASVYGPEAALFAELFEPRVRYTGMSFVYQFSGIFSSGITPMIATYLIALNDGAPYILVA---------YVIFAGIVSAISA 418          
BLAST of EWM26336.1 vs. NCBI_GenBank
Match: gi|737851315|ref|WP_035818555.1| (MFS transporter [Cupriavidus sp. SK-4] >gi|601446864|gb|EYS93898.1| major facilitator transporter [Cupriavidus sp. SK-4])

HSP 1 Score: 164.466 bits (415), Expect = 6.586e-41
Identity = 143/463 (30.89%), Postives = 233/463 (50.32%), Query Frame = 0
Query:   25 MTKQRSKATAAQAIANAFVASTLTWLLWSLYGVLAGSLFVDIFYPQAWHVSEHRLLRT---LSYLSRPLGAVLFGHLGDTWGRTKTLTVCLAVMGLASGCMALLPTHQVWGWASWYLLLVLHALQGLAVGGQWGGCLLLAYEFCRHDRHKGLVSSLPQAGRALGYMLTALISASLDKEKPPTAGSPSGGTTLHLADNDLR---WRWAHGFAAGLLLLALHLRLRIPEPREFLYLKKHRRLRAFPLFRALRAQLWNIIWALGALWVDGVTQVMVVGWGLPALLTAHGISMETLLTSLAIAVFVQAVFIVVGGWLGDRLGRRKLFFVASMSMALGTVFYFYALFRLSSPSRAYPIYLANILYLGIAYGTLQGVFPALLVEIFPENVRFSGVAVLYQVSRLYSSVAWPYASQALLRASRGARFKFLALENGENLTGLAIFVASVAGVSAMSVLMIQIYSSGGRGEG 481
            MT    +A    A+A+  + +T+ W  + LYGV+AG +F  +++P    +    L  T   + +++RPLG V+FGH GD  GR   L + L +MG+++  + L+PT+   G  +  LLL+L  LQG+ +GG+WGG +L+AYE+    + +G  +SLPQ G A+G  L + + A L               +L L D       WR A   +AG++ + +++RL + E  EF  +K+       P    +R    NI+  +GA ++DGV   +   + +  L     IS    L  +  A      FI   G L DR+GR +++F  S+  AL     F+ +  L+S      ++L+ ++  GI Y  + G   AL  E+F   VR++G++ +YQ S +++S   P  + ALLR+  G  ++  A            +VA    VSA+SV +I      GRGEG
Sbjct:    1 MTSPNEQAIRKVALASV-IGATIEWYDFFLYGVVAGLVFNKLYFPGNDPLVATMLAYTTFAVGFVTRPLGGVIFGHFGDKVGRKSMLVITLMIMGVSTFLIGLVPTYDSIGILAPILLLLLRVLQGIGLGGEWGGAVLMAYEYAPPGK-RGFYASLPQIGLAIGLCLASGVVALL---------------SLTLTDAQFLAWGWRVAFLISAGMVFVGMYIRLNVKETPEFAVIKQRNAETQIPFVDMMRRYPGNILKGMGARYIDGVFFNIFGVFSITYLTQTINISRTEALVGVMAAAIAMCFFIPFFGHLSDRIGRTRVYFWGSLITALSAFPAFWLM--LNSGGNTMLLWLSIVVPFGILYAAVYGPEAALFCELFDARVRYTGISFVYQFSGIFASGITPIIATALLRSGGGKPWQICA------------YVAFAGVVSALSVALI------GRGEG 426          
BLAST of EWM26336.1 vs. NCBI_GenBank
Match: gi|499936772|ref|WP_011617506.1| (MFS transporter [Cupriavidus necator] >gi|113530287|emb|CAJ96634.1| MFS transporter, MHS family [Ralstonia eutropha H16])

HSP 1 Score: 164.466 bits (415), Expect = 7.275e-41
Identity = 142/463 (30.67%), Postives = 233/463 (50.32%), Query Frame = 0
Query:   25 MTKQRSKATAAQAIANAFVASTLTWLLWSLYGVLAGSLFVDIFYPQAWHVSEHRLLRT---LSYLSRPLGAVLFGHLGDTWGRTKTLTVCLAVMGLASGCMALLPTHQVWGWASWYLLLVLHALQGLAVGGQWGGCLLLAYEFCRHDRHKGLVSSLPQAGRALGYMLTALISASLDKEKPPTAGSPSGGTTLHLADNDLR---WRWAHGFAAGLLLLALHLRLRIPEPREFLYLKKHRRLRAFPLFRALRAQLWNIIWALGALWVDGVTQVMVVGWGLPALLTAHGISMETLLTSLAIAVFVQAVFIVVGGWLGDRLGRRKLFFVASMSMALGTVFYFYALFRLSSPSRAYPIYLANILYLGIAYGTLQGVFPALLVEIFPENVRFSGVAVLYQVSRLYSSVAWPYASQALLRASRGARFKFLALENGENLTGLAIFVASVAGVSAMSVLMIQIYSSGGRGEG 481
            MT    +A    A+A+  + +T+ W  + LYGV+AG +F  +++P    +    L  T   + +++RPLG V+FGH GD  GR   L + L +MG+++  + L+PT+   G  +  LLL+L  LQG+ +GG+WGG +L+AYE+    + +G  +SLPQ G A+G  L + + A L               +L L D       WR A   +AG++ + +++RL + E  EF  +K+       P    +R    NI+  +GA ++DGV   +   + +  L     IS    L  +  A      FI   G L DR+GR +++F  S+  AL     F+ +  L+S      ++L+ ++  GI Y  + G   AL  E+F   VR++G++ +YQ S +++S   P  + ALL++  G  ++  A            +VA    VSA+SV +I      GRGEG
Sbjct:    1 MTSPNEQAIRKVALASV-IGATIEWYDFFLYGVVAGLVFNKLYFPGNDPLVATMLAYTTFAVGFVTRPLGGVIFGHFGDKVGRKSMLVITLMIMGVSTFLIGLVPTYDSIGILAPILLLLLRVLQGIGLGGEWGGAVLMAYEYAPPGK-RGFYASLPQIGLAIGLCLASGVVALL---------------SLTLTDTQFLAWGWRVAFLISAGMVFVGMYIRLNVKETPEFAVIKQRNAETQIPFVDMMRRYPGNILKGMGARYIDGVFFNIFGVFSITYLTQTINISRTEALVGVMAAAIAMCFFIPFFGHLSDRIGRTRVYFWGSLITALSAFPAFWLM--LNSGGNTMLLWLSIVVPFGILYAAVYGPEAALFCELFDARVRYTGISFVYQFSGIFASGITPIIATALLKSGGGKPWQICA------------YVAFAGVVSALSVALI------GRGEG 426          
BLAST of EWM26336.1 vs. NCBI_GenBank
Match: gi|1108392537|emb|SCU73374.1| (Shikimate transporter [Cupriavidus necator])

HSP 1 Score: 164.081 bits (414), Expect = 8.529e-41
Identity = 143/463 (30.89%), Postives = 233/463 (50.32%), Query Frame = 0
Query:   25 MTKQRSKATAAQAIANAFVASTLTWLLWSLYGVLAGSLFVDIFYPQAWHVSEHRLLRT---LSYLSRPLGAVLFGHLGDTWGRTKTLTVCLAVMGLASGCMALLPTHQVWGWASWYLLLVLHALQGLAVGGQWGGCLLLAYEFCRHDRHKGLVSSLPQAGRALGYMLTALISASLDKEKPPTAGSPSGGTTLHLADNDLR---WRWAHGFAAGLLLLALHLRLRIPEPREFLYLKKHRRLRAFPLFRALRAQLWNIIWALGALWVDGVTQVMVVGWGLPALLTAHGISMETLLTSLAIAVFVQAVFIVVGGWLGDRLGRRKLFFVASMSMALGTVFYFYALFRLSSPSRAYPIYLANILYLGIAYGTLQGVFPALLVEIFPENVRFSGVAVLYQVSRLYSSVAWPYASQALLRASRGARFKFLALENGENLTGLAIFVASVAGVSAMSVLMIQIYSSGGRGEG 481
            MT    +A    A+A+  + +T+ W  + LYGV+AG +F  +++P    +    L  T   + +++RPLG V+FGH GD  GR   L + L +MG+++  + L+PT+   G  +  LLL+L  LQG+ +GG+WGG +L+AYE+    + KG  +SLPQ G A+G  L + + A L               +L L D       WR A   +AG++ + +++RL + E  EF  +K+       P    +R    NI+  +GA ++DGV   +   + +  L     IS    L  +  A      FI   G L DR+GR +++F  S+  AL     F+ +  L+S      ++L+ ++  GI Y  + G   AL  E+F   VR++G++ +YQ S +++S   P  + ALL++  G  ++  A            +VA    VSA+SV +I      GRGEG
Sbjct:    1 MTSPNEQAIRKVALASV-IGATIEWYDFFLYGVVAGLVFNKLYFPGNDPLVATMLAYTTFAVGFVTRPLGGVIFGHFGDKVGRKSMLVITLMIMGVSTFLIGLVPTYDSIGILAPILLLLLRVLQGIGLGGEWGGAVLMAYEYAPPGK-KGFYASLPQIGLAIGLCLASGVVALL---------------SLTLTDAQFLAWGWRVAFLISAGMVFVGMYIRLNVKETPEFAVIKQRNAETQIPFVDMMRRYPGNILKGMGARYIDGVFFNIFGVFSITYLTQTINISRTEALVGVMAAAIAMCFFIPFFGHLSDRIGRTRVYFWGSLITALSAFPAFWLM--LNSGGNTMLLWLSIVVPFGILYAAVYGPEAALFCELFDARVRYTGISFVYQFSGIFASGITPIIATALLKSGGGKPWQICA------------YVAFAGIVSALSVALI------GRGEG 426          
BLAST of EWM26336.1 vs. NCBI_GenBank
Match: gi|517120201|ref|WP_018309019.1| (MFS transporter [Cupriavidus sp. UYPR2.512])

HSP 1 Score: 163.31 bits (412), Expect = 1.744e-40
Identity = 143/463 (30.89%), Postives = 233/463 (50.32%), Query Frame = 0
Query:   25 MTKQRSKATAAQAIANAFVASTLTWLLWSLYGVLAGSLFVDIFYPQAWHVSEHRLLRT---LSYLSRPLGAVLFGHLGDTWGRTKTLTVCLAVMGLASGCMALLPTHQVWGWASWYLLLVLHALQGLAVGGQWGGCLLLAYEFCRHDRHKGLVSSLPQAGRALGYMLTALISASLDKEKPPTAGSPSGGTTLHLADNDLR---WRWAHGFAAGLLLLALHLRLRIPEPREFLYLKKHRRLRAFPLFRALRAQLWNIIWALGALWVDGVTQVMVVGWGLPALLTAHGISMETLLTSLAIAVFVQAVFIVVGGWLGDRLGRRKLFFVASMSMALGTVFYFYALFRLSSPSRAYPIYLANILYLGIAYGTLQGVFPALLVEIFPENVRFSGVAVLYQVSRLYSSVAWPYASQALLRASRGARFKFLALENGENLTGLAIFVASVAGVSAMSVLMIQIYSSGGRGEG 481
            MT    +A    A+A+  + +T+ W  + LYGV+AG +F  +++P    +    L  T   + +++RPLG V+FGH GD  GR   L + L +MG+++  + L+PT+   G  +  LLL+L  LQG+ +GG+WGG +L+AYE+    + +G  +SLPQ G A+G  L + + A L               +L L D       WR A   +AG++ + +++RL + E  EF  +K+       P    +R    NI+  +GA ++DGV   +   + +  L     IS    L  +  A      FI   G L DR+GR +++F  S+  AL     F+ +  L+S      ++L+ ++  GI Y  + G   AL  E+F   VR++G++ +YQ S +++S   P  + ALLR+  G  ++  A            +VA    VSA+SV +I      GRGEG
Sbjct:    1 MTSPNEQAIRKVALASV-IGATIEWYDFFLYGVVAGLVFNKLYFPGNDPLVATMLAYTTFAVGFVTRPLGGVIFGHFGDKVGRKSMLVITLMIMGVSTFLIGLVPTYDSIGILAPILLLLLRVLQGIGLGGEWGGAVLMAYEYAPPGK-RGFYASLPQIGLAIGLCLASGVVALL---------------SLTLTDAQFLAWGWRVAFLISAGMVFVGMYIRLNVKETPEFAVIKQRNAETQIPFVDMMRRYPGNILKGMGARYIDGVFFNIFGVFSITYLTQTIHISRTEALVGVMAAAIAMCFFIPFFGHLSDRIGRTRVYFWGSLITALSAFPAFWLM--LNSGGNTMLLWLSIVVPFGILYAAVYGPEAALFCELFDARVRYTGISFVYQFSGIFASGITPIIATALLRSGGGKPWQICA------------YVAFAGLVSALSVALI------GRGEG 426          
BLAST of EWM26336.1 vs. NCBI_GenBank
Match: gi|498509862|ref|WP_010810329.1| (MFS transporter [Ralstonia sp. GA3-3] >gi|490340376|gb|EON20740.1| major facilitator superfamily transporter MHS family protein [Ralstonia sp. GA3-3])

HSP 1 Score: 163.31 bits (412), Expect = 1.888e-40
Identity = 142/463 (30.67%), Postives = 233/463 (50.32%), Query Frame = 0
Query:   25 MTKQRSKATAAQAIANAFVASTLTWLLWSLYGVLAGSLFVDIFYPQAWHVSEHRLLRT---LSYLSRPLGAVLFGHLGDTWGRTKTLTVCLAVMGLASGCMALLPTHQVWGWASWYLLLVLHALQGLAVGGQWGGCLLLAYEFCRHDRHKGLVSSLPQAGRALGYMLTALISASLDKEKPPTAGSPSGGTTLHLADNDLR---WRWAHGFAAGLLLLALHLRLRIPEPREFLYLKKHRRLRAFPLFRALRAQLWNIIWALGALWVDGVTQVMVVGWGLPALLTAHGISMETLLTSLAIAVFVQAVFIVVGGWLGDRLGRRKLFFVASMSMALGTVFYFYALFRLSSPSRAYPIYLANILYLGIAYGTLQGVFPALLVEIFPENVRFSGVAVLYQVSRLYSSVAWPYASQALLRASRGARFKFLALENGENLTGLAIFVASVAGVSAMSVLMIQIYSSGGRGEG 481
            MT    +A    A+A+  + +T+ W  + LYGV+AG +F  +++P    +    L  T   + +++RPLG V+FGH GD  GR   L + L +MG+++  + L+PT+   G  +  LLL+L  LQG+ +GG+WGG +L+AYE+    + +G  +SLPQ G A+G  L + + A L               +L L D       WR A   +AG++ + +++RL + E  EF  +K+       P    +R    NI+  +GA ++DGV   +   + +  L     IS    L  +  A      FI   G L DR+GR +++F  S+  AL     F+ +  L+S      ++L+ ++  GI Y  + G   AL  E+F   VR++G++ +YQ S +++S   P  + ALL++  G  ++  A            +VA    VSA+SV +I      GRGEG
Sbjct:    1 MTSPNEQAIRKVALASV-IGATIEWYDFFLYGVVAGLVFNKLYFPGNDPLVATMLAYTTFAVGFVTRPLGGVIFGHFGDKVGRKSMLVITLMIMGVSTFLIGLVPTYDSIGILAPILLLLLRVLQGIGLGGEWGGAVLMAYEYAPPGK-RGFYASLPQIGLAIGLCLASGVVALL---------------SLTLTDAQFLAWGWRVAFLISAGMVFVGMYIRLNVKETPEFAVIKQRNAETQIPFVDMMRRYPGNILKGMGARYIDGVFFNIFGVFSITYLTQTINISRTEALVGVMAAAIAMCFFIPFFGHLSDRIGRTRVYFWGSLITALSAFPAFWLM--LNSGGNTMLLWLSIVVPFGILYAAVYGPEAALFCELFDARVRYTGISFVYQFSGIFASGITPIIATALLKSGGGKPWQICA------------YVAFAGVVSALSVALI------GRGEG 426          
BLAST of EWM26336.1 vs. NCBI_GenBank
Match: gi|503719362|ref|WP_013953438.1| (MFS transporter [Cupriavidus necator] >gi|338169698|gb|AEI80752.1| major facilitator superfamily MFS MHS family [Cupriavidus necator N-1])

HSP 1 Score: 163.31 bits (412), Expect = 2.170e-40
Identity = 143/463 (30.89%), Postives = 233/463 (50.32%), Query Frame = 0
Query:   25 MTKQRSKATAAQAIANAFVASTLTWLLWSLYGVLAGSLFVDIFYPQAWHVSEHRLLRT---LSYLSRPLGAVLFGHLGDTWGRTKTLTVCLAVMGLASGCMALLPTHQVWGWASWYLLLVLHALQGLAVGGQWGGCLLLAYEFCRHDRHKGLVSSLPQAGRALGYMLTALISASLDKEKPPTAGSPSGGTTLHLADNDLR---WRWAHGFAAGLLLLALHLRLRIPEPREFLYLKKHRRLRAFPLFRALRAQLWNIIWALGALWVDGVTQVMVVGWGLPALLTAHGISMETLLTSLAIAVFVQAVFIVVGGWLGDRLGRRKLFFVASMSMALGTVFYFYALFRLSSPSRAYPIYLANILYLGIAYGTLQGVFPALLVEIFPENVRFSGVAVLYQVSRLYSSVAWPYASQALLRASRGARFKFLALENGENLTGLAIFVASVAGVSAMSVLMIQIYSSGGRGEG 481
            MT    +A    A+A+  + +T+ W  + LYGV+AG +F  +++P    +    L  T   + +++RPLG V+FGH GD  GR   L + L +MG+++  + L+PT+   G  +  LLL+L  LQG+ +GG+WGG +L+AYE+    + +G  +SLPQ G A+G  L + + A L               +L L D       WR A   +AG++ + +++RL + E  EF  +K+       P    +R    NI+  +GA ++DGV   +   + +  L     IS    L  +  A      FI   G L DR+GR +++F  S+  AL     F+ +  L+S      ++L+ ++  GI Y  + G   AL  E+F   VR++G++ +YQ S +++S   P  + ALLR+  G  ++  A            +VA    VSA+SV +I      GRGEG
Sbjct:    1 MTSPNEQAIRKVALASV-IGATIEWYDFFLYGVVAGLVFNKLYFPGNDPLVATILAYTTFAVGFVTRPLGGVIFGHFGDKVGRKSMLVITLMIMGVSTFLIGLVPTYDSIGILAPILLLLLRVLQGIGLGGEWGGAVLMAYEYAPPGK-RGFYASLPQIGLAIGLCLASGVVALL---------------SLTLTDAQFLAWGWRVAFLISAGMVFVGMYIRLNVKETPEFAVIKQRNAETQIPFVDMMRRYPGNILKGMGARYIDGVFFNIFGVFSITYLTQTIHISRTEALVGVMAAAIAMCFFIPFFGHLSDRIGRTRVYFWGSLITALSAFPAFWLM--LNSGGNTMLLWLSIVVPFGILYAAVYGPEAALFCELFDARVRYTGISFVYQFSGIFASGITPIIATALLRSGGGKPWQICA------------YVAFAGVVSALSVALI------GRGEG 426          
BLAST of EWM26336.1 vs. NCBI_GenBank
Match: gi|1049681161|emb|SCB17641.1| (metabolite-proton symporter [Cupriavidus alkaliphilus])

HSP 1 Score: 158.303 bits (399), Expect = 9.911e-39
Identity = 142/463 (30.67%), Postives = 233/463 (50.32%), Query Frame = 0
Query:   25 MTKQRSKATAAQAIANAFVASTLTWLLWSLYGVLAGSLFVDIFYPQAWHVSEHRLLRT---LSYLSRPLGAVLFGHLGDTWGRTKTLTVCLAVMGLASGCMALLPTHQVWGWASWYLLLVLHALQGLAVGGQWGGCLLLAYEFCRHDRHKGLVSSLPQAGRALGYMLTALISASLDKEKPPTAGSPSGGTTLHLADNDLR---WRWAHGFAAGLLLLALHLRLRIPEPREFLYLKKHRRLRAFPLFRALRAQLWNIIWALGALWVDGVTQVMVVGWGLPALLTAHGISMETLLTSLAIAVFVQAVFIVVGGWLGDRLGRRKLFFVASMSMALGTVFYFYALFRLSSPSRAYPIYLANILYLGIAYGTLQGVFPALLVEIFPENVRFSGVAVLYQVSRLYSSVAWPYASQALLRASRGARFKFLALENGENLTGLAIFVASVAGVSAMSVLMIQIYSSGGRGEG 481
            MT    +A    A+A+  + +T+ W  + LYGV+AG +F  +++P    +    L  T   + +++RPLG V+FGH GD  GR   L + L +MG+++  + L+PT+   G  +  LLL+L  LQG+ +GG+WGG +L+AYE+    R KG  +SLPQ G A+G  L + + A L               +L L+D       WR A   +A ++ + +++RL + E  EF  +K+       P    +R    NI+  +GA ++DGV   +   + +  L     IS    L  +  A      FI + G L DR+GR +++F  ++  AL     F+ +  L+S      ++LA ++  GI Y  + G   AL  E+F   VR++G++ +YQ S +++S   P  + ALL++  G  ++  A            +VA    VSA+SV +I      GRG G
Sbjct:    1 MTSPNEQAIRKVALASV-IGATIEWYDFFLYGVVAGLVFNKLYFPGDDPLVATMLAYTTFAVGFVTRPLGGVIFGHFGDKVGRKSMLVMTLMIMGVSTFLIGLVPTYDSIGILAPVLLLLLRVLQGIGLGGEWGGAVLMAYEYAPPHR-KGFYASLPQIGLAIGLCLASGVVALL---------------SLTLSDAQFLAWGWRVAFLISAAMVFVGMYIRLNVKETPEFAEVKQRNAETQIPFVDMMRRYPGNIVKGMGARYIDGVFFNIFGVFSITYLTQTVNISRTQALVGVMAAAIAMCFFIPLFGHLSDRIGRTRVYFWGALITALSAFPAFWLM--LNSGGNTMLLWLAIVVPFGILYAAVYGPEAALFCELFDAKVRYTGISFVYQFSGIFASGITPIIATALLKSGGGQPWQICA------------YVAFAGVVSALSVALI------GRGAG 426          
The following BLAST results are available for this feature:
BLAST of EWM26336.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585108343|gb|EWM26336.1|0.000e+0100.00shikimate transporter 3 [Nannochloropsis gaditana][more]
gi|1148582342|ref|WP_077328927.1|7.788e-5230.53MFS transporter [Virgibacillus siamensis][more]
gi|498217641|ref|WP_010531797.1|8.636e-5130.07MFS transporter [Lentibacillus jeotgali][more]
gi|737851315|ref|WP_035818555.1|6.586e-4130.89MFS transporter [Cupriavidus sp. SK-4] >gi|6014468... [more]
gi|499936772|ref|WP_011617506.1|7.275e-4130.67MFS transporter [Cupriavidus necator] >gi|11353028... [more]
gi|1108392537|emb|SCU73374.1|8.529e-4130.89Shikimate transporter [Cupriavidus necator][more]
gi|517120201|ref|WP_018309019.1|1.744e-4030.89MFS transporter [Cupriavidus sp. UYPR2.512][more]
gi|498509862|ref|WP_010810329.1|1.888e-4030.67MFS transporter [Ralstonia sp. GA3-3] >gi|49034037... [more]
gi|503719362|ref|WP_013953438.1|2.170e-4030.89MFS transporter [Cupriavidus necator] >gi|33816969... [more]
gi|1049681161|emb|SCB17641.1|9.911e-3930.67metabolite-proton symporter [Cupriavidus alkaliphi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4348rna4348Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications